org.apache.jena.query.QueryExecutionFactory Java Examples
The following examples show how to use
org.apache.jena.query.QueryExecutionFactory.
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Example #1
Source File: PubchemMeshSynonyms.java From act with GNU General Public License v3.0 | 7 votes |
public String fetchCIDFromInchi(String inchi) { // The clone method has its own implementation in the SelectBuilder. Thus safe to use! SelectBuilder sb = CID_QUERY_TMPL.clone(); // The inchi litteral needs to be create with a language tag, otherwise it will not match anything // See "Matching Litteral with Language Tags" (https://www.w3.org/TR/rdf-sparql-query/#matchLangTags) // for more information sb.setVar(Var.alloc("inchi_string"), NodeFactory.createLiteral(inchi, ENGLISH_LANG_TAG)); Query query = sb.build(); String result; LOGGER.debug("Executing SPARQL query: %s", query.toString()); try (QueryExecution qexec = QueryExecutionFactory.sparqlService(sparqlService, query)) { ResultSet results = qexec.execSelect(); // TODO: we assume here that there is at most one CID per InChI and return the first CID // Improve that behavior so we can stitch together many CID's synonyms. if (!results.hasNext()) { LOGGER.info("Could not find Pubchem Compound Id for input InChI %s", inchi); return null; } result = results.nextSolution().getResource("inchi_iri").getLocalName(); } String cid = extractCIDFromResourceName(result); LOGGER.info("Found Pubchem Compound Id %s for input InChI %s", cid, inchi); return cid; }
Example #2
Source File: ARQTest.java From tarql with BSD 2-Clause "Simplified" License | 6 votes |
@Test public void testQueryAddValuesInQueryPattern() { List<Var> header = vars("a", "b"); Binding b1 = binding(header, "1", "2"); Binding b2 = binding(header, "3", "4"); Query q = QueryFactory.create("SELECT * {}"); ElementGroup group = new ElementGroup(); ElementData table = new ElementData(); table.add(Var.alloc("a")); table.add(Var.alloc("b")); table.add(b1); table.add(b2); group.addElement(q.getQueryPattern()); group.addElement(table); q.setQueryPattern(group); ResultSet rs = QueryExecutionFactory.create(q, ModelFactory.createDefaultModel()).execSelect(); assertEquals(Arrays.asList(new String[]{"a","b"}), rs.getResultVars()); assertTrue(rs.hasNext()); assertEquals(b1, rs.nextBinding()); assertTrue(rs.hasNext()); assertEquals(b2, rs.nextBinding()); assertFalse(rs.hasNext()); }
Example #3
Source File: PubchemMeshSynonyms.java From act with GNU General Public License v3.0 | 6 votes |
public Map<MeshTermType, Set<String>> fetchMeshTermsFromCID(String cid) { // The clone method has its own implementation in the SelectBuilder. Thus safe to use! SelectBuilder sb = MESH_TERMS_QUERY_TMPL.clone(); sb.setVar(Var.alloc("compound"), String.format("compound:%s", cid)); Query query = sb.build(); LOGGER.debug("Executing SPARQL query: %s", query.toString()); Map<MeshTermType, Set<String>> map = new HashMap<>(); try (QueryExecution queryExecution = QueryExecutionFactory.sparqlService(sparqlService, query)) { ResultSet results = queryExecution.execSelect(); while(results.hasNext()) { QuerySolution solution = results.nextSolution(); String conceptLabel = solution.getLiteral("concept_label").getString(); String lexicalTag = solution.getLiteral("lexical_tag").getString(); LOGGER.debug("Found term %s with tag %s", conceptLabel, lexicalTag); MeshTermType meshTermsType = MeshTermType.getByLexicalTag(lexicalTag); Set synonyms = map.get(meshTermsType); if (synonyms == null) { synonyms = new HashSet<>(); map.put(meshTermsType, synonyms); } synonyms.add(conceptLabel); } } return map; }
Example #4
Source File: PubchemMeshSynonyms.java From act with GNU General Public License v3.0 | 6 votes |
public Map<PubchemSynonymType, Set<String>> fetchPubchemSynonymsFromCID(String cid) { // The clone method has its own implementation in the SelectBuilder. Thus safe to use! SelectBuilder sb = PUBCHEM_SYNO_QUERY_TMPL.clone(); sb.setVar(Var.alloc("compound"), String.format("compound:%s", cid)); Query query = sb.build(); LOGGER.debug("Executing SPARQL query: %s", query.toString()); Map<PubchemSynonymType, Set<String>> map = new HashMap<>(); try (QueryExecution queryExecution = QueryExecutionFactory.sparqlService(sparqlService, query)) { ResultSet results = queryExecution.execSelect(); while(results.hasNext()) { QuerySolution solution = results.nextSolution(); String cheminfId = solution.getResource("type").getLocalName(); String synonym = solution.getLiteral("value").getString(); LOGGER.debug("Found synonym %s with type %s", synonym, cheminfId); PubchemSynonymType synonymType = PubchemSynonymType.getByCheminfId(cheminfId); Set synonyms = map.get(synonymType); if (synonyms == null) { synonyms = new HashSet<>(); map.put(synonymType, synonyms); } synonyms.add(synonym); } } return map; }
Example #5
Source File: CustomQueryValidator.java From rdflint with MIT License | 6 votes |
@Override public void validateTripleSet(LintProblemSet problems, String file, List<Triple> tripeSet) { if (this.getParameters().getRules() == null) { return; } // execute sparql & custom validation Graph g = Factory.createGraphMem(); tripeSet.forEach(g::add); Model m = ModelFactory.createModelForGraph(g); this.getParameters().getRules().stream() .filter(r -> file.matches(r.getTarget())) .forEach(r -> { Query query = QueryFactory.create(r.getQuery()); QueryExecution qe = QueryExecutionFactory.create(query, m); Binding binding = new Binding(); binding.setVariable("rs", qe.execSelect()); binding.setVariable("log", new ProblemLogger(this, problems, file, r.getName())); GroovyShell shell = new GroovyShell(binding, new CompilerConfiguration()); shell.evaluate(r.getValid()); }); }
Example #6
Source File: LocationMapperAccept.java From sparql-generate with Apache License 2.0 | 6 votes |
public LocationMapperAccept(final Model configurationModel) { Query q = QueryFactory.create("PREFIX lm: <http://jena.hpl.hp.com/2004/08/location-mapping#>" + "SELECT * WHERE {" + "[] lm:mapping ?e ." + "?e lm:name ?name ; lm:altName ?alt ." + "OPTIONAL { ?e lm:media ?media . } " + "}"); try (QueryExecution exec = QueryExecutionFactory.create(q, configurationModel)) { exec.execSelect().forEachRemaining((result) -> { String name = null, altName = null, media = null; try { name = result.getLiteral("name").getString(); altName = result.getLiteral("alt").getString(); media = (result.getLiteral("media") == null ? null : result.getLiteral("media").getString()); altLocations.put(new LookUpRequest(name, media), new LookUpRequest(altName, media)); } catch (Exception ex) { log.debug("Error while reading mapping in configuration model for name " + name + ", alt " + altName + ", media " + media, ex); } }); } }
Example #7
Source File: Validator.java From Processor with Apache License 2.0 | 6 votes |
public OntModel fixOntModel(OntModel ontModel) { if (ontModel == null) throw new IllegalArgumentException("Model cannot be null"); OntModel fixedModel = ModelFactory.createOntologyModel(ontModel.getSpecification()); Query fix = QueryFactory.create("CONSTRUCT\n" + "{\n" + " ?s ?p ?o\n" + "}\n" + "WHERE\n" + "{\n" + " ?s ?p ?o\n" + " FILTER (!(?p = <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> && ?o = <https://www.w3.org/ns/ldt#Constraint>))\n" + "}"); try (QueryExecution qex = QueryExecutionFactory.create(fix, ontModel)) { fixedModel.add(qex.execConstruct()); } return fixedModel; }
Example #8
Source File: JenaQuery.java From trainbenchmark with Eclipse Public License 1.0 | 6 votes |
@SuppressWarnings("unchecked") @Override public Collection<TPatternMatch> evaluate() throws IOException { final List<TPatternMatch> matches = new ArrayList<>(); try (QueryExecution queryExecution = QueryExecutionFactory.create(jenaQuery, driver.getModel())) { final ResultSet resultSet = queryExecution.execSelect(); while (resultSet.hasNext()) { final QuerySolution qs = resultSet.next(); final JenaMatch match = JenaMatch.createMatch(query, qs); matches.add((TPatternMatch) match); } } return matches; }
Example #9
Source File: CombineManifest.java From incubator-taverna-language with Apache License 2.0 | 6 votes |
private static List<RDFNode> creatingAgentsFor(Resource r) { logger.fine("Finding creator of " + r); String queryStr = sparqlPrefixes + "SELECT ?agent WHERE { \n" + " { \n" + " ?r dct:creator [ \n" + " rdfs:member ?agent \n" + " ] \n" + " } UNION { \n" + " ?r dct:creator ?agent .\n " + " FILTER NOT EXISTS { ?agent rdfs:member ?member } \n" + " } \n" + "} \n"; logger.finer(QueryFactory.create(queryStr).toString()); QueryExecution qexec = QueryExecutionFactory.create(queryStr, r.getModel()); QuerySolutionMap binding = new QuerySolutionMap(); binding.add("r", r); qexec.setInitialBinding(binding); ResultSet select = qexec.execSelect(); List<RDFNode> agents = new ArrayList<>(); while (select.hasNext()) { RDFNode agent = select.next().get("agent"); logger.fine("Found: " + agent); agents.add(agent); } return agents; }
Example #10
Source File: CombineManifest.java From incubator-taverna-language with Apache License 2.0 | 6 votes |
private static Resource mboxForAgent(Resource agentResource) { logger.fine("Finding mbox of " + agentResource); String queryStr = sparqlPrefixes + "SELECT ?mbox WHERE { \n" + " { ?agent foaf:mbox ?mbox } \n" + " UNION \n" + " { ?agent vcard:hasEmail ?mbox } \n" + " UNION \n" + " { ?agent vcard:email ?email . \n" + " BIND(IRI(CONCAT(\"mbox:\", ?email)) AS ?mbox) \n" // legacy + " } \n" + "} \n"; logger.finer(QueryFactory.create(queryStr).toString()); QueryExecution qexec = QueryExecutionFactory.create(queryStr, agentResource.getModel()); QuerySolutionMap binding = new QuerySolutionMap(); binding.add("agent", agentResource); qexec.setInitialBinding(binding); ResultSet select = qexec.execSelect(); if (select.hasNext()) { Resource mbox = select.next().getResource("mbox"); logger.fine("Found mbox: " + mbox); return mbox; } logger.fine("mbox not found"); return null; }
Example #11
Source File: TestAnnotationTools.java From incubator-taverna-language with Apache License 2.0 | 6 votes |
@Test public void componentStuff() throws Exception { Dataset dataset = annotations.annotationDatasetFor(component.getMainWorkflow()); String query = "PREFIX comp: <http://purl.org/DP/components#> " + "SELECT ?fits ?from ?to WHERE { " + " GRAPH ?any { " + "?w comp:fits ?fits ; " + " comp:migrates ?path . " + "?path comp:fromMimetype ?from ; " + " comp:toMimetype ?to . " + " }" + "}"; ResultSet select = QueryExecutionFactory.create(query, dataset).execSelect(); assertTrue(select.hasNext()); QuerySolution solution = select.next(); assertEquals("image/tiff", solution.getLiteral("from").toString()); assertEquals("image/tiff", solution.getLiteral("to").toString()); assertEquals("MigrationAction", solution.getResource("fits").getLocalName()); }
Example #12
Source File: DBPediaService.java From baleen with Apache License 2.0 | 6 votes |
/** * Search DBPedia for candidates with a language restriction on certain variables * * @param selectVars The placeholders for variables to find eg ?x ?y * @param whereClauses An array of StringTriple in Subject, Predicate, Object form * @param filterClause Clause String to filter results * @param limit The maximum number of Candidates to return * @param idField A uniquely identifying field contained in the returned Candidates * @param nameField The name field used to find the Candidates * @param languageSpecificVars Variables to restrict to the specified language * @return a Set of DBPediaCandidates * @throws ParseException Exception thrown if the SPARQL query fails to parse */ public Set<DefaultCandidate> searchForCandidates( String[] selectVars, StringTriple[] whereClauses, String filterClause, int limit, String idField, String nameField, String[] languageSpecificVars) throws ParseException { Query query = buildQuery(selectVars, whereClauses, filterClause, limit, languageSpecificVars); QueryExecution qe = QueryExecutionFactory.sparqlService(DBPEDIA_SPARQL_ENDPOINT, query); ResultSet rs = qe.execSelect(); if (LOGGER.isDebugEnabled()) { ResultSet rsToPrint = qe.execSelect(); LOGGER.debug(ResultSetFormatter.asText(rsToPrint)); } return getCandidates(rs, idField, nameField); }
Example #13
Source File: ExTDB5.java From xcurator with Apache License 2.0 | 6 votes |
public static void main(String... argv) { // Direct way: Make a TDB-back Jena model in the named directory. String directory = "MyDatabases/DB1" ; Dataset dataset = TDBFactory.createDataset(directory) ; // Potentially expensive query. String sparqlQueryString = "SELECT (count(*) AS ?count) { ?s ?p ?o }" ; // See http://incubator.apache.org/jena/documentation/query/app_api.html Query query = QueryFactory.create(sparqlQueryString) ; QueryExecution qexec = QueryExecutionFactory.create(query, dataset) ; try { ResultSet results = qexec.execSelect() ; for ( ; results.hasNext() ; ) { QuerySolution soln = results.nextSolution() ; int count = soln.getLiteral("count").getInt() ; System.out.println("count = "+count) ; } } finally { qexec.close() ; } // Close the dataset. dataset.close(); }
Example #14
Source File: ExTDB4.java From xcurator with Apache License 2.0 | 6 votes |
public static void main(String... argv) { // Direct way: Make a TDB-back Jena model in the named directory. String directory = "MyDatabases/DB1" ; Dataset dataset = TDBFactory.createDataset(directory) ; // Potentially expensive query. String sparqlQueryString = "SELECT (count(*) AS ?count) { ?s ?p ?o }" ; // See http://incubator.apache.org/jena/documentation/query/app_api.html Query query = QueryFactory.create(sparqlQueryString) ; QueryExecution qexec = QueryExecutionFactory.create(query, dataset) ; ResultSet results = qexec.execSelect() ; ResultSetFormatter.out(results) ; qexec.close() ; dataset.close(); }
Example #15
Source File: TripleIndexCreatorContext.java From AGDISTIS with GNU Affero General Public License v3.0 | 6 votes |
public String sparql(String subject) { // First query takes the most specific class from a given resource. String ontology_service = endpoint; String endpointsSparql = "select ?label where {<" + subject + "> <http://www.w3.org/2000/01/rdf-schema#label> ?label FILTER (lang(?label) = 'en')} LIMIT 100"; Query sparqlQuery = QueryFactory.create(endpointsSparql, Syntax.syntaxARQ); QueryEngineHTTP qexec = (QueryEngineHTTP) QueryExecutionFactory.sparqlService(ontology_service, sparqlQuery); qexec.setModelContentType(WebContent.contentTypeRDFXML); ResultSet results = qexec.execSelect(); String property = null; while (results.hasNext()) { QuerySolution qs = results.next(); property = qs.getLiteral("?label").getLexicalForm(); } return property; }
Example #16
Source File: DBpediaMappingValidator.java From RDFUnit with Apache License 2.0 | 6 votes |
public List<MappingDomainError> getErrorListFromModel(Model model) { List<MappingDomainError> mappingDomainErrors = new ArrayList<>(); try ( QueryExecution qe = QueryExecutionFactory.create(SPARQL_QUERY, model)) { qe.execSelect().forEachRemaining( qs -> { String mapping = qs.get("mapping").toString(); String error = qs.get("error").toString(); String missing = qs.get("missing").toString(); String predicate = qs.get("predicate").toString(); mappingDomainErrors.add(new MappingDomainError(mapping, predicate, error, missing)); } ); } return mappingDomainErrors; }
Example #17
Source File: ARQTest.java From tarql with BSD 2-Clause "Simplified" License | 6 votes |
@Test public void testQuerySetValuesDataBlock() { List<Var> header = vars("a", "b"); Binding b1 = binding(header, "1", "2"); Binding b2 = binding(header, "3", "4"); Query q = QueryFactory.create("SELECT * {}"); q.setValuesDataBlock(header, bindings(b1, b2)); ResultSet rs = QueryExecutionFactory.create(q, ModelFactory.createDefaultModel()).execSelect(); assertEquals(Arrays.asList(new String[]{"a","b"}), rs.getResultVars()); assertTrue(rs.hasNext()); assertEquals(b1, rs.nextBinding()); assertTrue(rs.hasNext()); assertEquals(b2, rs.nextBinding()); assertFalse(rs.hasNext()); }
Example #18
Source File: Test.java From SDA with BSD 2-Clause "Simplified" License | 5 votes |
public void updateTest() { // Add a new book to the collection // String service = "http://219.248.137.7:13030/icbms/update"; // UpdateRequest ur = UpdateFactory // .create("" // + "delete { <http://www.pineone.com/campus/TemperatureObservationValue_LB0001> <http://data.nasa.gov/qudt/owl/qudt#hasNumericValue> ?value . } " // + "insert { <http://www.pineone.com/campus/TemperatureObservationValue_LB0001> <http://data.nasa.gov/qudt/owl/qudt#hasNumericValue> \"19\" . } " //<-- 19대신 여기 온도를 넣어주세 // + "WHERE { <http://www.pineone.com/campus/TemperatureObservationValue_LB0001> <http://data.nasa.gov/qudt/owl/qudt#hasNumericValue> ?value . }"); // UpdateProcessor up = UpdateExecutionFactory.createRemote(ur, service); // up.execute(); // Query the collection, dump output // String service1 = "http://219.248.137.7:13030/icbms/"; // QueryExecution qe = QueryExecutionFactory.sparqlService(service1, // "SELECT * WHERE {<http://www.pineone.com/campus/Student_S00001> ?r ?y} limit 20 "); // // ResultSet results = qe.execSelect(); // ResultSetFormatter.out(System.out, results); // qe.close(); Model model = ModelFactory.createDefaultModel(); Statement s = model.createStatement(model.createResource("ex:e1"),model.createProperty("ex:p1"), ResourceFactory.createTypedLiteral(new String("0.6"))); model.add(s); String query = "select * {?s ?p ?o }"; QueryExecution qe = QueryExecutionFactory.create(query, model); ResultSet results = qe.execSelect(); ResultSetFormatter.out(System.out, results); qe.close(); }
Example #19
Source File: ERDDataset2.java From gerbil with GNU Affero General Public License v3.0 | 5 votes |
private List<Marking> findMarkings(String[] text, File annFile) throws GerbilException { List<Marking> markings = new ArrayList<Marking>(); try (BufferedReader breader = new BufferedReader(new InputStreamReader( new FileInputStream(annFile), Charset.forName("UTF-8")))) { String line; while ((line = breader.readLine()) != null) { if(line.isEmpty()){ continue; } String[] annotation = line.split("\t"); int searchID = getTrecID(text[0]); int annoID = getTrecID(annotation[0]); if(searchID == annoID){ int start = text[1].indexOf(annotation[3]); int length = annotation[3].length(); //FIXME time consuming! String freebaseID = annotation[2].substring(1, annotation[2].length()).replace("/","."); Query query = QueryFactory.create(queryTemp.replace("%%v%%", freebaseID)); QueryExecution qexec = QueryExecutionFactory.createServiceRequest(DBPEDIA_SERVICE, query); String uri = qexec.execSelect().next().getResource("s").getURI(); markings.add(new NamedEntity(start, length, uri)); } else if(annoID > searchID){ //There is no annotation for the given text break; } } } catch (IOException e) { throw new GerbilException("Exception while reading dataset.", e, ErrorTypes.DATASET_LOADING_ERROR); } return markings; }
Example #20
Source File: JenaDriver.java From trainbenchmark with Eclipse Public License 1.0 | 5 votes |
public Collection<QuerySolution> runQuery(final RailwayQuery query, final String queryDefinition) throws IOException { final Collection<QuerySolution> results = new ArrayList<>(); try (QueryExecution queryExecution = QueryExecutionFactory.create(queryDefinition, model)) { final ResultSet resultSet = queryExecution.execSelect(); while (resultSet.hasNext()) { final QuerySolution qs = resultSet.next(); results.add(qs); } } return results; }
Example #21
Source File: DBpediaToWikiId.java From gerbil with GNU Affero General Public License v3.0 | 5 votes |
/** * The Wikipedia Id or -1 if the Id couldn't be retrieved. * * FIXME The method throws an exception for "http://DBpedia.org/resource/Origin_of_the_name_"Empire_State"". this * might be happen because of the quotes inside the URI. * * @param dbpediaUri * @return */ @Deprecated public static int getIdFromDBpedia(String dbpediaUri) { int id = -1; ParameterizedSparqlString query = new ParameterizedSparqlString( "SELECT ?id WHERE { ?dbpedia dbo:wikiPageID ?id .}", prefixes); query.setIri("dbpedia", dbpediaUri); QueryExecution qexec = null; try { qexec = QueryExecutionFactory.create(query.asQuery(), model); } catch (QueryParseException e) { LOGGER.error("Got a bad dbpediaUri \"" + dbpediaUri + "\" which couldn't be parse inside of a SPARQL query. Returning -1.", e); return id; } ResultSet result = qexec.execSelect(); if (result.hasNext()) { id = result.next().get("id").asLiteral().getInt(); return id; } qexec = QueryExecutionFactory.sparqlService( "http://dbpedia.org/sparql", query.asQuery()); result = qexec.execSelect(); if (result.hasNext()) { id = result.next().get("id").asLiteral().getInt(); model.add(new StatementImpl(model.createResource(dbpediaUri), model .createProperty("http://dbpedia.org/ontology/wikiPageID"), model.createTypedLiteral(id))); return id; } model.add(new StatementImpl(model.createResource(dbpediaUri), model .createProperty("http://dbpedia.org/ontology/wikiPageID"), model.createTypedLiteral(id))); return id; }
Example #22
Source File: Utils.java From SDA with BSD 2-Clause "Simplified" License | 5 votes |
public static final void getTripleCount() throws Exception { String serviceURI = Utils.getSdaProperty("com.pineone.icbms.sda.knowledgebase.sparql.endpoint"); String queryString = "select (count(?s) as ?count) where {?s ?p ?o }"; QueryExecution queryExec = QueryExecutionFactory.sparqlService(serviceURI, queryString); ResultSet rs = queryExec.execSelect(); // 값을 console에 출력함 ResultSetFormatter.out(rs); }
Example #23
Source File: SPARQLDataProxy.java From Knowage-Server with GNU Affero General Public License v3.0 | 5 votes |
@Override public IDataStore load(IDataReader dataReader) { logger.debug("IN"); IDataStore dataStore = null; try (QueryExecution queryExecution = QueryExecutionFactory.sparqlService(sparqlEndpoint, sparqlQuery, defaultGraphIRI)) { ResultSet resultSet = executeSPARQLQuery(queryExecution); dataStore = readResultSet(dataReader, dataStore, resultSet); } catch (Exception e) { throw new SpagoBIRuntimeException("An error occurred while executing SPARQL query", e); } logger.debug("OUT"); return dataStore; }
Example #24
Source File: RdfDataManager.java From rdf2neo with GNU Lesser General Public License v3.0 | 5 votes |
/** * Take an existing {@link CypherEntity} and adds the properties that can be mapped from the underlining TDB by means * of a property query, like {@link CyNodeLoadingHandler#getNodePropsSparql()}, or * {@link CyRelationLoadingHandler#getRelationPropsSparql()}. * * It doesn't do anything if the query is null. * */ protected void addCypherProps ( CypherEntity cyEnt, String propsSparql ) { ensureOpen (); Dataset dataSet = this.getDataSet (); QuerySolutionMap params = new QuerySolutionMap (); params.add ( "iri", dataSet.getUnionModel().getResource ( cyEnt.getIri () ) ); // It may be omitted, if you don't have any property except the IRI. if ( propsSparql == null ) return; Query qry = SparqlUtils.getCachedQuery ( propsSparql ); Function<String, String> propIdConverter = this.getCyPropertyIdConverter (); boolean wasInTnx = dataSet.isInTransaction (); if ( !wasInTnx ) dataSet.begin ( ReadWrite.READ ); try { QueryExecution qx = QueryExecutionFactory.create ( qry, dataSet, params ); qx.execSelect ().forEachRemaining ( row -> { String propName = this.getCypherId ( row.get ( "name" ), propIdConverter ); if ( propName == null ) throw new IllegalArgumentException ( "Null property name for " + cyEnt.getIri () ); String propValue = JENAUTILS.literal2Value ( row.getLiteral ( "value" ) ).get (); cyEnt.addPropValue ( propName, propValue ); }); } finally { if ( !wasInTnx && dataSet.isInTransaction () ) dataSet.end (); } }
Example #25
Source File: ExTDB_Txn1.java From xcurator with Apache License 2.0 | 5 votes |
public static void execQuery(String sparqlQueryString, Dataset dataset) { Query query = QueryFactory.create(sparqlQueryString) ; QueryExecution qexec = QueryExecutionFactory.create(query, dataset) ; try { ResultSet results = qexec.execSelect() ; for ( ; results.hasNext() ; ) { QuerySolution soln = results.nextSolution() ; int count = soln.getLiteral("count").getInt() ; System.out.println("count = "+count) ; } } finally { qexec.close() ; } }
Example #26
Source File: RdfDataManager.java From rdf2neo with GNU Lesser General Public License v3.0 | 5 votes |
/** * Uses the underlining TDB and mapping queries to create a new {@link CyNode} instance. * * @param nodeRes the RDF/Jena resource correspnding to the Cypher node. This provides the ?iri paramter in the queries below. * @param labelsSparql the node labels query, which is usually taken from {@link CyNodeLoadingHandler#getLabelsSparql()}. * @param propsSparql the node properties query, which is usually taken from {@link CyNodeLoadingHandler#getNodePropsSparql()}. */ public CyNode getCyNode ( Resource nodeRes, String labelsSparql, String propsSparql ) { ensureOpen (); QuerySolutionMap params = new QuerySolutionMap (); params.add ( "iri", nodeRes ); CyNode cyNode = new CyNode ( nodeRes.getURI () ); // The node's labels if ( labelsSparql != null ) { // If it's omitted, it will get the default label. Query qry = SparqlUtils.getCachedQuery ( labelsSparql ); Function<String, String> labelIdConverter = this.getCyNodeLabelIdConverter (); boolean wasInTnx = dataSet.isInTransaction (); if ( !wasInTnx ) dataSet.begin ( ReadWrite.READ ); try { QueryExecution qx = QueryExecutionFactory.create ( qry, this.getDataSet(), params ); qx.execSelect ().forEachRemaining ( row -> cyNode.addLabel ( this.getCypherId ( row.get ( "label" ), labelIdConverter ) ) ); } finally { if ( !wasInTnx && dataSet.isInTransaction () ) dataSet.end (); } } // and the properties this.addCypherProps ( cyNode, propsSparql ); return cyNode; }
Example #27
Source File: TarqlQueryExecution.java From tarql with BSD 2-Clause "Simplified" License | 5 votes |
private QueryExecution createQueryExecution(Query query, Model model) { QueryExecution result = QueryExecutionFactory.create(query, model); PrefixMappingImpl prefixes = new PrefixMappingImpl(); prefixes.setNsPrefixes(tq.getPrologue().getPrefixMapping()); prefixes.setNsPrefix("tarql", tarql.NS); result.getContext().set(ExpandPrefixFunction.PREFIX_MAPPING, prefixes); return result; }
Example #28
Source File: OneM2MSubscribeUriMapper.java From SDA with BSD 2-Clause "Simplified" License | 5 votes |
/** * subscribe uri 가져오기 * @return List<String> */ public List<String> getSubscribeUri() { List<String> result = new ArrayList<String>(); String query = this.makeQueryString(); String serviceURI = Utils.getSdaProperty("com.pineone.icbms.sda.knowledgebase.dw.sparql.endpoint"); String baseuri = Utils.getSdaProperty("com.pineone.icbms.sda.knowledgebase.uri"); QueryExecution queryExec = QueryExecutionFactory.sparqlService(serviceURI, query); ResultSet rs = queryExec.execSelect(); for (; rs.hasNext();) { QuerySolution qs = rs.nextSolution(); result.add(getProperContainerType( new String(qs.get("res").toString().replaceAll(baseuri, "")))); } return result; }
Example #29
Source File: Utils.java From SDA with BSD 2-Clause "Simplified" License | 5 votes |
/** * Device정보 리턴 * @param deviceUri * @return String * @throws Exception */ public static String getDeviceInfo(String deviceUri) throws Exception { String serviceURI = Utils.getSdaProperty("com.pineone.icbms.sda.knowledgebase.dw.sparql.endpoint")+"/sparql"; StringWriter out = new StringWriter(); String query = getSparQlHeader() + "\n"+ "describe "+ deviceUri; QueryExecution qe = QueryExecutionFactory.sparqlService(serviceURI, query); Model model = qe.execDescribe(); qe.close(); model.write(out,"RDF/XML"); return out.toString(); }
Example #30
Source File: Utils.java From SDA with BSD 2-Clause "Simplified" License | 5 votes |
public static final void getTripleAll() throws Exception { String serviceURI = Utils.getSdaProperty("com.pineone.icbms.sda.knowledgebase.sparql.endpoint"); String queryString = "select ?s ?p ?o {?s ?p ?o}"; QueryExecution queryExec = QueryExecutionFactory.sparqlService(serviceURI, queryString); ResultSet rs = queryExec.execSelect(); ResultSetFormatter.out(rs); }