net.imglib2.outofbounds.OutOfBoundsFactory Java Examples

@OpMethod(op = net.imagej.ops.deconvolve.PadAndRichardsonLucy.class)
public <I extends RealType<I>, O extends RealType<O>, K extends RealType<K>>
	RandomAccessibleInterval<O> richardsonLucy(
		final RandomAccessibleInterval<O> out,
		final RandomAccessibleInterval<I> in,
		final RandomAccessibleInterval<K> kernel, final long[] borderSize,
		final OutOfBoundsFactory<I, RandomAccessibleInterval<I>> obfInput,
		final OutOfBoundsFactory<K, RandomAccessibleInterval<K>> obfKernel,
		final int maxIterations)
{
	@SuppressWarnings("unchecked")
	final RandomAccessibleInterval<O> result =
		(RandomAccessibleInterval<O>) ops().run(
			net.imagej.ops.deconvolve.PadAndRichardsonLucy.class, out, in, kernel,
			borderSize, obfInput, obfKernel, maxIterations);
	return result;
}
 

@OpMethod(op = net.imagej.ops.deconvolve.PadAndRichardsonLucy.class)
public <I extends RealType<I>, O extends RealType<O>, K extends RealType<K>>
	RandomAccessibleInterval<O> richardsonLucy(
		final RandomAccessibleInterval<O> out,
		final RandomAccessibleInterval<I> in,
		final RandomAccessibleInterval<K> kernel, final long[] borderSize,
		final OutOfBoundsFactory<I, RandomAccessibleInterval<I>> obfInput,
		final OutOfBoundsFactory<K, RandomAccessibleInterval<K>> obfKernel,
		final O outType, final int maxIterations)
{
	@SuppressWarnings("unchecked")
	final RandomAccessibleInterval<O> result =
		(RandomAccessibleInterval<O>) ops().run(
			net.imagej.ops.deconvolve.PadAndRichardsonLucy.class, out, in, kernel,
			borderSize, obfInput, obfKernel, outType, maxIterations);
	return result;
}
 

@OpMethod(op = net.imagej.ops.deconvolve.PadAndRichardsonLucy.class)
public <I extends RealType<I>, O extends RealType<O> & NativeType<O>, K extends RealType<K>, C extends ComplexType<C>>
	RandomAccessibleInterval<O> richardsonLucy(
		final RandomAccessibleInterval<O> out,
		final RandomAccessibleInterval<I> in,
		final RandomAccessibleInterval<K> kernel, final long[] borderSize,
		final OutOfBoundsFactory<I, RandomAccessibleInterval<I>> obfInput,
		final OutOfBoundsFactory<K, RandomAccessibleInterval<K>> obfKernel,
		final O outType, final C fftType, final int maxIterations)
{
	@SuppressWarnings("unchecked")
	final RandomAccessibleInterval<O> result =
		(RandomAccessibleInterval<O>) ops().run(
			net.imagej.ops.deconvolve.PadAndRichardsonLucy.class, out, in, kernel,
			borderSize, obfInput, obfKernel, outType, fftType, maxIterations);
	return result;
}
 

@OpMethod(op = net.imagej.ops.deconvolve.PadAndRichardsonLucy.class)
public <I extends RealType<I>, O extends RealType<O>, K extends RealType<K>, C extends ComplexType<C>>
	RandomAccessibleInterval<O> richardsonLucy(
		final RandomAccessibleInterval<O> out,
		final RandomAccessibleInterval<I> in,
		final RandomAccessibleInterval<K> kernel, final long[] borderSize,
		final OutOfBoundsFactory<I, RandomAccessibleInterval<I>> obfInput,
		final OutOfBoundsFactory<K, RandomAccessibleInterval<K>> obfKernel,
		final O outType, final C fftType, final int maxIterations,
		final boolean nonCirculant)
{
	@SuppressWarnings("unchecked")
	final RandomAccessibleInterval<O> result =
		(RandomAccessibleInterval<O>) ops().run(
			net.imagej.ops.deconvolve.PadAndRichardsonLucy.class, out, in, kernel,
			borderSize, obfInput, obfKernel, outType, fftType, maxIterations,
			nonCirculant);
	return result;
}
 

@OpMethod(op = net.imagej.ops.deconvolve.PadAndRichardsonLucyTV.class)
public <I extends RealType<I>, O extends RealType<O>, K extends RealType<K>>
	RandomAccessibleInterval<O> richardsonLucyTV(
		final RandomAccessibleInterval<O> out,
		final RandomAccessibleInterval<I> in,
		final RandomAccessibleInterval<K> kernel, final long[] borderSize,
		final OutOfBoundsFactory<I, RandomAccessibleInterval<I>> obfInput,
		final int maxIterations, final float regularizationFactor)
{
	@SuppressWarnings("unchecked")
	final RandomAccessibleInterval<O> result =
		(RandomAccessibleInterval<O>) ops().run(
			net.imagej.ops.deconvolve.PadAndRichardsonLucyTV.class, out, in, kernel,
			borderSize, obfInput, maxIterations, regularizationFactor);
	return result;
}
 

@OpMethod(op = net.imagej.ops.deconvolve.PadAndRichardsonLucyTV.class)
public <I extends RealType<I>, O extends RealType<O>, K extends RealType<K>>
	RandomAccessibleInterval<O> richardsonLucyTV(
		final RandomAccessibleInterval<O> out,
		final RandomAccessibleInterval<I> in,
		final RandomAccessibleInterval<K> kernel, final long[] borderSize,
		final OutOfBoundsFactory<I, RandomAccessibleInterval<I>> obfInput,
		final OutOfBoundsFactory<K, RandomAccessibleInterval<K>> obfKernel,
		final int maxIterations, final float regularizationFactor)
{
	@SuppressWarnings("unchecked")
	final RandomAccessibleInterval<O> result =
		(RandomAccessibleInterval<O>) ops().run(
			net.imagej.ops.deconvolve.PadAndRichardsonLucyTV.class, out, in, kernel,
			borderSize, obfInput, obfKernel, maxIterations, regularizationFactor);
	return result;
}
 

@OpMethod(op = net.imagej.ops.deconvolve.PadAndRichardsonLucyTV.class)
public <I extends RealType<I>, O extends RealType<O>, K extends RealType<K>>
	RandomAccessibleInterval<O> richardsonLucyTV(
		final RandomAccessibleInterval<O> out,
		final RandomAccessibleInterval<I> in,
		final RandomAccessibleInterval<K> kernel, final long[] borderSize,
		final OutOfBoundsFactory<I, RandomAccessibleInterval<I>> obfInput,
		final OutOfBoundsFactory<K, RandomAccessibleInterval<K>> obfKernel,
		final O outType, final int maxIterations,
		final float regularizationFactor)
{
	@SuppressWarnings("unchecked")
	final RandomAccessibleInterval<O> result =
		(RandomAccessibleInterval<O>) ops().run(
			net.imagej.ops.deconvolve.PadAndRichardsonLucyTV.class, out, in, kernel,
			borderSize, obfInput, obfKernel, outType, maxIterations,
			regularizationFactor);
	return result;
}
 

@OpMethod(op = net.imagej.ops.deconvolve.PadAndRichardsonLucyTV.class)
public <I extends RealType<I>, O extends RealType<O> & NativeType<O>, K extends RealType<K>, C extends ComplexType<C>>
	RandomAccessibleInterval<O> richardsonLucyTV(
		final RandomAccessibleInterval<O> out,
		final RandomAccessibleInterval<I> in,
		final RandomAccessibleInterval<K> kernel, final long[] borderSize,
		final OutOfBoundsFactory<I, RandomAccessibleInterval<I>> obfInput,
		final OutOfBoundsFactory<K, RandomAccessibleInterval<K>> obfKernel,
		final O outType, final C fftType, final int maxIterations,
		final float regularizationFactor)
{
	@SuppressWarnings("unchecked")
	final RandomAccessibleInterval<O> result =
		(RandomAccessibleInterval<O>) ops().run(
			net.imagej.ops.deconvolve.PadAndRichardsonLucyTV.class, out, in, kernel,
			borderSize, obfInput, obfKernel, outType, fftType, maxIterations,
			regularizationFactor);
	return result;
}
 

@OpMethod(op = net.imagej.ops.deconvolve.PadAndRichardsonLucyTV.class)
public <I extends RealType<I>, O extends RealType<O>, K extends RealType<K>, C extends ComplexType<C>>
	RandomAccessibleInterval<O> richardsonLucyTV(
		final RandomAccessibleInterval<O> out,
		final RandomAccessibleInterval<I> in,
		final RandomAccessibleInterval<K> kernel, final long[] borderSize,
		final OutOfBoundsFactory<I, RandomAccessibleInterval<I>> obfInput,
		final OutOfBoundsFactory<K, RandomAccessibleInterval<K>> obfKernel,
		final O outType, final C fftType, final int maxIterations,
		final boolean nonCirculant, final float regularizationFactor)
{
	@SuppressWarnings("unchecked")
	final RandomAccessibleInterval<O> result =
		(RandomAccessibleInterval<O>) ops().run(
			net.imagej.ops.deconvolve.PadAndRichardsonLucyTV.class, out, in, kernel,
			borderSize, obfInput, obfKernel, outType, fftType, maxIterations,
			nonCirculant, regularizationFactor);
	return result;
}
 

@OpMethod(op = net.imagej.ops.deconvolve.PadAndRichardsonLucyTV.class)
public <I extends RealType<I>, O extends RealType<O>, K extends RealType<K>, C extends ComplexType<C>>
	RandomAccessibleInterval<O> richardsonLucyTV(
		final RandomAccessibleInterval<O> out,
		final RandomAccessibleInterval<I> in,
		final RandomAccessibleInterval<K> kernel, final long[] borderSize,
		final OutOfBoundsFactory<I, RandomAccessibleInterval<I>> obfInput,
		final OutOfBoundsFactory<K, RandomAccessibleInterval<K>> obfKernel,
		final O outType, final C fftType, final int maxIterations,
		final boolean nonCirculant, final boolean accelerate,
		final float regularizationFactor)
{
	@SuppressWarnings("unchecked")
	final RandomAccessibleInterval<O> result =
		(RandomAccessibleInterval<O>) ops().run(
			net.imagej.ops.deconvolve.PadAndRichardsonLucyTV.class, out, in, kernel,
			borderSize, obfInput, obfKernel, outType, fftType, maxIterations,
			nonCirculant, accelerate, regularizationFactor);
	return result;
}
 

@OpMethod(
	op = net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMinimumThreshold.class)
public <T extends RealType<T>, B extends BooleanType<B>> IterableInterval<B>
	minimum(final IterableInterval<B> out, final RandomAccessibleInterval<T> in,
		final Shape shape,
		final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBoundsFactory)
{
	@SuppressWarnings("unchecked")
	final IterableInterval<B> result = (IterableInterval<B>) ops().run(
		net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMinimumThreshold.class,
		out, in, shape, outOfBoundsFactory);
	return result;
}
 

/** Executes the "padInput" filter operation on the given arguments. */
@OpMethod(op = net.imagej.ops.filter.pad.PadInput.class)
public <T extends ComplexType<T>> RandomAccessibleInterval<T> padInput(
	final RandomAccessibleInterval<T> in, final Dimensions paddedDimensions,
	final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> obf)
{
	@SuppressWarnings("unchecked")
	final RandomAccessibleInterval<T> result =
		(RandomAccessibleInterval<T>) ops().run(Ops.Filter.PadInput.class, in,
			paddedDimensions, obf);
	return result;
}
 

@OpMethod(
	op = net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMomentsThreshold.class)
public <T extends RealType<T>, B extends BooleanType<B>> IterableInterval<B>
	moments(final IterableInterval<B> out, final RandomAccessibleInterval<T> in,
		final Shape shape,
		final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBoundsFactory)
{
	@SuppressWarnings("unchecked")
	final IterableInterval<B> result = (IterableInterval<B>) ops().run(
		net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMomentsThreshold.class,
		out, in, shape, outOfBoundsFactory);
	return result;
}
 

@OpMethod(
	op = net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalOtsuThreshold.class)
public <T extends RealType<T>, B extends BooleanType<B>> IterableInterval<B>
	otsu(final IterableInterval<B> out, final RandomAccessibleInterval<T> in,
		final Shape shape,
		final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBoundsFactory)
{
	@SuppressWarnings("unchecked")
	final IterableInterval<B> result = (IterableInterval<B>) ops().run(
		net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalOtsuThreshold.class,
		out, in, shape, outOfBoundsFactory);
	return result;
}
 

@OpMethod(
	op = net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalPercentileThreshold.class)
public <T extends RealType<T>, B extends BooleanType<B>> IterableInterval<B>
	percentile(final IterableInterval<B> out,
		final RandomAccessibleInterval<T> in, final Shape shape,
		final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBoundsFactory)
{
	@SuppressWarnings("unchecked")
	final IterableInterval<B> result = (IterableInterval<B>) ops().run(
		net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalPercentileThreshold.class,
		out, in, shape, outOfBoundsFactory);
	return result;
}
 

@OpMethod(
	op = net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalRenyiEntropyThreshold.class)
public <T extends RealType<T>, B extends BooleanType<B>> IterableInterval<B>
	renyiEntropy(final IterableInterval<B> out,
		final RandomAccessibleInterval<T> in, final Shape shape,
		final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBoundsFactory)
{
	@SuppressWarnings("unchecked")
	final IterableInterval<B> result = (IterableInterval<B>) ops().run(
		net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalRenyiEntropyThreshold.class,
		out, in, shape, outOfBoundsFactory);
	return result;
}
 

@OpMethod(
	op = net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalShanbhagThreshold.class)
public <T extends RealType<T>, B extends BooleanType<B>> IterableInterval<B>
	shanbhag(final IterableInterval<B> out,
		final RandomAccessibleInterval<T> in, final Shape shape,
		final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBoundsFactory)
{
	@SuppressWarnings("unchecked")
	final IterableInterval<B> result = (IterableInterval<B>) ops().run(
		net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalShanbhagThreshold.class,
		out, in, shape, outOfBoundsFactory);
	return result;
}
 

/** Executes the "convolve" operation on the given arguments. */
@OpMethod(op = net.imagej.ops.filter.convolve.PadAndConvolveFFT.class)
public <I extends RealType<I>, O extends RealType<O>, K extends RealType<K>>
	RandomAccessibleInterval<O> convolve(final RandomAccessibleInterval<O> out,final RandomAccessibleInterval<I> in,
		final RandomAccessibleInterval<K> kernel, final long[] borderSize,
		final OutOfBoundsFactory<I, RandomAccessibleInterval<I>> obfInput)
{
	@SuppressWarnings("unchecked")
	final RandomAccessibleInterval<O> result =
		(RandomAccessibleInterval<O>) ops().run(Ops.Filter.Convolve.class, out, in,
			kernel, borderSize, obfInput);
	return result;
}
 

/** Executes the "convolve" operation on the given arguments. */
@OpMethod(op = net.imagej.ops.filter.convolve.PadAndConvolveFFT.class)
public <I extends RealType<I>, O extends RealType<O>, K extends RealType<K>, C extends ComplexType<C>>
	RandomAccessibleInterval<O> convolve(final RandomAccessibleInterval<O> out,final RandomAccessibleInterval<I> in,
		final RandomAccessibleInterval<K> kernel, final long[] borderSize,
		final OutOfBoundsFactory<I, RandomAccessibleInterval<I>> obfInput,
		final OutOfBoundsFactory<K, RandomAccessibleInterval<K>> obfKernel,
		final O outType, final C fftType)
{
	@SuppressWarnings("unchecked")
	final RandomAccessibleInterval<O> result =
		(RandomAccessibleInterval<O>) ops().run(Ops.Filter.Convolve.class, out, in,
			kernel, borderSize, obfInput, obfKernel, outType, fftType);
	return result;
}
 

/** Executes the "convolve" operation on the given arguments. */
@OpMethod(op = net.imagej.ops.filter.convolve.PadAndConvolveFFT.class)
public <I extends RealType<I>, O extends RealType<O>, K extends RealType<K>>
	RandomAccessibleInterval<O> convolve(final RandomAccessibleInterval<O> out,final RandomAccessibleInterval<I> in,
		final RandomAccessibleInterval<K> kernel, final long[] borderSize,
		final OutOfBoundsFactory<I, RandomAccessibleInterval<I>> obfInput,
		final OutOfBoundsFactory<K, RandomAccessibleInterval<K>> obfKernel,
		final O outType)
{
	@SuppressWarnings("unchecked")
	final RandomAccessibleInterval<O> result =
		(RandomAccessibleInterval<O>) ops().run(Ops.Filter.Convolve.class, out, in,
			kernel, borderSize, obfInput, obfKernel, outType);
	return result;
}
 

@OpMethod(
	op = net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMinErrorThreshold.class)
public <T extends RealType<T>, B extends BooleanType<B>> IterableInterval<B>
	minError(final IterableInterval<B> out,
		final RandomAccessibleInterval<T> in, final Shape shape,
		final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBoundsFactory)
{
	@SuppressWarnings("unchecked")
	final IterableInterval<B> result = (IterableInterval<B>) ops().run(
		net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMinErrorThreshold.class,
		out, in, shape, outOfBoundsFactory);
	return result;
}
 

@OpMethod(
	op = net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMaxLikelihoodThreshold.class)
public <T extends RealType<T>, B extends BooleanType<B>> IterableInterval<B>
	maxLikelihood(final IterableInterval<B> out,
		final RandomAccessibleInterval<T> in, final Shape shape,
		final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBoundsFactory)
{
	@SuppressWarnings("unchecked")
	final IterableInterval<B> result = (IterableInterval<B>) ops().run(
		net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMaxLikelihoodThreshold.class,
		out, in, shape, outOfBoundsFactory);
	return result;
}
 

@OpMethod(
	op = net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMaxEntropyThreshold.class)
public <T extends RealType<T>, B extends BooleanType<B>> IterableInterval<B>
	maxEntropy(final IterableInterval<B> out,
		final RandomAccessibleInterval<T> in, final Shape shape,
		final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBoundsFactory)
{
	@SuppressWarnings("unchecked")
	final IterableInterval<B> result = (IterableInterval<B>) ops().run(
		net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMaxEntropyThreshold.class,
		out, in, shape, outOfBoundsFactory);
	return result;
}
 

@OpMethod(
	op = net.imagej.ops.threshold.localSauvola.LocalSauvolaThresholdIntegral.class)
public <T extends RealType<T>> IterableInterval<BitType>
	localSauvolaThreshold(final IterableInterval<BitType> out,
		final RandomAccessibleInterval<T> in, final RectangleShape shape,
		final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBounds)
{
	@SuppressWarnings("unchecked")
	final IterableInterval<BitType> result = (IterableInterval<BitType>) ops()
		.run(net.imagej.ops.Ops.Threshold.LocalSauvolaThreshold.class, out, in,
			shape, outOfBounds);
	return result;
}
 

@OpMethod(
	op = net.imagej.ops.threshold.localSauvola.LocalSauvolaThresholdIntegral.class)
public <T extends RealType<T>> IterableInterval<BitType>
	localSauvolaThreshold(final IterableInterval<BitType> out,
		final RandomAccessibleInterval<T> in, final RectangleShape shape,
		final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBounds,
		final double k)
{
	@SuppressWarnings("unchecked")
	final IterableInterval<BitType> result = (IterableInterval<BitType>) ops()
		.run(net.imagej.ops.Ops.Threshold.LocalSauvolaThreshold.class, out, in,
			shape, outOfBounds, k);
	return result;
}
 

@Override
public RandomAccessibleInterval<O> calculate(
	final RandomAccessibleInterval<I> img,
	final RandomAccessibleInterval<K> kernel)
{

	RandomAccessibleInterval<O> out = createOutput(img, kernel);

	if (obf == null) {
		obf = new OutOfBoundsConstantValueFactory<>(Util.getTypeFromInterval(in())
			.createVariable());
	}

	// extend the input
	RandomAccessibleInterval<I> extendedIn = Views.interval(Views.extend(img,
		obf), img);

	OutOfBoundsFactory<O, RandomAccessibleInterval<O>> obfOutput =
		new OutOfBoundsConstantValueFactory<>(Util.getTypeFromInterval(out)
			.createVariable());

	// extend the output
	RandomAccessibleInterval<O> extendedOut = Views.interval(Views.extend(out,
		obfOutput), out);

	// ops().filter().convolve(extendedOut, extendedIn, kernel);
	convolver.compute(extendedIn, extendedOut);

	return out;
}
 

@OpMethod(op = net.imagej.ops.threshold.localSauvola.LocalSauvolaThreshold.class)
public <T extends RealType<T>> IterableInterval<BitType> localSauvolaThreshold(
	final IterableInterval<BitType> out,
	final RandomAccessibleInterval<T> in, final Shape shape,
	final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBounds)
{
	@SuppressWarnings("unchecked")
	final IterableInterval<BitType> result =
		(IterableInterval<BitType>) ops().run(
			net.imagej.ops.Ops.Threshold.LocalSauvolaThreshold.class, out, in, shape,
			outOfBounds);
	return result;
}
 

@OpMethod(op = net.imagej.ops.threshold.localSauvola.LocalSauvolaThreshold.class)
public <T extends RealType<T>> IterableInterval<BitType> localSauvolaThreshold(
	final IterableInterval<BitType> out,
	final RandomAccessibleInterval<T> in, final Shape shape,
	final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBounds,
	final double k)
{
	@SuppressWarnings("unchecked")
	final IterableInterval<BitType> result =
		(IterableInterval<BitType>) ops().run(
			net.imagej.ops.Ops.Threshold.LocalSauvolaThreshold.class, out, in, shape,
			outOfBounds, k);
	return result;
}
 

@OpMethod(op = net.imagej.ops.threshold.localSauvola.LocalSauvolaThreshold.class)
public <T extends RealType<T>> IterableInterval<BitType> localSauvolaThreshold(
	final IterableInterval<BitType> out,
	final RandomAccessibleInterval<T> in, final Shape shape,
	final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBounds,
	final double k, final double r)
{
	@SuppressWarnings("unchecked")
	final IterableInterval<BitType> result =
		(IterableInterval<BitType>) ops().run(
			net.imagej.ops.Ops.Threshold.LocalSauvolaThreshold.class, out, in, shape,
			outOfBounds, k, r);
	return result;
}
 

@OpMethod(
	op = net.imagej.ops.threshold.localPhansalkar.LocalPhansalkarThresholdIntegral.class)
public <T extends RealType<T>> IterableInterval<BitType>
	localPhansalkarThreshold(final IterableInterval<BitType> out,
		final RandomAccessibleInterval<T> in, final RectangleShape shape,
		final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBounds)
{
	@SuppressWarnings("unchecked")
	final IterableInterval<BitType> result = (IterableInterval<BitType>) ops()
		.run(net.imagej.ops.Ops.Threshold.LocalPhansalkarThreshold.class, out, in,
			shape, outOfBounds);
	return result;
}