org.hl7.fhir.dstu3.model.CodeType Java Examples

public static Stream<Arguments> r5PrimitiveTypes() {
  return Stream.of(
    Arguments.arguments(org.hl7.fhir.r5.model.BooleanType.class.getSimpleName(), new org.hl7.fhir.r5.model.BooleanType()),
    Arguments.arguments(org.hl7.fhir.r5.model.CodeType.class.getSimpleName(), new org.hl7.fhir.r5.model.CodeType()),
    Arguments.arguments(org.hl7.fhir.r5.model.DateType.class.getSimpleName(), new org.hl7.fhir.r5.model.DateType()),
    Arguments.arguments(org.hl7.fhir.r5.model.DateTimeType.class.getSimpleName(), new org.hl7.fhir.r5.model.DateTimeType()),
    Arguments.arguments(org.hl7.fhir.r5.model.DecimalType.class.getSimpleName(), new org.hl7.fhir.r5.model.DecimalType()),
    Arguments.arguments(org.hl7.fhir.r5.model.InstantType.class.getSimpleName(), new org.hl7.fhir.r5.model.InstantType()),
    Arguments.arguments(org.hl7.fhir.r5.model.PositiveIntType.class.getSimpleName(), new org.hl7.fhir.r5.model.PositiveIntType()),
    Arguments.arguments(org.hl7.fhir.r5.model.UnsignedIntType.class.getSimpleName(), new org.hl7.fhir.r5.model.UnsignedIntType()),
    Arguments.arguments(org.hl7.fhir.r5.model.IntegerType.class.getSimpleName(), new org.hl7.fhir.r5.model.IntegerType()),
    Arguments.arguments(org.hl7.fhir.r5.model.MarkdownType.class.getSimpleName(), new org.hl7.fhir.r5.model.MarkdownType()),
    Arguments.arguments(org.hl7.fhir.r5.model.OidType.class.getSimpleName(), new org.hl7.fhir.r5.model.OidType()),
    Arguments.arguments(org.hl7.fhir.r5.model.StringType.class.getSimpleName(), new org.hl7.fhir.r5.model.StringType()),
    Arguments.arguments(org.hl7.fhir.r5.model.TimeType.class.getSimpleName(), new org.hl7.fhir.r5.model.TimeType()),
    Arguments.arguments(org.hl7.fhir.r5.model.UuidType.class.getSimpleName(), new org.hl7.fhir.r5.model.UuidType()),
    Arguments.arguments(org.hl7.fhir.r5.model.Base64BinaryType.class.getSimpleName(), new org.hl7.fhir.r5.model.Base64BinaryType()),
    Arguments.arguments(org.hl7.fhir.r5.model.UriType.class.getSimpleName(), new org.hl7.fhir.r5.model.UriType()));
}
 

public static Stream<Arguments> dstu3PrimitiveTypes() {
  return Stream.of(
    Arguments.arguments(BooleanType.class.getSimpleName(), new BooleanType()),
    Arguments.arguments(CodeType.class.getSimpleName(), new CodeType()),
    Arguments.arguments(DateType.class.getSimpleName(), new DateType()),
    Arguments.arguments(DateTimeType.class.getSimpleName(), new DateTimeType()),
    Arguments.arguments(DecimalType.class.getSimpleName(), new DecimalType()),
    Arguments.arguments(InstantType.class.getSimpleName(), new InstantType()),
    Arguments.arguments(PositiveIntType.class.getSimpleName(), new PositiveIntType()),
    Arguments.arguments(UnsignedIntType.class.getSimpleName(), new UnsignedIntType()),
    Arguments.arguments(IntegerType.class.getSimpleName(), new IntegerType()),
    Arguments.arguments(MarkdownType.class.getSimpleName(), new MarkdownType()),
    Arguments.arguments(OidType.class.getSimpleName(), new OidType()),
    Arguments.arguments(StringType.class.getSimpleName(), new StringType()),
    Arguments.arguments(TimeType.class.getSimpleName(), new TimeType()),
    Arguments.arguments(UuidType.class.getSimpleName(), new UuidType()),
    Arguments.arguments(Base64BinaryType.class.getSimpleName(), new Base64BinaryType()),
    Arguments.arguments(UriType.class.getSimpleName(), new UriType()));
}
 

public static Stream<Arguments> r4PrimitiveTypes() {
  return Stream.of(
    Arguments.arguments(org.hl7.fhir.r4.model.BooleanType.class.getSimpleName(), new org.hl7.fhir.r4.model.BooleanType()),
    Arguments.arguments(org.hl7.fhir.r4.model.CodeType.class.getSimpleName(), new org.hl7.fhir.r4.model.CodeType()),
    Arguments.arguments(org.hl7.fhir.r4.model.DateType.class.getSimpleName(), new org.hl7.fhir.r4.model.DateType()),
    Arguments.arguments(org.hl7.fhir.r4.model.DateTimeType.class.getSimpleName(), new org.hl7.fhir.r4.model.DateTimeType()),
    Arguments.arguments(org.hl7.fhir.r4.model.DecimalType.class.getSimpleName(), new org.hl7.fhir.r4.model.DecimalType()),
    Arguments.arguments(org.hl7.fhir.r4.model.InstantType.class.getSimpleName(), new org.hl7.fhir.r4.model.InstantType()),
    Arguments.arguments(org.hl7.fhir.r4.model.PositiveIntType.class.getSimpleName(), new org.hl7.fhir.r4.model.PositiveIntType()),
    Arguments.arguments(org.hl7.fhir.r4.model.UnsignedIntType.class.getSimpleName(), new org.hl7.fhir.r4.model.UnsignedIntType()),
    Arguments.arguments(org.hl7.fhir.r4.model.IntegerType.class.getSimpleName(), new org.hl7.fhir.r4.model.IntegerType()),
    Arguments.arguments(org.hl7.fhir.r4.model.MarkdownType.class.getSimpleName(), new org.hl7.fhir.r4.model.MarkdownType()),
    Arguments.arguments(org.hl7.fhir.r4.model.OidType.class.getSimpleName(), new org.hl7.fhir.r4.model.OidType()),
    Arguments.arguments(org.hl7.fhir.r4.model.StringType.class.getSimpleName(), new org.hl7.fhir.r4.model.StringType()),
    Arguments.arguments(org.hl7.fhir.r4.model.TimeType.class.getSimpleName(), new org.hl7.fhir.r4.model.TimeType()),
    Arguments.arguments(org.hl7.fhir.r4.model.UuidType.class.getSimpleName(), new org.hl7.fhir.r4.model.UuidType()),
    Arguments.arguments(org.hl7.fhir.r4.model.Base64BinaryType.class.getSimpleName(), new org.hl7.fhir.r4.model.Base64BinaryType()),
    Arguments.arguments(org.hl7.fhir.r4.model.UriType.class.getSimpleName(), new org.hl7.fhir.r4.model.UriType()));
}
 

public static String readStringExtension(Element c, String uri) {
  Extension ex = ExtensionHelper.getExtension(c, uri);
  if (ex == null)
    return null;
  if (ex.getValue() instanceof UriType)
    return ((UriType) ex.getValue()).getValue();
  if (ex.getValue() instanceof CodeType)
    return ((CodeType) ex.getValue()).getValue();
  if (ex.getValue() instanceof IntegerType)
    return ((IntegerType) ex.getValue()).asStringValue();
  if ((ex.getValue() instanceof MarkdownType))
    return ((MarkdownType) ex.getValue()).getValue();
  if (!(ex.getValue() instanceof StringType))
    return null;
  return ((StringType) ex.getValue()).getValue();
}
 

public static String readStringExtension(DomainResource c, String uri) {
  Extension ex = getExtension(c, uri);
  if (ex == null)
    return null;
  if ((ex.getValue() instanceof StringType))
    return ((StringType) ex.getValue()).getValue();
  if ((ex.getValue() instanceof UriType))
    return ((UriType) ex.getValue()).getValue();
  if (ex.getValue() instanceof CodeType)
    return ((CodeType) ex.getValue()).getValue();
  if (ex.getValue() instanceof IntegerType)
    return ((IntegerType) ex.getValue()).asStringValue();
  if ((ex.getValue() instanceof MarkdownType))
    return ((MarkdownType) ex.getValue()).getValue();
  return null;
}
 

public static Stream<Arguments> dstu3PrimitiveTypes() {
  return Stream.of(
    Arguments.arguments(BooleanType.class.getSimpleName(), new BooleanType()),
    Arguments.arguments(CodeType.class.getSimpleName(), new CodeType()),
    Arguments.arguments(DateType.class.getSimpleName(), new DateType()),
    Arguments.arguments(DateTimeType.class.getSimpleName(), new DateTimeType()),
    Arguments.arguments(DecimalType.class.getSimpleName(), new DecimalType()),
    Arguments.arguments(InstantType.class.getSimpleName(), new InstantType()),
    Arguments.arguments(PositiveIntType.class.getSimpleName(), new PositiveIntType()),
    Arguments.arguments(UnsignedIntType.class.getSimpleName(), new UnsignedIntType()),
    Arguments.arguments(IntegerType.class.getSimpleName(), new IntegerType()),
    Arguments.arguments(MarkdownType.class.getSimpleName(), new MarkdownType()),
    Arguments.arguments(OidType.class.getSimpleName(), new OidType()),
    Arguments.arguments(StringType.class.getSimpleName(), new StringType()),
    Arguments.arguments(TimeType.class.getSimpleName(), new TimeType()),
    Arguments.arguments(UuidType.class.getSimpleName(), new UuidType()),
    Arguments.arguments(Base64BinaryType.class.getSimpleName(), new Base64BinaryType()),
    Arguments.arguments(UriType.class.getSimpleName(), new UriType()));
}
 

public static String getLanguageTranslation(Element element, String lang) {
  for (Extension e : element.getExtension()) {
    if (e.getUrl().equals(EXT_TRANSLATION)) {
      Extension e1 = ExtensionHelper.getExtension(e, "lang");

      if (e1 != null && e1.getValue() instanceof CodeType && ((CodeType) e.getValue()).getValue().equals(lang)) {
        e1 = ExtensionHelper.getExtension(e, "content");
        return ((StringType) e.getValue()).getValue();
      }
    }
  }
  return null;
}
 

public static void main(String[] args) {
     Example32_ExtendedPatient pat = new Example32_ExtendedPatient();
	pat.addName().setFamily("Simpson").addGiven("Homer");

	pat.setEyeColour(new CodeType("blue"));

	IParser p = FhirContext.forDstu3().newXmlParser().setPrettyPrint(true);
	String encoded = p.encodeResourceToString(pat);
	
	System.out.println(encoded);
}
 

/**
 * The "@Read" annotation indicates that this method supports the read operation. It takes one argument, the Resource type being returned.
 * 
 * @param theId
 *            The read operation takes one parameter, which must be of type IdDt and must be annotated with the "@Read.IdParam" annotation.
 * @return Returns a resource matching this identifier, or null if none exists.
 */
@Read()
public MyOrganization getResourceById(@IdParam IdType theId) {
	
	/*
	 * We only support one organization, so the follwing
	 * exception causes an HTTP 404 response if the 
	 * ID of "1" isn't used.
	 */
	if (!"1".equals(theId.getValue())) {
		throw new ResourceNotFoundException(theId);
	}
	
	MyOrganization retVal = new MyOrganization();
	retVal.setId("1");
	retVal.addIdentifier().setSystem("urn:example:orgs").setValue("FooOrganization");
	retVal.addAddress().addLine("123 Fake Street").setCity("Toronto");
	retVal.addTelecom().setUse(ContactPointUse.WORK).setValue("1-888-123-4567");
	
	// Populate the first, primitive extension
	retVal.setBillingCode(new CodeType("00102-1"));
	
	// The second extension is repeatable and takes a block type
	MyOrganization.EmergencyContact contact = new MyOrganization.EmergencyContact();
	contact.setActive(new BooleanType(true));
	contact.setContact(new ContactPoint());
	retVal.getEmergencyContact().add(contact);
	
	return retVal;
}
 

public boolean generate(ResourceContext rcontext, OperationDefinition opd) throws EOperationOutcome, FHIRException, IOException {
   XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
   x.h2().addText(opd.getName());
   x.para().addText(Utilities.capitalize(opd.getKind().toString())+": "+opd.getName());
   x.para().tx("The official URL for this operation definition is: ");
   x.pre().tx(opd.getUrl());
   addMarkdown(x, opd.getDescription());

   if (opd.getSystem())
     x.para().tx("URL: [base]/$"+opd.getCode());
   for (CodeType c : opd.getResource()) {
     if (opd.getType())
       x.para().tx("URL: [base]/"+c.getValue()+"/$"+opd.getCode());
     if (opd.getInstance())
       x.para().tx("URL: [base]/"+c.getValue()+"/[id]/$"+opd.getCode());
   }

   x.para().tx("Parameters");
   XhtmlNode tbl = x.table( "grid");
   XhtmlNode tr = tbl.tr();
   tr.td().b().tx("Use");
   tr.td().b().tx("Name");
   tr.td().b().tx("Cardinality");
   tr.td().b().tx("Type");
   tr.td().b().tx("Binding");
   tr.td().b().tx("Documentation");
   for (OperationDefinitionParameterComponent p : opd.getParameter()) {
     genOpParam(rcontext, tbl, "", p);
   }
   addMarkdown(x, opd.getComment());
   inject(opd, x, NarrativeStatus.GENERATED);
   return true;
}
 

private String gen(Extension extension) throws DefinitionException {
if (extension.getValue() instanceof CodeType)
	return ((CodeType) extension.getValue()).getValue();
if (extension.getValue() instanceof Coding)
	return gen((Coding) extension.getValue());

 throw new DefinitionException("Unhandled type "+extension.getValue().getClass().getName());
}
 

public static boolean hasLanguageTranslation(Element element, String lang) {
  for (Extension e : element.getExtension()) {
    if (e.getUrl().equals(EXT_TRANSLATION)) {
      Extension e1 = ExtensionHelper.getExtension(e, "lang");

      if (e1 != null && e1.getValue() instanceof CodeType && ((CodeType) e.getValue()).getValue().equals(lang))
        return true;
    }
  }
  return false;
}
 

public static void setCodeExtension(DomainResource resource, String uri, String value) {
  Extension ext = getExtension(resource, uri);
  if (ext != null)
    ext.setValue(new CodeType(value));
  else
    resource.getExtension().add(new Extension(new UriType(uri)).setValue(new CodeType(value)));
}
 

public static List<CodeType> getSubsumes(ConceptDefinitionComponent c) {
  List<CodeType> res = new ArrayList<CodeType>();

  for (Extension e : c.getExtension()) {
    if (EXT_SUBSUMES.equals(e.getUrl()))
      res.add((CodeType) e.getValue());
  }
  return res;
}
 

public static Extension makeIssueSource(Source source) {
  Extension ex = new Extension();
  // todo: write this up and get it published with the pack (and handle the redirect?)
  ex.setUrl(ToolingExtensions.EXT_ISSUE_SOURCE);
  CodeType c = new CodeType();
  c.setValue(source.toString());
  ex.setValue(c);
  return ex;
}
 

/**
 * we're going to slice Patient.identifier
 */
private void testSlicingSimple() throws EOperationOutcome, Exception {
  
  StructureDefinition focus = new StructureDefinition();
  StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
  focus.setUrl(Utilities.makeUuidUrn());
  focus.setBaseDefinition(base.getUrl());
  focus.setType(base.getType());
  focus.setDerivation(TypeDerivationRule.CONSTRAINT);
  
  // set the slice up
  ElementDefinition id = focus.getDifferential().addElement();
  id.setPath("Patient.identifier");
  id.getSlicing().setOrdered(false).setRules(SlicingRules.OPEN).addDiscriminator().setPath("use").setType(DiscriminatorType.VALUE);
  
  // first slice: 
  id = focus.getDifferential().addElement();
  id.setPath("Patient.identifier");
  id.setSliceName("name1");
  id = focus.getDifferential().addElement();
  id.setPath("Patient.identifier.use");
  id.setFixed(new CodeType("usual"));
  
  // second slice:
  id = focus.getDifferential().addElement();
  id.setPath("Patient.identifier");
  id.setSliceName("name2");
  id = focus.getDifferential().addElement();
  id.setPath("Patient.identifier.use");
  id.setFixed(new CodeType("official"));
  
  
  List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
  new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test" );

  // 18 different: identifier + 8 inner children * 2 
  boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size() - 18;
  for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
    if (ok) {
      ElementDefinition b = base.getSnapshot().getElement().get(i);
      ElementDefinition f = focus.getSnapshot().getElement().get(i <= 9 ? i : i + 18);
      if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath())) 
        ok = false;
      else {
        f.setBase(null);
        if (f.getPath().equals("Patient.identifier")) {
          ok = f.hasSlicing();
          if (ok)
            f.setSlicing(null);
        }            
        ok = Base.compareDeep(b, f, true);
      }
    }
  }
  // now, check that the slices we skipped are correct:
  for (int i = 10; i <= 18; i++) {
    if (ok) {
      ElementDefinition d1 = focus.getSnapshot().getElement().get(i);
      ElementDefinition d2 = focus.getSnapshot().getElement().get(i+9);
      if (d1.getPath().equals("Patient.identifier.use")) {
        ok = d1.hasFixed() && d2.hasFixed() && !Base.compareDeep(d1.getFixed(), d2.getFixed(), true);
        if (ok) {
          d1.setFixed(null);
          d2.setFixed(null);
        }
      }
      if (d1.getPath().equals("Patient.identifier")) {
        ok = d1.hasSliceName() && d2.hasSliceName() && !Base.compareDeep(d1.getSliceNameElement(), d2.getSliceNameElement(), true);
        if (ok) {
          d1.setSliceName(null);
          d2.setSliceName(null);
        }
      }
      ok = Base.compareDeep(d1, d2, true);
    }
  }
  // for throughness, we could check against identifier too, but this is not done now.
  
  if (!ok) {
    compareXml(base, focus);
    throw new FHIRException("Snap shot generation slicing failed");
  } else 
    System.out.println("Snap shot generation slicing passed");
  
}
 

/**
 * Returns a new Patient for testing.
 *
 * @return a FHIR Patient for testing.
 */
public static Patient newPatient() {

  Patient patient = new Patient();

  patient.setId("test-patient");
  patient.setGender(AdministrativeGender.MALE);
  patient.setActive(true);
  patient.setMultipleBirth(new IntegerType(1));

  patient.setBirthDateElement(new DateType("1945-01-02"));

  patient.addGeneralPractitioner().setReference("Practitioner/12345");

  Identifier practitionerIdentifier = new Identifier();
  practitionerIdentifier.setId("P123456");
  practitionerIdentifier.getAssigner().setReference("Organization/123456");
  patient.getGeneralPractitionerFirstRep().setIdentifier(practitionerIdentifier);

  Address address = patient.addAddress();
  address.addLine("123 Fake Street");
  address.setCity("Chicago");
  address.setState("IL");
  address.setDistrict("12345");

  Extension birthSex = patient.addExtension();

  birthSex.setUrl(US_CORE_BIRTHSEX);
  birthSex.setValue(new CodeType("M"));

  Extension ethnicity = patient.addExtension();
  ethnicity.setUrl(US_CORE_ETHNICITY);
  ethnicity.setValue(null);

  Coding ombCoding = new Coding();

  ombCoding.setSystem("urn:oid:2.16.840.1.113883.6.238");
  ombCoding.setCode("2135-2");
  ombCoding.setDisplay("Hispanic or Latino");

  // Add category to ethnicity extension
  Extension ombCategory = ethnicity.addExtension();

  ombCategory.setUrl("ombCategory");
  ombCategory.setValue(ombCoding);

  // Add multiple detailed sub-extension to ethnicity extension
  Coding detailedCoding1 = new Coding();
  detailedCoding1.setSystem("urn:oid:2.16.840.1.113883.6.238");
  detailedCoding1.setCode("2165-9");
  detailedCoding1.setDisplay("South American");

  Coding detailedCoding2 = new Coding();
  detailedCoding2.setSystem("urn:oid:2.16.840.1.113883.6.238");
  detailedCoding2.setCode("2166-7");
  detailedCoding2.setDisplay("Argentinean");

  final Extension detailed1 = ethnicity.addExtension();
  detailed1.setUrl("detailed");
  detailed1.setValue(detailedCoding1);

  final Extension detailed2 = ethnicity.addExtension();
  detailed2.setUrl("detailed");
  detailed2.setValue(detailedCoding2);

  // Add text display to ethnicity extension
  Extension ethnicityText = ethnicity.addExtension();
  ethnicityText.setUrl("text");
  ethnicityText.setValue(new StringType("Not Hispanic or Latino"));

  // Human Name
  HumanName humanName = new HumanName();
  humanName.setFamily("family_name");
  humanName.addGiven("given_name");
  humanName.addGiven("middle_name");
  patient.addName(humanName);

  return patient;
}
 

public CodeType getEquivalence() {
	return myEquivalence;
}
 

public void setEquivalence(CodeType theEquivalence) {
	myEquivalence = theEquivalence;
}
 

public void setBillingCode(CodeType theBillingCode) {
   myBillingCode = theBillingCode;
}
 

private boolean isCoded(Type fixed) {
  return (fixed instanceof Coding) || (fixed instanceof CodeableConcept) || (fixed instanceof CodeType) || (fixed instanceof Quantity);
}
 

protected void decorateCode(Complex t, CodeType value) {
}
 

public void setEyeColour(CodeType theEyeColour) {
	myEyeColour = theEyeColour;
}
 

public static void main(String[] args) {

      Example32_ExtendedPatient pat = new Example32_ExtendedPatient();
      pat.addName().setFamily("Simpson").addGiven("Homer");
      pat.setEyeColour(new CodeType("blue"));

      IParser p = FhirContext.forDstu3().newXmlParser().setPrettyPrint(true);
      String encoded = p.encodeResourceToString(pat);

      System.out.println(encoded);

   }