org.apache.commons.math.stat.descriptive.summary.SumOfSquares Java Examples
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Example #1
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #2
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #3
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #4
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #5
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #6
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #7
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #8
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #9
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #10
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #11
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #12
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #13
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #14
Source File: MultivariateSummaryStatistics.java From cacheonix-core with GNU Lesser General Public License v2.1 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #15
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #16
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #17
Source File: MultivariateSummaryStatistics.java From astor with GNU General Public License v2.0 | 6 votes |
/** * Construct a MultivariateSummaryStatistics instance * @param k dimension of the data * @param isCovarianceBiasCorrected if true, the unbiased sample * covariance is computed, otherwise the biased population covariance * is computed */ public MultivariateSummaryStatistics(int k, boolean isCovarianceBiasCorrected) { this.k = k; sumImpl = new StorelessUnivariateStatistic[k]; sumSqImpl = new StorelessUnivariateStatistic[k]; minImpl = new StorelessUnivariateStatistic[k]; maxImpl = new StorelessUnivariateStatistic[k]; sumLogImpl = new StorelessUnivariateStatistic[k]; geoMeanImpl = new StorelessUnivariateStatistic[k]; meanImpl = new StorelessUnivariateStatistic[k]; for (int i = 0; i < k; ++i) { sumImpl[i] = new Sum(); sumSqImpl[i] = new SumOfSquares(); minImpl[i] = new Min(); maxImpl[i] = new Max(); sumLogImpl[i] = new SumOfLogs(); geoMeanImpl[i] = new GeometricMean(); meanImpl[i] = new Mean(); } covarianceImpl = new VectorialCovariance(k, isCovarianceBiasCorrected); }
Example #18
Source File: SummaryStatisticsImpl.java From astor with GNU General Public License v2.0 | 5 votes |
/** * Construct a SummaryStatistics */ public SummaryStatisticsImpl() { sum = new Sum(); sumsq = new SumOfSquares(); min = new Min(); max = new Max(); sumLog = new SumOfLogs(); geoMean = new GeometricMean(); secondMoment = new SecondMoment(); }
Example #19
Source File: SummaryStatistics.java From astor with GNU General Public License v2.0 | 4 votes |
/** * Copies source to dest. * <p>Neither source nor dest can be null.</p> * * @param source SummaryStatistics to copy * @param dest SummaryStatistics to copy to * @throws NullArgumentException if either source or dest is null */ public static void copy(SummaryStatistics source, SummaryStatistics dest) throws NullArgumentException { MathUtils.checkNotNull(source); MathUtils.checkNotNull(dest); dest.maxImpl = source.maxImpl.copy(); dest.meanImpl = source.meanImpl.copy(); dest.minImpl = source.minImpl.copy(); dest.sumImpl = source.sumImpl.copy(); dest.varianceImpl = source.varianceImpl.copy(); dest.sumLogImpl = source.sumLogImpl.copy(); dest.sumsqImpl = source.sumsqImpl.copy(); if (source.getGeoMeanImpl() instanceof GeometricMean) { // Keep geoMeanImpl, sumLogImpl in synch dest.geoMeanImpl = new GeometricMean((SumOfLogs) dest.sumLogImpl); } else { dest.geoMeanImpl = source.geoMeanImpl.copy(); } SecondMoment.copy(source.secondMoment, dest.secondMoment); dest.n = source.n; // Make sure that if stat == statImpl in source, same // holds in dest; otherwise copy stat if (source.geoMean == source.geoMeanImpl) { dest.geoMean = (GeometricMean) dest.geoMeanImpl; } else { GeometricMean.copy(source.geoMean, dest.geoMean); } if (source.max == source.maxImpl) { dest.max = (Max) dest.maxImpl; } else { Max.copy(source.max, dest.max); } if (source.mean == source.meanImpl) { dest.mean = (Mean) dest.meanImpl; } else { Mean.copy(source.mean, dest.mean); } if (source.min == source.minImpl) { dest.min = (Min) dest.minImpl; } else { Min.copy(source.min, dest.min); } if (source.sum == source.sumImpl) { dest.sum = (Sum) dest.sumImpl; } else { Sum.copy(source.sum, dest.sum); } if (source.variance == source.varianceImpl) { dest.variance = (Variance) dest.varianceImpl; } else { Variance.copy(source.variance, dest.variance); } if (source.sumLog == source.sumLogImpl) { dest.sumLog = (SumOfLogs) dest.sumLogImpl; } else { SumOfLogs.copy(source.sumLog, dest.sumLog); } if (source.sumsq == source.sumsqImpl) { dest.sumsq = (SumOfSquares) dest.sumsqImpl; } else { SumOfSquares.copy(source.sumsq, dest.sumsq); } }
Example #20
Source File: OneWayAnovaImpl.java From astor with GNU General Public License v2.0 | 4 votes |
/** * This method actually does the calculations (except P-value). * * @param categoryData <code>Collection</code> of <code>double[]</code> * arrays each containing data for one category * @return computed AnovaStats * @throws IllegalArgumentException if categoryData does not meet * preconditions specified in the interface definition * @throws MathException if an error occurs computing the Anova stats */ private AnovaStats anovaStats(Collection<double[]> categoryData) throws IllegalArgumentException, MathException { // check if we have enough categories if (categoryData.size() < 2) { throw MathRuntimeException.createIllegalArgumentException( LocalizedFormats.TWO_OR_MORE_CATEGORIES_REQUIRED, categoryData.size()); } // check if each category has enough data and all is double[] for (double[] array : categoryData) { if (array.length <= 1) { throw MathRuntimeException.createIllegalArgumentException( LocalizedFormats.TWO_OR_MORE_VALUES_IN_CATEGORY_REQUIRED, array.length); } } int dfwg = 0; double sswg = 0; Sum totsum = new Sum(); SumOfSquares totsumsq = new SumOfSquares(); int totnum = 0; for (double[] data : categoryData) { Sum sum = new Sum(); SumOfSquares sumsq = new SumOfSquares(); int num = 0; for (int i = 0; i < data.length; i++) { double val = data[i]; // within category num++; sum.increment(val); sumsq.increment(val); // for all categories totnum++; totsum.increment(val); totsumsq.increment(val); } dfwg += num - 1; double ss = sumsq.getResult() - sum.getResult() * sum.getResult() / num; sswg += ss; } double sst = totsumsq.getResult() - totsum.getResult() * totsum.getResult()/totnum; double ssbg = sst - sswg; int dfbg = categoryData.size() - 1; double msbg = ssbg/dfbg; double mswg = sswg/dfwg; double F = msbg/mswg; return new AnovaStats(dfbg, dfwg, F); }
Example #21
Source File: OneWayAnovaImpl.java From astor with GNU General Public License v2.0 | 4 votes |
/** * This method actually does the calculations (except P-value). * * @param categoryData <code>Collection</code> of <code>double[]</code> * arrays each containing data for one category * @return computed AnovaStats * @throws IllegalArgumentException if categoryData does not meet * preconditions specified in the interface definition * @throws MathException if an error occurs computing the Anova stats */ private AnovaStats anovaStats(Collection<double[]> categoryData) throws IllegalArgumentException, MathException { // check if we have enough categories if (categoryData.size() < 2) { throw MathRuntimeException.createIllegalArgumentException( "two or more categories required, got {0}", categoryData.size()); } // check if each category has enough data and all is double[] for (double[] array : categoryData) { if (array.length <= 1) { throw MathRuntimeException.createIllegalArgumentException( "two or more values required in each category, one has {0}", array.length); } } int dfwg = 0; double sswg = 0; Sum totsum = new Sum(); SumOfSquares totsumsq = new SumOfSquares(); int totnum = 0; for (double[] data : categoryData) { Sum sum = new Sum(); SumOfSquares sumsq = new SumOfSquares(); int num = 0; for (int i = 0; i < data.length; i++) { double val = data[i]; // within category num++; sum.increment(val); sumsq.increment(val); // for all categories totnum++; totsum.increment(val); totsumsq.increment(val); } dfwg += num - 1; double ss = sumsq.getResult() - sum.getResult() * sum.getResult() / num; sswg += ss; } double sst = totsumsq.getResult() - totsum.getResult() * totsum.getResult()/totnum; double ssbg = sst - sswg; int dfbg = categoryData.size() - 1; double msbg = ssbg/dfbg; double mswg = sswg/dfwg; double F = msbg/mswg; return new AnovaStats(dfbg, dfwg, F); }
Example #22
Source File: SummaryStatistics.java From astor with GNU General Public License v2.0 | 4 votes |
/** * Copies source to dest. * <p>Neither source nor dest can be null.</p> * * @param source SummaryStatistics to copy * @param dest SummaryStatistics to copy to * @throws NullPointerException if either source or dest is null */ public static void copy(SummaryStatistics source, SummaryStatistics dest) { dest.maxImpl = source.maxImpl.copy(); dest.meanImpl = source.meanImpl.copy(); dest.minImpl = source.minImpl.copy(); dest.sumImpl = source.sumImpl.copy(); dest.varianceImpl = source.varianceImpl.copy(); dest.sumLogImpl = source.sumLogImpl.copy(); dest.sumsqImpl = source.sumsqImpl.copy(); if (source.getGeoMeanImpl() instanceof GeometricMean) { // Keep geoMeanImpl, sumLogImpl in synch dest.geoMeanImpl = new GeometricMean((SumOfLogs) dest.sumLogImpl); } else { dest.geoMeanImpl = source.geoMeanImpl.copy(); } SecondMoment.copy(source.secondMoment, dest.secondMoment); dest.n = source.n; // Make sure that if stat == statImpl in source, same // holds in dest; otherwise copy stat if (source.geoMean == source.geoMeanImpl) { dest.geoMean = (GeometricMean) dest.geoMeanImpl; } else { GeometricMean.copy(source.geoMean, dest.geoMean); } if (source.max == source.maxImpl) { dest.max = (Max) dest.maxImpl; } else { Max.copy(source.max, dest.max); } if (source.mean == source.meanImpl) { dest.mean = (Mean) dest.meanImpl; } else { Mean.copy(source.mean, dest.mean); } if (source.min == source.minImpl) { dest.min = (Min) dest.minImpl; } else { Min.copy(source.min, dest.min); } if (source.sum == source.sumImpl) { dest.sum = (Sum) dest.sumImpl; } else { Sum.copy(source.sum, dest.sum); } if (source.variance == source.varianceImpl) { dest.variance = (Variance) dest.varianceImpl; } else { Variance.copy(source.variance, dest.variance); } if (source.sumLog == source.sumLogImpl) { dest.sumLog = (SumOfLogs) dest.sumLogImpl; } else { SumOfLogs.copy(source.sumLog, dest.sumLog); } if (source.sumsq == source.sumsqImpl) { dest.sumsq = (SumOfSquares) dest.sumsqImpl; } else { SumOfSquares.copy(source.sumsq, dest.sumsq); } }
Example #23
Source File: SummaryStatistics.java From astor with GNU General Public License v2.0 | 4 votes |
/** * Copies source to dest. * <p>Neither source nor dest can be null.</p> * * @param source SummaryStatistics to copy * @param dest SummaryStatistics to copy to * @throws NullPointerException if either source or dest is null */ public static void copy(SummaryStatistics source, SummaryStatistics dest) { dest.maxImpl = source.maxImpl.copy(); dest.meanImpl = source.meanImpl.copy(); dest.minImpl = source.minImpl.copy(); dest.sumImpl = source.sumImpl.copy(); dest.varianceImpl = source.varianceImpl.copy(); dest.sumLogImpl = source.sumLogImpl.copy(); dest.sumsqImpl = source.sumsqImpl.copy(); if (source.getGeoMeanImpl() instanceof GeometricMean) { // Keep geoMeanImpl, sumLogImpl in synch dest.geoMeanImpl = new GeometricMean((SumOfLogs) dest.sumLogImpl); } else { dest.geoMeanImpl = source.geoMeanImpl.copy(); } SecondMoment.copy(source.secondMoment, dest.secondMoment); dest.n = source.n; // Make sure that if stat == statImpl in source, same // holds in dest; otherwise copy stat if (source.geoMean == source.geoMeanImpl) { dest.geoMean = (GeometricMean) dest.geoMeanImpl; } else { GeometricMean.copy(source.geoMean, dest.geoMean); } if (source.max == source.maxImpl) { dest.max = (Max) dest.maxImpl; } else { Max.copy(source.max, dest.max); } if (source.mean == source.meanImpl) { dest.mean = (Mean) dest.meanImpl; } else { Mean.copy(source.mean, dest.mean); } if (source.min == source.minImpl) { dest.min = (Min) dest.minImpl; } else { Min.copy(source.min, dest.min); } if (source.sum == source.sumImpl) { dest.sum = (Sum) dest.sumImpl; } else { Sum.copy(source.sum, dest.sum); } if (source.variance == source.varianceImpl) { dest.variance = (Variance) dest.varianceImpl; } else { Variance.copy(source.variance, dest.variance); } if (source.sumLog == source.sumLogImpl) { dest.sumLog = (SumOfLogs) dest.sumLogImpl; } else { SumOfLogs.copy(source.sumLog, dest.sumLog); } if (source.sumsq == source.sumsqImpl) { dest.sumsq = (SumOfSquares) dest.sumsqImpl; } else { SumOfSquares.copy(source.sumsq, dest.sumsq); } }
Example #24
Source File: OneWayAnovaImpl.java From astor with GNU General Public License v2.0 | 4 votes |
/** * This method actually does the calculations (except P-value). * * @param categoryData <code>Collection</code> of <code>double[]</code> * arrays each containing data for one category * @return computed AnovaStats * @throws IllegalArgumentException if categoryData does not meet * preconditions specified in the interface definition * @throws MathException if an error occurs computing the Anova stats */ private AnovaStats anovaStats(Collection<double[]> categoryData) throws IllegalArgumentException, MathException { // check if we have enough categories if (categoryData.size() < 2) { throw MathRuntimeException.createIllegalArgumentException( "two or more categories required, got {0}", categoryData.size()); } // check if each category has enough data and all is double[] for (double[] array : categoryData) { if (array.length <= 1) { throw MathRuntimeException.createIllegalArgumentException( "two or more values required in each category, one has {0}", array.length); } } int dfwg = 0; double sswg = 0; Sum totsum = new Sum(); SumOfSquares totsumsq = new SumOfSquares(); int totnum = 0; for (double[] data : categoryData) { Sum sum = new Sum(); SumOfSquares sumsq = new SumOfSquares(); int num = 0; for (int i = 0; i < data.length; i++) { double val = data[i]; // within category num++; sum.increment(val); sumsq.increment(val); // for all categories totnum++; totsum.increment(val); totsumsq.increment(val); } dfwg += num - 1; double ss = sumsq.getResult() - sum.getResult() * sum.getResult() / num; sswg += ss; } double sst = totsumsq.getResult() - totsum.getResult() * totsum.getResult()/totnum; double ssbg = sst - sswg; int dfbg = categoryData.size() - 1; double msbg = ssbg/dfbg; double mswg = sswg/dfwg; double F = msbg/mswg; return new AnovaStats(dfbg, dfwg, F); }
Example #25
Source File: SummaryStatistics.java From astor with GNU General Public License v2.0 | 4 votes |
/** * Copies source to dest. * <p>Neither source nor dest can be null.</p> * * @param source SummaryStatistics to copy * @param dest SummaryStatistics to copy to * @throws NullPointerException if either source or dest is null */ public static void copy(SummaryStatistics source, SummaryStatistics dest) { dest.maxImpl = source.maxImpl.copy(); dest.meanImpl = source.meanImpl.copy(); dest.minImpl = source.minImpl.copy(); dest.sumImpl = source.sumImpl.copy(); dest.varianceImpl = source.varianceImpl.copy(); dest.sumLogImpl = source.sumLogImpl.copy(); dest.sumsqImpl = source.sumsqImpl.copy(); if (source.getGeoMeanImpl() instanceof GeometricMean) { // Keep geoMeanImpl, sumLogImpl in synch dest.geoMeanImpl = new GeometricMean((SumOfLogs) dest.sumLogImpl); } else { dest.geoMeanImpl = source.geoMeanImpl.copy(); } SecondMoment.copy(source.secondMoment, dest.secondMoment); dest.n = source.n; // Make sure that if stat == statImpl in source, same // holds in dest; otherwise copy stat if (source.geoMean == source.geoMeanImpl) { dest.geoMean = (GeometricMean) dest.geoMeanImpl; } else { GeometricMean.copy(source.geoMean, dest.geoMean); } if (source.max == source.maxImpl) { dest.max = (Max) dest.maxImpl; } else { Max.copy(source.max, dest.max); } if (source.mean == source.meanImpl) { dest.mean = (Mean) dest.meanImpl; } else { Mean.copy(source.mean, dest.mean); } if (source.min == source.minImpl) { dest.min = (Min) dest.minImpl; } else { Min.copy(source.min, dest.min); } if (source.sum == source.sumImpl) { dest.sum = (Sum) dest.sumImpl; } else { Sum.copy(source.sum, dest.sum); } if (source.variance == source.varianceImpl) { dest.variance = (Variance) dest.varianceImpl; } else { Variance.copy(source.variance, dest.variance); } if (source.sumLog == source.sumLogImpl) { dest.sumLog = (SumOfLogs) dest.sumLogImpl; } else { SumOfLogs.copy(source.sumLog, dest.sumLog); } if (source.sumsq == source.sumsqImpl) { dest.sumsq = (SumOfSquares) dest.sumsqImpl; } else { SumOfSquares.copy(source.sumsq, dest.sumsq); } }
Example #26
Source File: OneWayAnovaImpl.java From astor with GNU General Public License v2.0 | 4 votes |
/** * This method actually does the calculations (except P-value). * * @param categoryData <code>Collection</code> of <code>double[]</code> * arrays each containing data for one category * @return computed AnovaStats * @throws IllegalArgumentException if categoryData does not meet * preconditions specified in the interface definition * @throws MathException if an error occurs computing the Anova stats */ private AnovaStats anovaStats(Collection<double[]> categoryData) throws IllegalArgumentException, MathException { // check if we have enough categories if (categoryData.size() < 2) { throw MathRuntimeException.createIllegalArgumentException( "two or more categories required, got {0}", categoryData.size()); } // check if each category has enough data and all is double[] for (double[] array : categoryData) { if (array.length <= 1) { throw MathRuntimeException.createIllegalArgumentException( "two or more values required in each category, one has {0}", array.length); } } int dfwg = 0; double sswg = 0; Sum totsum = new Sum(); SumOfSquares totsumsq = new SumOfSquares(); int totnum = 0; for (double[] data : categoryData) { Sum sum = new Sum(); SumOfSquares sumsq = new SumOfSquares(); int num = 0; for (int i = 0; i < data.length; i++) { double val = data[i]; // within category num++; sum.increment(val); sumsq.increment(val); // for all categories totnum++; totsum.increment(val); totsumsq.increment(val); } dfwg += num - 1; double ss = sumsq.getResult() - sum.getResult() * sum.getResult() / num; sswg += ss; } double sst = totsumsq.getResult() - totsum.getResult() * totsum.getResult()/totnum; double ssbg = sst - sswg; int dfbg = categoryData.size() - 1; double msbg = ssbg/dfbg; double mswg = sswg/dfwg; double F = msbg/mswg; return new AnovaStats(dfbg, dfwg, F); }
Example #27
Source File: OneWayAnovaImpl.java From astor with GNU General Public License v2.0 | 4 votes |
/** * This method actually does the calculations (except P-value). * * @param categoryData <code>Collection</code> of <code>double[]</code> * arrays each containing data for one category * @return computed AnovaStats * @throws IllegalArgumentException if categoryData does not meet * preconditions specified in the interface definition * @throws MathException if an error occurs computing the Anova stats */ private AnovaStats anovaStats(Collection<double[]> categoryData) throws IllegalArgumentException, MathException { // check if we have enough categories if (categoryData.size() < 2) { throw MathRuntimeException.createIllegalArgumentException( "two or more categories required, got {0}", categoryData.size()); } // check if each category has enough data and all is double[] for (double[] array : categoryData) { if (array.length <= 1) { throw MathRuntimeException.createIllegalArgumentException( "two or more values required in each category, one has {0}", array.length); } } int dfwg = 0; double sswg = 0; Sum totsum = new Sum(); SumOfSquares totsumsq = new SumOfSquares(); int totnum = 0; for (double[] data : categoryData) { Sum sum = new Sum(); SumOfSquares sumsq = new SumOfSquares(); int num = 0; for (int i = 0; i < data.length; i++) { double val = data[i]; // within category num++; sum.increment(val); sumsq.increment(val); // for all categories totnum++; totsum.increment(val); totsumsq.increment(val); } dfwg += num - 1; double ss = sumsq.getResult() - sum.getResult() * sum.getResult() / num; sswg += ss; } double sst = totsumsq.getResult() - totsum.getResult() * totsum.getResult()/totnum; double ssbg = sst - sswg; int dfbg = categoryData.size() - 1; double msbg = ssbg/dfbg; double mswg = sswg/dfwg; double F = msbg/mswg; return new AnovaStats(dfbg, dfwg, F); }
Example #28
Source File: SummaryStatistics.java From astor with GNU General Public License v2.0 | 4 votes |
/** * Copies source to dest. * <p>Neither source nor dest can be null.</p> * * @param source SummaryStatistics to copy * @param dest SummaryStatistics to copy to * @throws NullPointerException if either source or dest is null */ public static void copy(SummaryStatistics source, SummaryStatistics dest) { dest.maxImpl = source.maxImpl.copy(); dest.meanImpl = source.meanImpl.copy(); dest.minImpl = source.minImpl.copy(); dest.sumImpl = source.sumImpl.copy(); dest.varianceImpl = source.varianceImpl.copy(); dest.sumLogImpl = source.sumLogImpl.copy(); dest.sumsqImpl = source.sumsqImpl.copy(); if (source.getGeoMeanImpl() instanceof GeometricMean) { // Keep geoMeanImpl, sumLogImpl in synch dest.geoMeanImpl = new GeometricMean((SumOfLogs) dest.sumLogImpl); } else { dest.geoMeanImpl = source.geoMeanImpl.copy(); } SecondMoment.copy(source.secondMoment, dest.secondMoment); dest.n = source.n; // Make sure that if stat == statImpl in source, same // holds in dest; otherwise copy stat if (source.geoMean == source.geoMeanImpl) { dest.geoMean = (GeometricMean) dest.geoMeanImpl; } else { GeometricMean.copy(source.geoMean, dest.geoMean); } if (source.max == source.maxImpl) { dest.max = (Max) dest.maxImpl; } else { Max.copy(source.max, dest.max); } if (source.mean == source.meanImpl) { dest.mean = (Mean) dest.meanImpl; } else { Mean.copy(source.mean, dest.mean); } if (source.min == source.minImpl) { dest.min = (Min) dest.minImpl; } else { Min.copy(source.min, dest.min); } if (source.sum == source.sumImpl) { dest.sum = (Sum) dest.sumImpl; } else { Sum.copy(source.sum, dest.sum); } if (source.variance == source.varianceImpl) { dest.variance = (Variance) dest.varianceImpl; } else { Variance.copy(source.variance, dest.variance); } if (source.sumLog == source.sumLogImpl) { dest.sumLog = (SumOfLogs) dest.sumLogImpl; } else { SumOfLogs.copy(source.sumLog, dest.sumLog); } if (source.sumsq == source.sumsqImpl) { dest.sumsq = (SumOfSquares) dest.sumsqImpl; } else { SumOfSquares.copy(source.sumsq, dest.sumsq); } }
Example #29
Source File: Math_43_SummaryStatistics_t.java From coming with MIT License | 4 votes |
/** * Copies source to dest. * <p>Neither source nor dest can be null.</p> * * @param source SummaryStatistics to copy * @param dest SummaryStatistics to copy to * @throws NullArgumentException if either source or dest is null */ public static void copy(SummaryStatistics source, SummaryStatistics dest) throws NullArgumentException { MathUtils.checkNotNull(source); MathUtils.checkNotNull(dest); dest.maxImpl = source.maxImpl.copy(); dest.minImpl = source.minImpl.copy(); dest.sumImpl = source.sumImpl.copy(); dest.sumLogImpl = source.sumLogImpl.copy(); dest.sumsqImpl = source.sumsqImpl.copy(); dest.secondMoment = source.secondMoment.copy(); dest.n = source.n; // Keep commons-math supplied statistics with embedded moments in synch if (source.getVarianceImpl() instanceof Variance) { dest.varianceImpl = new Variance(dest.secondMoment); } else { dest.varianceImpl = source.varianceImpl.copy(); } if (source.meanImpl instanceof Mean) { dest.meanImpl = new Mean(dest.secondMoment); } else { dest.meanImpl = source.meanImpl.copy(); } if (source.getGeoMeanImpl() instanceof GeometricMean) { dest.geoMeanImpl = new GeometricMean((SumOfLogs) dest.sumLogImpl); } else { dest.geoMeanImpl = source.geoMeanImpl.copy(); } // Make sure that if stat == statImpl in source, same // holds in dest; otherwise copy stat if (source.geoMean == source.geoMeanImpl) { dest.geoMean = (GeometricMean) dest.geoMeanImpl; } else { GeometricMean.copy(source.geoMean, dest.geoMean); } if (source.max == source.maxImpl) { dest.max = (Max) dest.maxImpl; } else { Max.copy(source.max, dest.max); } if (source.mean == source.meanImpl) { dest.mean = (Mean) dest.meanImpl; } else { Mean.copy(source.mean, dest.mean); } if (source.min == source.minImpl) { dest.min = (Min) dest.minImpl; } else { Min.copy(source.min, dest.min); } if (source.sum == source.sumImpl) { dest.sum = (Sum) dest.sumImpl; } else { Sum.copy(source.sum, dest.sum); } if (source.variance == source.varianceImpl) { dest.variance = (Variance) dest.varianceImpl; } else { Variance.copy(source.variance, dest.variance); } if (source.sumLog == source.sumLogImpl) { dest.sumLog = (SumOfLogs) dest.sumLogImpl; } else { SumOfLogs.copy(source.sumLog, dest.sumLog); } if (source.sumsq == source.sumsqImpl) { dest.sumsq = (SumOfSquares) dest.sumsqImpl; } else { SumOfSquares.copy(source.sumsq, dest.sumsq); } }
Example #30
Source File: OneWayAnovaImpl.java From astor with GNU General Public License v2.0 | 4 votes |
/** * This method actually does the calculations (except P-value). * * @param categoryData <code>Collection</code> of <code>double[]</code> * arrays each containing data for one category * @return computed AnovaStats * @throws IllegalArgumentException if categoryData does not meet * preconditions specified in the interface definition * @throws MathException if an error occurs computing the Anova stats */ private AnovaStats anovaStats(Collection<double[]> categoryData) throws IllegalArgumentException, MathException { // check if we have enough categories if (categoryData.size() < 2) { throw MathRuntimeException.createIllegalArgumentException( "two or more categories required, got {0}", categoryData.size()); } // check if each category has enough data and all is double[] for (double[] array : categoryData) { if (array.length <= 1) { throw MathRuntimeException.createIllegalArgumentException( "two or more values required in each category, one has {0}", array.length); } } int dfwg = 0; double sswg = 0; Sum totsum = new Sum(); SumOfSquares totsumsq = new SumOfSquares(); int totnum = 0; for (double[] data : categoryData) { Sum sum = new Sum(); SumOfSquares sumsq = new SumOfSquares(); int num = 0; for (int i = 0; i < data.length; i++) { double val = data[i]; // within category num++; sum.increment(val); sumsq.increment(val); // for all categories totnum++; totsum.increment(val); totsumsq.increment(val); } dfwg += num - 1; double ss = sumsq.getResult() - sum.getResult() * sum.getResult() / num; sswg += ss; } double sst = totsumsq.getResult() - totsum.getResult() * totsum.getResult()/totnum; double ssbg = sst - sswg; int dfbg = categoryData.size() - 1; double msbg = ssbg/dfbg; double mswg = sswg/dfwg; double F = msbg/mswg; return new AnovaStats(dfbg, dfwg, F); }