net.imglib2.Sampler Java Examples

The following examples show how to use net.imglib2.Sampler. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example. You may check out the related API usage on the sidebar.

Example #1

Source File: ConsensusWarpFieldBuilder.java From render with GNU General Public License v2.0

6 votes

private int[] buildModelIndexGrid() {

        final int[] targetCellIndexes = new int[getNumberOfCells()];

        final ArrayImg<ARGBType, IntArray> target = ArrayImgs.argbs(targetCellIndexes, columnCount, rowCount);
        final KDTree<ARGBType> kdTree = new KDTree<>(consensusSetIndexSamples);
        final NearestNeighborSearch<ARGBType> nnSearchSamples = new NearestNeighborSearchOnKDTree<>(kdTree);

        final Cursor<ARGBType> targetCursor = target.localizingCursor();

        Sampler<ARGBType> sampler;
        ARGBType sampleItem;
        ARGBType targetItem;
        while (targetCursor.hasNext()) {

            targetCursor.fwd();
            nnSearchSamples.search(targetCursor);
            sampler = nnSearchSamples.getSampler();

            sampleItem = sampler.get();
            targetItem = targetCursor.get();
            targetItem.set(sampleItem);
        }

        return targetCellIndexes;
    }

Example #2

Source File: DerivedMatchGroup.java From render with GNU General Public License v2.0

6 votes

private List<Integer> getSetIndexesForPoints(final RealPointSampleList<ARGBType> largestSetIndexSamples,
                                             final List<RealPoint> otherSetPoints) {

    final List<Integer> setIndexList = new ArrayList<>();

    final KDTree<ARGBType> kdTree = new KDTree<>(largestSetIndexSamples);
    final NearestNeighborSearch<ARGBType> nnSearchSamples = new NearestNeighborSearchOnKDTree<>(kdTree);

    Sampler<ARGBType> sampler;
    ARGBType sampleItem;
    int nnSetIndex;
    for (final RealPoint otherPoint : otherSetPoints) {
        nnSearchSamples.search(otherPoint);
        sampler = nnSearchSamples.getSampler();

        sampleItem = sampler.get();
        nnSetIndex = sampleItem.get();
        setIndexList.add(nnSetIndex);
    }

    return setIndexList;
}

Example #3

Source File: GameOfLife3D.java From sciview with BSD 2-Clause "Simplified" License

4 votes

private boolean alive( final Sampler<UnsignedByteType> access ) {
    return access.get().get() == ALIVE;
}

Example #4

Source File: AveragedRandomAccessible.java From BigStitcher with GNU General Public License v2.0

4 votes

@Override
public Sampler< T > copy()
{
	return copyRandomAccess();
}

Example #5

Source File: BlendedExtendedMirroredRandomAccesible2.java From BigStitcher with GNU General Public License v2.0

4 votes

@Override
public Sampler<T> copy() {
	return copyRandomAccess();
}

Example #6

Source File: BlendingRealRandomAccess.java From BigStitcher with GNU General Public License v2.0

4 votes

@Override
public Sampler<FloatType> copy() { return copyRealRandomAccess(); }

Example #7

Source File: SlicesII.java From imagej-ops with BSD 2-Clause "Simplified" License

4 votes

@Override
public Sampler<RandomAccessibleInterval<T>> copy() {
	return copyCursor();
}

Example #8

Source File: ShuffledView.java From imagej-ops with BSD 2-Clause "Simplified" License

4 votes

@Override
public Sampler<T> copy() {
	throw new UnsupportedOperationException();
}

Example #9

Source File: BlendingRealRandomAccess.java From SPIM_Registration with GNU General Public License v2.0

4 votes

@Override
public Sampler<FloatType> copy() { return copyRealRandomAccess(); }