org.hl7.fhir.dstu3.model.Narrative Java Examples

@Operation(name = "$refresh-generated-content", type = Library.class)
public MethodOutcome refreshGeneratedContent(HttpServletRequest theRequest, RequestDetails theRequestDetails,
        @IdParam IdType theId) {
    Library theResource = this.libraryResourceProvider.getDao().read(theId);
    //this.formatCql(theResource);

    ModelManager modelManager = this.getModelManager();
    LibraryManager libraryManager = this.getLibraryManager(modelManager);

    CqlTranslator translator = this.dataRequirementsProvider.getTranslator(theResource, libraryManager, modelManager);
    if (translator.getErrors().size() > 0) {
        throw new RuntimeException("Errors during library compilation.");
    }
    
    this.dataRequirementsProvider.ensureElm(theResource, translator);
    this.dataRequirementsProvider.ensureRelatedArtifacts(theResource, translator, this);
    this.dataRequirementsProvider.ensureDataRequirements(theResource, translator);

    Narrative n = this.narrativeProvider.getNarrative(this.libraryResourceProvider.getContext(), theResource);
    theResource.setText(n);

    return this.libraryResourceProvider.update(theRequest, theResource, theId,
            theRequestDetails.getConditionalUrl(RestOperationTypeEnum.UPDATE), theRequestDetails);
}
 

private void buildNarrative(DomainResource resource, Element child) {
	if (!Utilities.noString(child.getTextContent())) {
		XhtmlNode div = new XhtmlNode(NodeType.Element, "div");
		String s = child.getTextContent().trim();
		if (Utilities.noString(s))
		  div.addText("No Narrative provided in the source CDA document");
		else
		  div.addText(s);
		resource.setText(new Narrative().setStatus(NarrativeStatus.ADDITIONAL).setDiv(div));
	}
}
 

protected String addReference(DomainResource r, String title, String id) throws Exception {
	if (r.getText() == null)
		r.setText(new Narrative());
	if (r.getText().getDiv() == null) {
		r.getText().setStatus(NarrativeStatus.GENERATED);
		new NarrativeGenerator("", "", context).generate(r);
	}
	r.setMeta(new Meta().setLastUpdatedElement(InstantType.now()));
	r.setId(id);
	feed.getEntry().add(new BundleEntryComponent().setResource(r));
	return id;
}
 

private void inject(DomainResource r, XhtmlNode x, NarrativeStatus status) {
  if (!x.hasAttribute("xmlns"))
    x.setAttribute("xmlns", "http://www.w3.org/1999/xhtml");
  if (!r.hasText() || !r.getText().hasDiv() || r.getText().getDiv().getChildNodes().isEmpty()) {
    r.setText(new Narrative());
    r.getText().setDiv(x);
    r.getText().setStatus(status);
  } else {
    XhtmlNode n = r.getText().getDiv();
    n.hr();
    n.getChildNodes().addAll(x.getChildNodes());
  }
}
 

@Operation(name = "$get-narrative", idempotent = true, type = Library.class)
public Parameters getNarrative(@IdParam IdType theId) {
    Library theResource = this.libraryResourceProvider.getDao().read(theId);
    Narrative n = this.narrativeProvider.getNarrative(this.libraryResourceProvider.getContext(), theResource);
    Parameters p = new Parameters();
    p.addParameter().setValue(new StringType(n.getDivAsString()));
    return p;
}
 

@Operation(name = "$get-narrative", idempotent = true, type = Measure.class)
public Parameters getNarrative(@IdParam IdType theId) {
    Measure theResource = this.measureResourceProvider.getDao().read(theId);
    CqfMeasure cqfMeasure = this.dataRequirementsProvider.createCqfMeasure(theResource, this.libraryResolutionProvider);
    Narrative n = this.narrativeProvider.getNarrative(this.measureResourceProvider.getContext(), cqfMeasure);
    Parameters p = new Parameters();
    p.addParameter().setValue(new StringType(n.getDivAsString()));
    return p;
}
 

public Optional<String> getText(DomainResource resource){
	Narrative narrative = ((DomainResource) resource).getText();
	if (narrative != null && narrative.getDivAsString() != null) {
		return ModelUtil.getNarrativeAsString(narrative);
	}
	return Optional.empty();
}
 

public Optional<String> getText(DomainResource domainResource){
	Narrative narrative = domainResource.getText();
	if (narrative != null && narrative.getDivAsString() != null) {
		return ModelUtil.getNarrativeAsString(narrative);
	}
	return Optional.empty();
}
 

public static Optional<String> getNarrativeAsString(Narrative narrative) {
	String text = narrative.getDivAsString();
	if (text != null) {
		String divDecodedText = text.replaceAll(
			"<div>|<div xmlns=\"http://www.w3.org/1999/xhtml\">|</div>|</ div>", "");
		divDecodedText = divDecodedText.replaceAll("<br/>|<br />", "\n")
			.replaceAll("&amp;", "&").replaceAll("&gt;", ">").replaceAll("&lt;", "<")
			.replaceAll("'&sect;'", "§");
		return Optional.of(divDecodedText);
	}
	return Optional.empty();
}
 

public static void setNarrativeFromString(Narrative narrative, String text){
	text = fixXhtmlContent(text);
	String divEncodedText =
		text.replaceAll("<", "&lt;").replaceAll(">", "&gt;").replaceAll("§", "'&sect;'")
			.replaceAll("&", "&amp;").replaceAll("(\r\n|\r|\n)", "<br />");
	narrative.setDivAsString(divEncodedText);
}
 

@Override
public Optional<String> getText(){
	Optional<IBaseResource> resource = loadResource();
	if (resource.isPresent() && resource.get() instanceof DomainResource) {
		Narrative narrative = ((DomainResource) resource.get()).getText();
		if (narrative != null && narrative.getDivAsString() != null) {
			return ModelUtil.getNarrativeAsString(narrative);
		}
	}
	return Optional.empty();
}
 

/**
 * Returns a FHIR Condition for testing purposes.
 *
 * @return a FHIR Condition for testing.
 */
public static Condition newCondition() {

  Condition condition = new Condition();

  // Condition based on example from FHIR:
  // https://www.hl7.org/fhir/condition-example.json.html
  condition.setId("Condition/example");

  condition.setLanguage("en_US");

  // Narrative text
  Narrative narrative = new Narrative();
  narrative.setStatusAsString("generated");
  narrative.setDivAsString("This data was generated for test purposes.");
  XhtmlNode node = new XhtmlNode();
  node.setNodeType(NodeType.Text);
  node.setValue("Severe burn of left ear (Date: 24-May 2012)");
  condition.setText(narrative);

  condition.setSubject(new Reference("Patient/12345").setDisplay("Here is a display for you."));

  condition.setVerificationStatus(Condition.ConditionVerificationStatus.CONFIRMED);

  // Condition code
  CodeableConcept code = new CodeableConcept();
  code.addCoding()
      .setSystem("http://snomed.info/sct")
      .setCode("39065001")
      .setDisplay("Severe");
  condition.setSeverity(code);

  // Severity code
  CodeableConcept severity = new CodeableConcept();
  severity.addCoding()
      .setSystem("http://snomed.info/sct")
      .setCode("24484000")
      .setDisplay("Burn of ear")
      .setUserSelected(true);
  condition.setSeverity(severity);

  // Onset date time
  DateTimeType onset = new DateTimeType();
  onset.setValueAsString("2012-05-24");
  condition.setOnset(onset);

  return condition;
}
 

/**
 * Returns a FHIR Condition for testing purposes.
 */
public static Condition newCondition() {

  Condition condition = new Condition();

  // Condition based on example from FHIR:
  // https://www.hl7.org/fhir/condition-example.json.html
  condition.setId("Condition/example");

  condition.setLanguage("en_US");

  // Narrative text
  Narrative narrative = new Narrative();
  narrative.setStatusAsString("generated");
  narrative.setDivAsString("This data was generated for test purposes.");
  XhtmlNode node = new XhtmlNode();
  node.setNodeType(NodeType.Text);
  node.setValue("Severe burn of left ear (Date: 24-May 2012)");
  condition.setText(narrative);

  condition.setSubject(new Reference("Patient/example").setDisplay("Here is a display for you."));

  condition.setVerificationStatus(Condition.ConditionVerificationStatus.CONFIRMED);

  // Condition code
  CodeableConcept code = new CodeableConcept();
  code.addCoding()
      .setSystem("http://snomed.info/sct")
      .setCode("39065001")
      .setDisplay("Severe");
  condition.setSeverity(code);

  // Severity code
  CodeableConcept severity = new CodeableConcept();
  severity.addCoding()
      .setSystem("http://snomed.info/sct")
      .setCode("24484000")
      .setDisplay("Burn of ear")
      .setUserSelected(true);
  condition.setSeverity(severity);

  // Onset date time
  DateTimeType onset = new DateTimeType();
  onset.setValueAsString("2012-05-24");
  condition.setOnset(onset);

  return condition;
}
 

public Narrative.NarrativeStatus getNarrativeStatus() {
    return narrativeStatus;
}
 

public void setNarrativeStatus(Narrative.NarrativeStatus narrativeStatus) {
    this.narrativeStatus = narrativeStatus;
}