ca.uhn.fhir.rest.server.exceptions.InternalErrorException Java Examples

private List<Base> opLessThen(List<Base> left, List<Base> right) throws FHIRException {
  if (left.size() == 1 && right.size() == 1 && left.get(0).isPrimitive() && right.get(0).isPrimitive()) {
    Base l = left.get(0);
    Base r = right.get(0);
    if (l.hasType("string") && r.hasType("string"))
      return makeBoolean(l.primitiveValue().compareTo(r.primitiveValue()) < 0);
    else if ((l.hasType("integer") || l.hasType("decimal")) && (r.hasType("integer") || r.hasType("decimal")))
      return makeBoolean(new Double(l.primitiveValue()) < new Double(r.primitiveValue()));
    else if ((l.hasType("date", "dateTime", "instant")) && (r.hasType("date", "dateTime", "instant")))
      return makeBoolean(l.primitiveValue().compareTo(r.primitiveValue()) < 0);
    else if ((l.hasType("time")) && (r.hasType("time")))
      return makeBoolean(l.primitiveValue().compareTo(r.primitiveValue()) < 0);
  } else if (left.size() == 1 && right.size() == 1 && left.get(0).fhirType().equals("Quantity") && right.get(0).fhirType().equals("Quantity") ) {
    List<Base> lUnit = left.get(0).listChildrenByName("unit");
    List<Base> rUnit = right.get(0).listChildrenByName("unit");
    if (Base.compareDeep(lUnit, rUnit, true)) {
      return opLessThen(left.get(0).listChildrenByName("value"), right.get(0).listChildrenByName("value"));
    } else {
		throw new InternalErrorException("Canonical Comparison isn't done yet");
    }
  }
  return new ArrayList<Base>();
}
 

private List<Base> opGreater(List<Base> left, List<Base> right) throws FHIRException {
  if (left.size() == 1 && right.size() == 1 && left.get(0).isPrimitive() && right.get(0).isPrimitive()) {
    Base l = left.get(0);
    Base r = right.get(0);
    if (l.hasType("string") && r.hasType("string"))
      return makeBoolean(l.primitiveValue().compareTo(r.primitiveValue()) > 0);
    else if ((l.hasType("integer", "decimal", "unsignedInt", "positiveInt")) && (r.hasType("integer", "decimal", "unsignedInt", "positiveInt")))
      return makeBoolean(new Double(l.primitiveValue()) > new Double(r.primitiveValue()));
    else if ((l.hasType("date", "dateTime", "instant")) && (r.hasType("date", "dateTime", "instant")))
      return makeBoolean(l.primitiveValue().compareTo(r.primitiveValue()) > 0);
    else if ((l.hasType("time")) && (r.hasType("time")))
      return makeBoolean(l.primitiveValue().compareTo(r.primitiveValue()) > 0);
  } else if (left.size() == 1 && right.size() == 1 && left.get(0).fhirType().equals("Quantity") && right.get(0).fhirType().equals("Quantity") ) {
    List<Base> lUnit = left.get(0).listChildrenByName("unit");
    List<Base> rUnit = right.get(0).listChildrenByName("unit");
    if (Base.compareDeep(lUnit, rUnit, true)) {
      return opGreater(left.get(0).listChildrenByName("value"), right.get(0).listChildrenByName("value"));
    } else {
		throw new InternalErrorException("Canonical Comparison isn't done yet");
    }
  }
  return new ArrayList<Base>();
}
 

private List<Base> opLessOrEqual(List<Base> left, List<Base> right) throws FHIRException {
  if (left.size() == 1 && right.size() == 1 && left.get(0).isPrimitive() && right.get(0).isPrimitive()) {
    Base l = left.get(0);
    Base r = right.get(0);
    if (l.hasType("string") && r.hasType("string"))
      return makeBoolean(l.primitiveValue().compareTo(r.primitiveValue()) <= 0);
    else if ((l.hasType("integer", "decimal", "unsignedInt", "positiveInt")) && (r.hasType("integer", "decimal", "unsignedInt", "positiveInt")))
      return makeBoolean(new Double(l.primitiveValue()) <= new Double(r.primitiveValue()));
    else if ((l.hasType("date", "dateTime", "instant")) && (r.hasType("date", "dateTime", "instant")))
      return makeBoolean(l.primitiveValue().compareTo(r.primitiveValue()) <= 0);
    else if ((l.hasType("time")) && (r.hasType("time")))
      return makeBoolean(l.primitiveValue().compareTo(r.primitiveValue()) <= 0);
  } else if (left.size() == 1 && right.size() == 1 && left.get(0).fhirType().equals("Quantity") && right.get(0).fhirType().equals("Quantity") ) {
    List<Base> lUnits = left.get(0).listChildrenByName("unit");
    String lunit = lUnits.size() == 1 ? lUnits.get(0).primitiveValue() : null;
    List<Base> rUnits = right.get(0).listChildrenByName("unit");
    String runit = rUnits.size() == 1 ? rUnits.get(0).primitiveValue() : null;
    if ((lunit == null && runit == null) || lunit.equals(runit)) {
      return opLessOrEqual(left.get(0).listChildrenByName("value"), right.get(0).listChildrenByName("value"));
    } else {
		throw new InternalErrorException("Canonical Comparison isn't done yet");
    }
  }
  return new ArrayList<Base>();
}
 

private List<Base> opGreaterOrEqual(List<Base> left, List<Base> right) throws FHIRException {
  if (left.size() == 1 && right.size() == 1 && left.get(0).isPrimitive() && right.get(0).isPrimitive()) {
    Base l = left.get(0);
    Base r = right.get(0);
    if (l.hasType("string") && r.hasType("string"))
      return makeBoolean(l.primitiveValue().compareTo(r.primitiveValue()) >= 0);
    else if ((l.hasType("integer", "decimal", "unsignedInt", "positiveInt")) && (r.hasType("integer", "decimal", "unsignedInt", "positiveInt")))
      return makeBoolean(new Double(l.primitiveValue()) >= new Double(r.primitiveValue()));
    else if ((l.hasType("date", "dateTime", "instant")) && (r.hasType("date", "dateTime", "instant")))
      return makeBoolean(l.primitiveValue().compareTo(r.primitiveValue()) >= 0);
    else if ((l.hasType("time")) && (r.hasType("time")))
      return makeBoolean(l.primitiveValue().compareTo(r.primitiveValue()) >= 0);
  } else if (left.size() == 1 && right.size() == 1 && left.get(0).fhirType().equals("Quantity") && right.get(0).fhirType().equals("Quantity") ) {
    List<Base> lUnit = left.get(0).listChildrenByName("unit");
    List<Base> rUnit = right.get(0).listChildrenByName("unit");
    if (Base.compareDeep(lUnit, rUnit, true)) {
      return opGreaterOrEqual(left.get(0).listChildrenByName("value"), right.get(0).listChildrenByName("value"));
    } else {
		throw new InternalErrorException("Canonical Comparison isn't done yet");
    }
  }
  return new ArrayList<Base>();
}
 

@Operation(name = "$apply", idempotent = true, type = ActivityDefinition.class)
public Resource apply(@IdParam IdType theId, @RequiredParam(name="patient") String patientId,
                      @OptionalParam(name="encounter") String encounterId,
                      @OptionalParam(name="practitioner") String practitionerId,
                      @OptionalParam(name="organization") String organizationId,
                      @OptionalParam(name="userType") String userType,
                      @OptionalParam(name="userLanguage") String userLanguage,
                      @OptionalParam(name="userTaskContext") String userTaskContext,
                      @OptionalParam(name="setting") String setting,
                      @OptionalParam(name="settingContext") String settingContext)
        throws InternalErrorException, FHIRException, ClassNotFoundException, IllegalAccessException,
        InstantiationException, ActivityDefinitionApplyException
{
    ActivityDefinition activityDefinition;
    try {
        activityDefinition = this.activityDefinitionDao.read(theId);
    } catch (Exception e) {
        return Helper.createErrorOutcome("Unable to resolve ActivityDefinition/" + theId.getValueAsString());
    }

    return resolveActivityDefinition(activityDefinition, patientId, practitionerId, organizationId);
}
 

@Operation(name = "$apply", idempotent = true, type = ActivityDefinition.class)
public Resource apply(@IdParam IdType theId, @RequiredParam(name = "patient") String patientId,
        @OptionalParam(name = "encounter") String encounterId,
        @OptionalParam(name = "practitioner") String practitionerId,
        @OptionalParam(name = "organization") String organizationId,
        @OptionalParam(name = "userType") String userType,
        @OptionalParam(name = "userLanguage") String userLanguage,
        @OptionalParam(name = "userTaskContext") String userTaskContext,
        @OptionalParam(name = "setting") String setting,
        @OptionalParam(name = "settingContext") String settingContext) throws InternalErrorException, FHIRException,
        ClassNotFoundException, IllegalAccessException, InstantiationException, ActivityDefinitionApplyException {
    ActivityDefinition activityDefinition;

    try {
        activityDefinition = this.activityDefinitionDao.read(theId);
    } catch (Exception e) {
        return Helper.createErrorOutcome("Unable to resolve ActivityDefinition/" + theId.getValueAsString());
    }

    return resolveActivityDefinition(activityDefinition, patientId, practitionerId, organizationId);
}
 

public static void createException(FhirContext ctx, IBaseResource resource) {
    if (resource instanceof OperationOutcome)
    {
        OperationOutcome operationOutcome = (OperationOutcome) resource;
        if (ctx != null) {
            String json = ctx.newJsonParser().encodeResourceToString(operationOutcome);
            log.info("Sever Returned: {}", json);
        }

        OperationOutcomeFactory.convertToException(operationOutcome);
    } else {
        throw new InternalErrorException("Server Error");
    }
}
 

@Operation(name = "$data-requirements", idempotent = true, type = Measure.class)
public org.hl7.fhir.dstu3.model.Library dataRequirements(@IdParam IdType theId,
        @RequiredParam(name = "startPeriod") String startPeriod,
        @RequiredParam(name = "endPeriod") String endPeriod) throws InternalErrorException, FHIRException {
    
    Measure measure = this.measureResourceProvider.getDao().read(theId);
    return this.dataRequirementsProvider.getDataRequirements(measure, this.libraryResolutionProvider);
}
 

@Operation(name = "$data-requirements", idempotent = true, type = Measure.class)
public org.hl7.fhir.r4.model.Library dataRequirements(@IdParam IdType theId,
        @RequiredParam(name = "startPeriod") String startPeriod,
        @RequiredParam(name = "endPeriod") String endPeriod) throws InternalErrorException, FHIRException {
    
    Measure measure = this.measureResourceProvider.getDao().read(theId);
    return this.dataRequirementsProvider.getDataRequirements(measure, this.libraryResolutionProvider);
}
 

private synchronized void initialize() {
if (myInitialized) {
	return;
}

List<String> propFileName = getPropertyFile();
try {
	NarrativeTemplateManifest manifest = forManifestFileLocation(propFileName);
	setManifest(manifest);
} catch (IOException e) {
	throw new InternalErrorException(e);
}

myInitialized = true;
  }
 

@Operation(name = "$evaluate-measure", idempotent = true, type = Measure.class)
public MeasureReport evaluateMeasure(@IdParam IdType theId, @RequiredParam(name = "periodStart") String periodStart,
        @RequiredParam(name = "periodEnd") String periodEnd, @OptionalParam(name = "measure") String measureRef,
        @OptionalParam(name = "reportType") String reportType, @OptionalParam(name = "patient") String patientRef,
        @OptionalParam(name = "productLine") String productLine,
        @OptionalParam(name = "practitioner") String practitionerRef,
        @OptionalParam(name = "lastReceivedOn") String lastReceivedOn,
        @OptionalParam(name = "source") String source, @OptionalParam(name = "user") String user,
        @OptionalParam(name = "pass") String pass) throws InternalErrorException, FHIRException {
    LibraryLoader libraryLoader = LibraryHelper.createLibraryLoader(this.libraryResolutionProvider);
    MeasureEvaluationSeed seed = new MeasureEvaluationSeed(this.factory, libraryLoader, this.libraryResolutionProvider);
    Measure measure = this.measureResourceProvider.getDao().read(theId);

    if (measure == null) {
        throw new RuntimeException("Could not find Measure/" + theId.getIdPart());
    }

    seed.setup(measure, periodStart, periodEnd, productLine, source, user, pass);

    // resolve report type
    MeasureEvaluation evaluator = new MeasureEvaluation(seed.getDataProvider(), this.registry, seed.getMeasurementPeriod());
    if (reportType != null) {
        switch (reportType) {
        case "patient":
            return evaluator.evaluatePatientMeasure(seed.getMeasure(), seed.getContext(), patientRef);
        case "patient-list": 
            return evaluator.evaluatePatientListMeasure(seed.getMeasure(), seed.getContext(), practitionerRef);
        case "population":
            return evaluator.evaluatePopulationMeasure(seed.getMeasure(), seed.getContext());
        default:
            throw new IllegalArgumentException("Invalid report type: " + reportType);
        }
    }

    // default report type is patient
    MeasureReport report = evaluator.evaluatePatientMeasure(seed.getMeasure(), seed.getContext(), patientRef);
    if (productLine != null)
    {
        Extension ext = new Extension();
        ext.setUrl("http://hl7.org/fhir/us/cqframework/cqfmeasures/StructureDefinition/cqfm-productLine");
        ext.setValue(new StringType(productLine));
        report.addExtension(ext);
    }

    return report;
}
 

@Operation(name = "$evaluate-measure", idempotent = true, type = Measure.class)
public MeasureReport evaluateMeasure(@IdParam IdType theId, @RequiredParam(name = "periodStart") String periodStart,
        @RequiredParam(name = "periodEnd") String periodEnd, @OptionalParam(name = "measure") String measureRef,
        @OptionalParam(name = "reportType") String reportType, @OptionalParam(name = "patient") String patientRef,
        @OptionalParam(name = "productLine") String productLine,
        @OptionalParam(name = "practitioner") String practitionerRef,
        @OptionalParam(name = "lastReceivedOn") String lastReceivedOn,
        @OptionalParam(name = "source") String source, @OptionalParam(name = "user") String user,
        @OptionalParam(name = "pass") String pass) throws InternalErrorException, FHIRException {
    LibraryLoader libraryLoader = LibraryHelper.createLibraryLoader(this.libraryResolutionProvider);
    MeasureEvaluationSeed seed = new MeasureEvaluationSeed(this.factory, libraryLoader, this.libraryResolutionProvider);
    Measure measure = this.measureResourceProvider.getDao().read(theId);

    if (measure == null) {
        throw new RuntimeException("Could not find Measure/" + theId.getIdPart());
    }

    seed.setup(measure, periodStart, periodEnd, productLine, source, user, pass);

    // resolve report type
    MeasureEvaluation evaluator = new MeasureEvaluation(seed.getDataProvider(), this.registry, seed.getMeasurementPeriod());
    if (reportType != null) {
        switch (reportType) {
        case "patient":
            return evaluator.evaluatePatientMeasure(seed.getMeasure(), seed.getContext(), patientRef);
        case "patient-list":
            return evaluator.evaluateSubjectListMeasure(seed.getMeasure(), seed.getContext(), practitionerRef);
        case "population":
            return  evaluator.evaluatePopulationMeasure(seed.getMeasure(), seed.getContext());
        default:
            throw new IllegalArgumentException("Invalid report type: " + reportType);
        }
    }

    // default report type is patient
    MeasureReport report = evaluator.evaluatePatientMeasure(seed.getMeasure(), seed.getContext(), patientRef);
    if (productLine != null)
    {
        Extension ext = new Extension();
        ext.setUrl("http://hl7.org/fhir/us/cqframework/cqfmeasures/StructureDefinition/cqfm-productLine");
        ext.setValue(new StringType(productLine));
        report.addExtension(ext);
    }

    return report;
}