com.hp.hpl.jena.query.QueryExecutionFactory Java Examples

public static void main(String[] args) {
	ModelD2RQ m = new ModelD2RQ("file:doc/example/mapping-iswc.ttl");
	String sparql = 
		"PREFIX dc: <http://purl.org/dc/elements/1.1/>" +
		"PREFIX foaf: <http://xmlns.com/foaf/0.1/>" +
		"SELECT ?paperTitle ?authorName WHERE {" +
		"    ?paper dc:title ?paperTitle . " +
		"    ?paper dc:creator ?author ." +
		"    ?author foaf:name ?authorName ." +
		"}";
	Query q = QueryFactory.create(sparql); 
	ResultSet rs = QueryExecutionFactory.create(q, m).execSelect();
	while (rs.hasNext()) {
		QuerySolution row = rs.nextSolution();
		System.out.println("Title: " + row.getLiteral("paperTitle").getString());
		System.out.println("Author: " + row.getLiteral("authorName").getString());
	}
	m.close();
}
 

/**
 * It executes a SELECT SPARQL query on the SPARQL endpoint, 
 * to get the number of resources specified in the query argument.
 *
 * @param query					the query to execute to get the number of resources.  
 * @param sparqlEndpointURI		the SPARQL endpoint URI.  
 * @param user					the user name for the SPARQl endpoint.
 * @param password				the password for the SPARQl endpoint.
 * @return the number of resources.
 * @since 2.0
 */
public int getNumResources(final String query, final String sparqlEndpointURI, final String user, final String password) {
	int numRes = 0;
	try {
        // Execute the query and obtain results
        final QueryExecution qexec = QueryExecutionFactory.sparqlService(
        		sparqlEndpointURI, 
        		QueryFactory.create(query), 
				auth(sparqlEndpointURI, user, password));
        qexec.setTimeout(2000, 5000);
           final ResultSet results = qexec.execSelect() ;
           while (results.hasNext())
           {
           	final QuerySolution soln = results.nextSolution() ;
           	numRes = soln.getLiteral("count").getInt();
           }
        qexec.close() ;
      } catch (Exception exception) {
		LOGGER.error(MessageCatalog._00035_SPARQL_FAILED, exception, query);
	}
	return numRes;
}
 

private static String extractEventPayloads(EventDeclaration ed, Dataset dataset) {
	String queryStr = queryPrefix + " select ?x ?y ?z where {<" + ed.getnodeId()
			+ "> ssn:observes ?x. ?x rdf:type ?y. ?x ssn:isPropertyOf ?z }";
	QueryExecution qe = QueryExecutionFactory.create(queryStr, dataset);
	ResultSet results = qe.execSelect();
	List<String> payloads = new ArrayList<String>();
	String foiId = "";
	while (results.hasNext()) {
		QuerySolution result = results.next();
		RDFNode propertyName = result.get("x");
		RDFNode propertyType = result.get("y");
		RDFNode foi = result.get("z");
		if (propertyType.toString().equals("http://www.w3.org/2000/01/rdf-schema#Resource"))
			continue;
		// System.out.println("type: " + property + " foi: " + foi);
		payloads.add(propertyType.toString() + "|" + foi.toString() + "|" + propertyName.toString());
		foiId = foi.toString();
		// System.out.println("payload: " + propertyType.toString() + "|" + foi.toString() + "|"
		// + propertyName.toString());
	}
	ed.setPayloads(payloads);
	return foiId;
}
 

public static EventPattern extractQueryFromDataset(String serviceRequest) {
	Model queryBase = FileManager.get().loadModel(datasetDirectory + serviceRequest);
	dataset.getDefaultModel().add(ModelFactory.createOntologyModel(ontoSpec, queryBase));

	String describeStr = queryPrefix + " select ?x  where{?x rdf:type ces:EventRequest}";
	// Query query = QueryFactory.create(describeStr);
	// query.setPrefixMapping(pmap);
	QueryExecution qe = QueryExecutionFactory.create(describeStr, dataset);
	ResultSet results = qe.execSelect();
	// ResultSetFormatter.out(System.out, results, query);
	Map<String, EventDeclaration> edMap = new HashMap<String, EventDeclaration>();
	EventPattern ep = new EventPattern();
	ep.setQuery(true);
	while (results.hasNext()) {
		// System.out.println("results!");
		QuerySolution row = results.next();
		RDFNode edID = row.get("x");
		// System.out.println("has id: " + edID.toString());
		ep = extractEDByServiceID(edID, dataset, edMap).getEp();
	}
	return ep;
}
 

public String testEndpoint(ConfigurationBean conf) {
	System.out.println("testing connection on " + conf.getEndPointUrl());
	QueryExecution qe = QueryExecutionFactory.sparqlService(conf.getEndPointUrl(), "select ?s {?s ?p ?o} LIMIT 1");
	String msg = "";
	try {
		ResultSet rs = qe.execSelect();
		if (rs.hasNext()) {
			System.out.println("is online");
			msg = "online";
		} else {
			System.out.println("is offline");
			msg = "offline";
		}
	} catch (Exception e) {
		System.out.println("is offline " + e.getMessage());
		msg = "offline " + e.getMessage();
	} finally {
		qe.close();
	}
	return msg;
}
 

private static void extractEventPattern(EventDeclaration ed, Dataset dataset, Map<String, EventDeclaration> edMap)
		throws CloneNotSupportedException {
	String desribeStr = queryPrefix + " describe  ?z where {<" + ed.getnodeId()
			+ "> owls:presents ?y. ?y ces:hasPattern ?z.}";
	QueryExecution qe1 = QueryExecutionFactory.create(desribeStr, dataset);
	Model patternModel = qe1.execDescribe();
	// RDFDataMgr.write(System.out, patternModel, Lang.TURTLE);
	EventPattern ep = new EventPattern();
	ep.setID("EP-" + ed.getnodeId());

	// ep.setFilters(new HashMap<String, List<Filter>>());
	String queryRoot = queryPrefix + " select  ?z where {<" + ed.getnodeId()
			+ "> owls:presents ?y. ?y ces:hasPattern ?z.}";
	QueryExecution qe2 = QueryExecutionFactory.create(queryRoot, dataset);
	ResultSet results = qe2.execSelect();
	if (results.hasNext()) {
		ed.setEp(ep);
		RDFNode root = results.next().get("z");
		traverseToExtract(0, root, patternModel, ep, dataset, edMap);
		extractSelectionMap(root, patternModel, ep, dataset, edMap);
		// System.out.println("EP extracted: " + ep.toString());
	}
	// traverse
	// RDFDataMgr.write(System.out, results, Lang.TURTLE);

}
 

public Model extractLocalData(Model result, String IRI, Model m, List<String> queries) throws Exception {

		// System.out.println("executing query on IRI");
		Resource subject = result.createResource(IRI);
		for (String query : queries) {
			QueryExecution qe = QueryExecutionFactory.create(parseQuery(query, IRI, null, -1, null), m);
			try {
				ResultSet rs = qe.execSelect();
				List<Statement> sl = new ArrayList<Statement>();
				while (rs.hasNext()) {
					QuerySolution qs = rs.next();
					RDFNode subject2 = qs.get("s");
					RDFNode property = qs.get("p");
					RDFNode object = qs.get("o");
					result.add(result.createStatement(subject2 != null ? subject2.asResource() : subject, property.as(Property.class), object));
				}
				result.add(sl);
			} catch (Exception e) {
				e.printStackTrace();
				throw new Exception("error in query execution: " + e.getMessage());
			} finally {
				qe.close();
			}
		}
		return result;
	}
 

private static String extractFoIById(Dataset dataset, String foiId) {
	String queryStr = queryPrefix + " select  ?a ?b ?c ?d where { <" + foiId + "> ct:hasStartLatitude ?a. <"
			+ foiId + "> ct:hasStartLongitude ?b. <" + foiId + "> ct:hasEndLatitude ?c. <" + foiId
			+ "> ct:hasEndLongitude ?d.}";
	QueryExecution qe = QueryExecutionFactory.create(queryStr, dataset);
	ResultSet results = qe.execSelect();
	if (results.hasNext()) {
		// RDFNode foi = results.next().get("y");
		QuerySolution qs = results.next();
		Double startLat = qs.getLiteral("a").getDouble();
		Double startLon = qs.getLiteral("b").getDouble();
		Double endLat = qs.getLiteral("c").getDouble();
		Double endLon = qs.getLiteral("d").getDouble();
		return startLat + "," + startLon + "-" + endLat + "," + endLon;
		// ed.setFoi(startLat + "," + startLon + "-" + endLat + "," + endLon);
		// }
	}
	return null;

}
 

private static Map<String, EventDeclaration> extractEDsFromDataset(Dataset dataset) {
	// List<EventDeclaration> eds = new ArrayList<EventDeclaration>();
	String describeStr = queryPrefix
			+ " select ?x"
			+ " where{?x rdf:type ?y graph <http://www.insight-centre.org/ces#> { ?y rdfs:subClassOf ces:EventService}}";
	// Query query = QueryFactory.create(describeStr);
	// query.setPrefixMapping(pmap);
	QueryExecution qe = QueryExecutionFactory.create(describeStr, dataset);
	ResultSet results = qe.execSelect();
	// ResultSetFormatter.out(System.out, results, query);
	Map<String, EventDeclaration> edMap = new HashMap<String, EventDeclaration>();
	while (results.hasNext()) {
		QuerySolution row = results.next();
		RDFNode edID = row.get("x");
		// System.out.println("has id: " + edID.toString());
		extractEDByServiceID(edID, dataset, edMap);
	}
	// RDFDataMgr.write(System.out, results, Lang.TURTLE);
	return edMap;
}
 

public static ArrayList<Statement> readTriplesFromKs(String subjectUri, String sparqlQuery){

        ArrayList<Statement> triples = new ArrayList<Statement>();
        HttpAuthenticator authenticator = new SimpleAuthenticator(user, pass.toCharArray());
        try {
            qCount++;
            QueryExecution x = QueryExecutionFactory.sparqlService(serviceEndpoint, sparqlQuery, authenticator);
            ResultSet resultset = x.execSelect();
            while (resultset.hasNext()) {
                QuerySolution solution = resultset.nextSolution();
                String relString = solution.get("predicate").toString();
                RDFNode obj = solution.get("object");
                Model model = ModelFactory.createDefaultModel();
                Resource subj = model.createResource(subjectUri);
                Statement s = createStatement(subj, ResourceFactory.createProperty(relString), obj);
                triples.add(s);
            }
        } catch (Exception e) {
            //e.printStackTrace();
        }
        return triples;
    }
 

public static ArrayList<String> readEventIdsFromKs(String sparqlQuery)throws Exception {
    ArrayList<String> eventIds = new ArrayList<String>();
    //System.out.println("serviceEndpoint = " + serviceEndpoint);
    //System.out.println("sparqlQuery = " + sparqlQuery);
    //System.out.println("user = " + user);
    //System.out.println("pass = " + pass);
    HttpAuthenticator authenticator = new SimpleAuthenticator(user, pass.toCharArray());

    QueryExecution x = QueryExecutionFactory.sparqlService(serviceEndpoint, sparqlQuery, authenticator);
    ResultSet resultset = x.execSelect();
    while (resultset.hasNext()) {
        QuerySolution solution = resultset.nextSolution();
        //System.out.println("solution.toString() = " + solution.toString());
        //( ?event = <http://www.newsreader-project.eu/data/Dasym-Pilot/425819_relink_dominant.naf#ev24> )
        String currentEvent = solution.get("event").toString();
        //System.out.println("currentEvent = " + currentEvent);
        //http://www.newsreader-project.eu/data/Dasym-Pilot/425819_relink_dominant.naf#ev24
        if (!eventIds.contains(currentEvent)) {
            eventIds.add(currentEvent);
        }
    }
    return eventIds;
}
 

/**
 * Executes a given SELECT query against a given dataset.
 * 
 * @param data the mistery guest containing test data (query and dataset)
 * @throws Exception never, otherwise the test fails.
 */
protected void selectTest(final MisteryGuest data) throws Exception {
	load(data);
	
	try {
		assertTrue(
				Arrays.toString(data.datasets) + ", " + data.query,
				ResultSetCompare.isomorphic(
						SOLRDF_CLIENT.select(queryString(data.query)),
						(inMemoryExecution = QueryExecutionFactory.create(
								QueryFactory.create(queryString(data.query)), 
								memoryDataset)).execSelect()));
	} catch (final Throwable error) {
		log.debug("JNS\n" + ResultSetFormatter.asText(SOLRDF_CLIENT.select(queryString(data.query))));
		
		QueryExecution debugExecution = null;
		log.debug("MEM\n" + ResultSetFormatter.asText(
				(debugExecution = (QueryExecutionFactory.create(
						QueryFactory.create(queryString(data.query)), 
						memoryDataset))).execSelect()));
		
		debugExecution.close();
		throw error;
	} 
}
 

public static EventPattern extractCompositionPlanFromDataset(String serviceRequest) {
	Model queryBase = FileManager.get().loadModel(datasetDirectory + serviceRequest);
	dataset.getDefaultModel().add(ModelFactory.createOntologyModel(ontoSpec, queryBase));

	String describeStr = queryPrefix + " select ?x  where{?x rdf:type ces:CompositionPlan}";
	// Query query = QueryFactory.create(describeStr);
	// query.setPrefixMapping(pmap);
	QueryExecution qe = QueryExecutionFactory.create(describeStr, dataset);
	ResultSet results = qe.execSelect();
	// ResultSetFormatter.out(System.out, results, query);
	Map<String, EventDeclaration> edMap = new HashMap<String, EventDeclaration>();
	EventPattern ep = new EventPattern();
	ep.setQuery(false);
	while (results.hasNext()) {
		// System.out.println("results!");
		QuerySolution row = results.next();
		RDFNode edID = row.get("x");
		// System.out.println("has id: " + edID.toString());
		ep = extractEDByServiceID(edID, dataset, edMap).getEp();
	}
	return ep;
}
 

@Override
public ClosableIterable<Statement> sparqlConstruct(String queryString)
        throws ModelRuntimeException {
	assertModel();
	Query query = QueryFactory.create(queryString);
	QueryExecution qexec = QueryExecutionFactory.create(query, this.jenaModel);
	
	if(query.isConstructType()) {
		com.hp.hpl.jena.rdf.model.Model m = qexec.execConstruct();
		Model resultModel = new ModelImplJena(null, m, Reasoning.none);
		resultModel.open();
		return resultModel;
	} else {
		throw new RuntimeException("Cannot handle this type of queries! Please use CONSTRUCT.");
	}
}
 

public static void main(String[] args) throws Exception {
	Dataset memoryDataset = DatasetFactory.createMem();
	Model memoryModel = ModelFactory.createDefaultModel();
	memoryModel.read(new FileReader("/work/workspaces/rdf/SolRDF/solrdf/src/test/resources/sample_data/one_triple_1.ttl"), "http://e.org", "TTL");
	memoryDataset.addNamedModel("http://grapha.com", memoryModel);
	
	memoryModel = ModelFactory.createDefaultModel();
	memoryModel.read(new FileReader("/work/workspaces/rdf/SolRDF/solrdf/src/test/resources/sample_data/one_triple_2.ttl"), "http://e.org", "TTL");
	memoryDataset.addNamedModel("http://graphb.com", memoryModel);
	
	memoryModel = ModelFactory.createDefaultModel();
	memoryModel.read(new FileReader("/work/workspaces/rdf/SolRDF/solrdf/src/test/resources/sample_data/one_triple_3.ttl"), "http://e.org", "TTL");
	memoryDataset.addNamedModel("http://graphc.com", memoryModel);
	
	memoryModel = ModelFactory.createDefaultModel();
	memoryModel.read(new FileReader("/work/workspaces/rdf/SolRDF/solrdf/src/test/resources/sample_data/one_triple_4.ttl"), "http://e.org", "TTL");
	memoryDataset.addNamedModel("http://graphd.com", memoryModel);
	
	final Query query = QueryFactory.create(q2());//"SELECT ?s FROM <http://grapha.com> WHERE { ?s <http://example.org/title> ?o }");
	
	System.out.println(ResultSetFormatter.asText(QueryExecutionFactory.create(query, memoryDataset).execSelect()));
}
 

/**
 * @return opened result Model
 */
@Override
public ClosableIterable<Statement> sparqlDescribe(String queryString)
        throws ModelRuntimeException {
	assertModel();
	Query query = QueryFactory.create(queryString);
	QueryExecution qexec = QueryExecutionFactory.create(query, this.jenaModel);
	
	if(query.isDescribeType()) {
		com.hp.hpl.jena.rdf.model.Model m = qexec.execDescribe();
		Model resultModel = new ModelImplJena(null, m, Reasoning.none);
		resultModel.open();
		return resultModel;
	} else {
		throw new RuntimeException("Cannot handle this type of queries! Please use DESCRIBE.");
	}
	
}
 

@Override
public ClosableIterable<Statement> queryConstruct(String query,
		String querylanguage) throws QueryLanguageNotSupportedException,
		MalformedQueryException, ModelRuntimeException {

	Query jenaQuery = QueryFactory.create(query);
	QueryExecution qexec = QueryExecutionFactory.create(jenaQuery,
			this.dataset);

	if (jenaQuery.isConstructType()) {
		com.hp.hpl.jena.rdf.model.Model m = qexec.execConstruct();
		Model resultModel = new ModelImplJena(null, m, Reasoning.none);
		resultModel.open();
		return resultModel;
	} else {
		throw new RuntimeException(
				"Cannot handle this type of query! Please use CONSTRUCT.");
	}
}
 

@Override
public ClosableIterable<Statement> sparqlConstruct(String query)
		throws ModelRuntimeException, MalformedQueryException {
	Query jenaQuery = QueryFactory.create(query);
	QueryExecution qexec = QueryExecutionFactory.create(jenaQuery,
			this.dataset);

	if (jenaQuery.isConstructType()) {
		com.hp.hpl.jena.rdf.model.Model m = qexec.execConstruct();
		Model resultModel = new ModelImplJena(null, m, Reasoning.none);
		resultModel.open();
		return resultModel;
	} else {
		throw new RuntimeException(
				"Cannot handle this type of query! Please use CONSTRUCT.");
	}

}
 

@Override
public ClosableIterable<Statement> sparqlDescribe(String query)
		throws ModelRuntimeException {
	Query jenaQuery = QueryFactory.create(query);
	QueryExecution qexec = QueryExecutionFactory.create(jenaQuery,
			this.dataset);

	if (jenaQuery.isDescribeType()) {
		com.hp.hpl.jena.rdf.model.Model m = qexec.execDescribe();
		Model resultModel = new ModelImplJena(null, m, Reasoning.none);
		resultModel.open();
		return resultModel;
	} else {
		throw new RuntimeException(
				"Cannot handle this type of query! Please use DESCRIBE.");
	}
}
 

public String crm2AliadaClass(final String crmClass) {
	final Query query = QueryFactory.create(CRM_TO_ALIADA_CLASS_P1 + crmClass + CRM_TO_ALIADA_CLASS_P2);
	ARQ.getContext().setTrue(ARQ.useSAX);
       
	QueryExecution execution = null;
	try {
		execution = QueryExecutionFactory.sparqlService("http://172.25.5.15:8890/sparql", query);
		execution.setTimeout(2000, 5000);
		final ResultSet results = execution.execSelect();
		//Iterating over the SPARQL Query results
		while (results.hasNext()) {
			QuerySolution soln = results.nextSolution();
			//Printing DBpedia entries' abstract.
			System.out.println(soln.get("?abstract"));   
			return soln.get("?abstract").asResource().getURI();
		}
		return "NULL";
       } finally {
       	try {
       		execution.close();
		} catch (Exception exception) {
			// TODO: handle exception
		}
       }

}
 

public static EventPattern extractQueryFromModel(Model serviceRequest) {
	// Model queryBase = FileManager.get().loadModel(datasetDirectory + serviceRequest);
	dataset.getDefaultModel().add(ModelFactory.createOntologyModel(ontoSpec, serviceRequest));

	String describeStr = queryPrefix + " select ?x  where{?x rdf:type ces:EventRequest}";
	// Query query = QueryFactory.create(describeStr);
	// query.setPrefixMapping(pmap);
	QueryExecution qe = QueryExecutionFactory.create(describeStr, dataset);
	ResultSet results = qe.execSelect();
	// ResultSetFormatter.out(System.out, results, query);
	Map<String, EventDeclaration> edMap = new HashMap<String, EventDeclaration>();
	EventPattern ep = new EventPattern();

	while (results.hasNext()) {
		// System.out.println("results!");
		QuerySolution row = results.next();
		RDFNode edID = row.get("x");
		// System.out.println("has id: " + edID.toString());
		ep = extractEDByServiceID(edID, dataset, edMap).getEp();
	}
	return ep;
}
 

private Object getSameResource(Model model, String typePrefix,
        Element item, Document dataDoc) throws XPathExpressionException {
    QueryExecution qExec = null;
    try {
        String query = getEqualsQuery(model, typePrefix, item, dataDoc);
        LogUtils.debug(this.getClass(), query);
        qExec = QueryExecutionFactory.create(query, model);
        ResultSet rs = qExec.execSelect();
        while (rs.hasNext()) {
            QuerySolution solution = rs.next();
            return solution.get("?x0");
        }
    } catch (Exception e) {
        if (debug) {
            e.printStackTrace();
        }
    } finally {
        if (qExec != null) {
            qExec.close();
        }
    }
    return null;
}
 

public static void getJob(GraphDatabaseService njgraph)
{
	NeoGraph graph = new NeoGraph(njgraph);
	Model njmodel = ModelFactory.createModelForGraph(graph);
	
	ST descJob = TemplateLoader.getQueriesGroup().getInstanceOf("getGraph");
	String queryASString = Constants.QUERY_PREFIX+ descJob.render();
	
	Query query = QueryFactory.create(queryASString, Syntax.syntaxSPARQL_11);
	QueryExecution qexec = QueryExecutionFactory.create(query, njmodel);
	ResultSet res = qexec.execSelect();
	
	int count=0;
       while(res.hasNext()){
       	//System.out.println("in while"+count);
       	QuerySolution sol = res.next();
       	System.out.println(sol.get("?Z"));
       	count++;
       }
      
      //log.info("Record fetched:"+ count);
      System.out.println("Record fetched:"+ count);
}
 

/**
 * It executes a SELECT SPARQL query on the SPARQL endpoint.
 *
 * @param sparqlEndpointURI		the SPARQL endpoint URI.  
 * @param user					the user name for the SPARQl endpoint.
 * @param password				the password for the SPARQl endpoint.
 * @param query					the query to use to look for the resources.
 * @return the {@link com.hp.hpl.jena.query.ResultSet} of the SELECT SPARQL query.
 * @since 2.0
 */
public ResultSet executeSelect(final String sparqlEndpointURI, final String user, final String password, final String query) {
	ResultSet results = null;
 	try {
        // Execute the query and obtain results
        final QueryExecution qexec = QueryExecutionFactory.sparqlService(
        		sparqlEndpointURI, 
        		QueryFactory.create(query), 
				auth(sparqlEndpointURI, user, password));
        qexec.setTimeout(2000, 5000);
           results = qexec.execSelect() ;
        qexec.close() ;
      } catch (Exception exception) {
		LOGGER.error(MessageCatalog._00035_SPARQL_FAILED, exception, query);
	}
 	return results;
}
 

/**
 * Executes a given ASK query against a given dataset.
 * 
 * @param data the mistery guest containing test data (query and dataset)
 * @throws Exception never, otherwise the test fails.
 */
protected void askTest(final MisteryGuest data) throws Exception {
	load(data);
	
	inMemoryExecution = QueryExecutionFactory.create(QueryFactory.create(queryString(data.query)), memoryDataset);
		
	assertEquals(
			Arrays.toString(data.datasets) + ", " + data.query,
			inMemoryExecution.execAsk(),
			SOLRDF_CLIENT.ask(queryString(data.query)));
}
 

/**
 * Executes a given CONSTRUCT query against a given dataset.
 * 
 * @param data the mistery guest containing test data (query and dataset)
 * @throws Exception never, otherwise the test fails.
 */
protected void constructTest(final MisteryGuest data) throws Exception {
	load(data);
	
	try {
		inMemoryExecution = QueryExecutionFactory.create(
				QueryFactory.create(queryString(data.query)), memoryDataset);
		
		assertTrue(
				Arrays.toString(data.datasets) + ", " + data.query,
				inMemoryExecution.execConstruct().isIsomorphicWith(
						SOLRDF_CLIENT.construct(queryString(data.query))));
	} catch (final Throwable error) {
		StringWriter writer = new StringWriter();
		RDFDataMgr.write(writer, SOLRDF_CLIENT.construct(queryString(data.query)), RDFFormat.NTRIPLES);
		log.debug("JNS\n" + writer);
		
		QueryExecution debugExecution = QueryExecutionFactory.create(
				QueryFactory.create(queryString(data.query)), memoryDataset);
		
		writer = new StringWriter();
		RDFDataMgr.write(writer, debugExecution.execConstruct(), RDFFormat.NTRIPLES);
		
		log.debug("MEM\n" + writer);
		
		debugExecution.close();
		throw error;
	} 
}
 

public static void search(GraphDatabaseService njgraph) {
	NeoGraph graph = new NeoGraph(njgraph);
	Model njmodel = ModelFactory.createModelForGraph(graph);
	
	//long start = System.currentTimeMillis();
	String s2 = "prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> \n" +
               	"PREFIX ub: <http://swat.cse.lehigh.edu/onto/univ-bench.owl#>" +
               "SELECT ?X ?name "+
               "WHERE" +
               "{ ?X ub:name ?name ." +
                "FILTER regex(?name,\"^Publication\") ."+
               "}"; 
      	          
       Query query = QueryFactory.create(s2);
       QueryExecution qExe = QueryExecutionFactory.create(query, njmodel);
       StopWatch watch = new StopWatch();
       ResultSet results = qExe.execSelect();
       log.info("Query took (ms): "+ watch.stop());
       System.out.println("Query took (ms): "+ watch.stop());
       //ResultSetFormatter.out(System.out, results);
       
       int count=0;
       while(results.hasNext()){
       	//System.out.println("in while"+count);
       	QuerySolution sol = results.next();
       	System.out.println(sol.get("name"));
       	count++;
       }
      
      log.info("Record fetched:"+ count);
      System.out.println("Record fetched:"+ count);
      
}
 

@GET
@Path("/dex")
@Produces({ WebUtil.MEDIA_TYPE_APPLICATION_NTRIPLE,
		WebUtil.MEDIA_TYPE_APPLICATION_RDFJSON,
		WebUtil.MEDIA_TYPE_APPLICATION_RDFXML, MediaType.TEXT_PLAIN,
		WebUtil.MEDIA_TYPE_TEXT_N3, WebUtil.MEDIA_TYPE_TEXT_TURTLE })
public Response dexSerialization(@QueryParam("id") String uuid,
		@Context Request request) {

	Variant variant = request.selectVariant(WebUtil.VARIANTS);
	MediaType mediaType = variant.getMediaType();

	Repository repository = RepositoryManager.getInstance().getRepository();
	OntModel ontModel = repository.getMDRDatabase().getOntModel();
	String queryString;

	File file = new File(
			"../web/src/main/resources/rest/dex-serialization-query.rq");
	try {
		queryString = FileUtils.readFileToString(file);
	} catch (IOException e) {
		logger.error("File with dex serialization query could not be found ");
		return Response.serverError().build();
	}

	ParameterizedSparqlString query = new ParameterizedSparqlString(
			queryString);
	query.setLiteral("uuid", ResourceFactory.createTypedLiteral(uuid));
	QueryExecution qe = QueryExecutionFactory.create(query.asQuery(),
			ontModel);
	Model resultModel = qe.execConstruct();

	graphStream.setModel(resultModel);
	graphStream.setLanguage(WebUtil.getSerializationLanguage(mediaType
			.toString()));

	return Response.ok(graphStream).build();
}
 

public Model extractData(Model result, String IRI, String sparql, List<String> queries) throws Exception {

		// System.out.println("executing query on " + sparql);
		Resource subject = result.createResource(IRI);
		for (String query : queries) {
			QueryExecution qe = QueryExecutionFactory.sparqlService(sparql, parseQuery(query, IRI, null, -1, null));
			try {
				ResultSet rs = qe.execSelect();

				List<Statement> sl = new ArrayList<Statement>();
				while (rs.hasNext()) {
					QuerySolution qs = rs.next();
					RDFNode subject2 = qs.get("s");
					RDFNode property = qs.get("p");
					RDFNode object = qs.get("o");
					result.add(result.createStatement(subject2 != null ? subject2.asResource() : subject, property.as(Property.class), object));
				}
				result.add(sl);
			} catch (Exception e) {
				e.printStackTrace();
				throw new Exception("error in query execution: " + e.getMessage());
			} finally {
				qe.close();
			}
		}
		return result;
	}
 

public static void search(GraphDatabaseService njgraph) {
	NeoGraph graph = new NeoGraph(njgraph);
	Model njmodel = ModelFactory.createModelForGraph(graph);
	      
	String s2 = "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>" +
				"PREFIX food: <http://www.w3.org/TR/2003/PR-owl-guide-20031209/food#>"+
				"PREFIX wine: <http://www.w3.org/TR/2003/PR-owl-guide-20031209/wine#>" +
				"PREFIX owl: <http://www.w3.org/2002/07/owl#>"+
				"SELECT ?X WHERE {"+
				"?X food:SweetFruit ?Z . }";

       Query query = QueryFactory.create(s2);
       QueryExecution qExe = QueryExecutionFactory.create(query, njmodel);
       StopWatch watch = new StopWatch();
       ResultSet results = qExe.execSelect();
       System.out.println("Query took (ms): "+ watch.stop());
       //ResultSetFormatter.out(System.out, results);
       
       int count=0;
       while(results.hasNext()){
       	//System.out.println("in while"+count);
       	QuerySolution sol = results.next();
       	System.out.print(sol.get("X"));
       	count++;
       }
      System.out.println("Record fetched:"+ count);
      
}