htsjdk.samtools.util.TestUtil Java Examples
The following examples show how to use
htsjdk.samtools.util.TestUtil.
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Example #1
Source File: DGEMatrixTest.java From Drop-seq with MIT License | 5 votes |
private File writeMatrixMarket(final DGEMatrix mat) throws IOException { final File tempDir = TestUtil.getTempDirectory("DGEMatrixTest.", ".tmp"); tempDir.deleteOnExit(); final File mmFile = File.createTempFile("DGEMatrixTest.", ".mm.gz", tempDir); mmFile.deleteOnExit(); mat.writeFile(mmFile, true, DGEMatrix.FileFormat.MM_SPARSE); return mmFile; }
Example #2
Source File: ReadCountCollectionUnitTest.java From gatk-protected with BSD 3-Clause "New" or "Revised" License | 5 votes |
@Test(dataProvider = "correctInstantiationData") public void testSerializeDeserialize(final ReadCountCollectionInfo info) { final ReadCountCollection newInstance = info.newInstance(); try { TestUtil.serializeAndDeserialize(newInstance); } catch (final IOException | ClassNotFoundException e) { Assert.fail("Exception thrown", e); } }