org.hl7.fhir.r4.model.Narrative.NarrativeStatus Java Examples

public String generate(ResourceContext rcontext, org.hl7.fhir.r4.elementmodel.Element er, boolean showCodeDetails, ITypeParser parser) throws IOException, FHIRException {
  if (rcontext == null)
    rcontext = new ResourceContext(null, er);
  this.parser = parser;
  
  XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
  x.para().b().tx("Generated Narrative"+(showCodeDetails ? " with Details" : ""));
  try {
    ResourceWrapperMetaElement resw = new ResourceWrapperMetaElement(er);
    BaseWrapperMetaElement base = new BaseWrapperMetaElement(er, null, er.getProperty().getStructure(), er.getProperty().getDefinition());
    base.children();
    generateByProfile(resw, er.getProperty().getStructure(), base, er.getProperty().getStructure().getSnapshot().getElement(), er.getProperty().getDefinition(), base.children, x, er.fhirType(), showCodeDetails, 0, rcontext);

  } catch (Exception e) {
    e.printStackTrace();
    x.para().b().setAttribute("style", "color: maroon").tx("Exception generating Narrative: "+e.getMessage());
  }
  inject(er, x,  NarrativeStatus.GENERATED);
  return new XhtmlComposer(XhtmlComposer.XML, pretty).compose(x);
}
 

public StructureMap generateMapFromMappings(StructureDefinition sd) throws IOException, FHIRException {
  String id = getLogicalMappingId(sd);
  if (id == null) 
      return null;
  String prefix = ToolingExtensions.readStringExtension(sd,  ToolingExtensions.EXT_MAPPING_PREFIX);
  String suffix = ToolingExtensions.readStringExtension(sd,  ToolingExtensions.EXT_MAPPING_SUFFIX);
  if (prefix == null || suffix == null)
    return null;
  // we build this by text. Any element that has a mapping, we put it's mappings inside it....
  StringBuilder b = new StringBuilder();
  b.append(prefix);

  ElementDefinition root = sd.getSnapshot().getElementFirstRep();
  String m = getMapping(root, id);
  if (m != null)
    b.append(m+"\r\n");
  addChildMappings(b, id, "", sd, root, false);
  b.append("\r\n");
  b.append(suffix);
  b.append("\r\n");
  StructureMap map = parse(b.toString(), sd.getUrl());
  map.setId(tail(map.getUrl()));
  if (!map.hasStatus())
    map.setStatus(PublicationStatus.DRAFT);
  map.getText().setStatus(NarrativeStatus.GENERATED);
  map.getText().setDiv(new XhtmlNode(NodeType.Element, "div"));
  map.getText().getDiv().addTag("pre").addText(render(map));
  return map;
}
 

private boolean generateByProfile(ResourceContext rc, StructureDefinition profile, boolean showCodeDetails) {
  XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
  x.para().b().tx("Generated Narrative"+(showCodeDetails ? " with Details" : ""));
  try {
    generateByProfile(rc.resourceResource, profile, rc.resourceResource, profile.getSnapshot().getElement(), profile.getSnapshot().getElement().get(0), getChildrenForPath(profile.getSnapshot().getElement(), rc.resourceResource.getResourceType().toString()), x, rc.resourceResource.getResourceType().toString(), showCodeDetails, rc);
  } catch (Exception e) {
    e.printStackTrace();
    x.para().b().setAttribute("style", "color: maroon").tx("Exception generating Narrative: "+e.getMessage());
  }
  inject(rc.resourceResource, x,  NarrativeStatus.GENERATED);
  return true;
}
 

private void inject(DomainResource r, XhtmlNode x, NarrativeStatus status) {
  if (!x.hasAttribute("xmlns"))
    x.setAttribute("xmlns", "http://www.w3.org/1999/xhtml");
  if (!r.hasText() || !r.getText().hasDiv() || r.getText().getDiv().getChildNodes().isEmpty()) {
    r.setText(new Narrative());
    r.getText().setDiv(x);
    r.getText().setStatus(status);
  } else {
    XhtmlNode n = r.getText().getDiv();
    n.hr();
    n.getChildNodes().addAll(x.getChildNodes());
  }
}
 

private void inject(org.hl7.fhir.r4.elementmodel.Element er, XhtmlNode x, NarrativeStatus status) throws IOException, FHIRException {
  if (!x.hasAttribute("xmlns"))
    x.setAttribute("xmlns", "http://www.w3.org/1999/xhtml");
  org.hl7.fhir.r4.elementmodel.Element txt = er.getNamedChild("text");
  if (txt == null) {
    txt = new org.hl7.fhir.r4.elementmodel.Element("text", er.getProperty().getChild(null, "text"));
    int i = 0;
    while (i < er.getChildren().size() && (er.getChildren().get(i).getName().equals("id") || er.getChildren().get(i).getName().equals("meta") || er.getChildren().get(i).getName().equals("implicitRules") || er.getChildren().get(i).getName().equals("language")))
      i++;
    if (i >= er.getChildren().size())
      er.getChildren().add(txt);
    else
      er.getChildren().add(i, txt);
  }
  org.hl7.fhir.r4.elementmodel.Element st = txt.getNamedChild("status");
  if (st == null) {
    st = new org.hl7.fhir.r4.elementmodel.Element("status", txt.getProperty().getChild(null, "status"));
    txt.getChildren().add(0, st);
  }
  st.setValue(status.toCode());
  org.hl7.fhir.r4.elementmodel.Element div = txt.getNamedChild("div");
  if (div == null) {
    div = new org.hl7.fhir.r4.elementmodel.Element("div", txt.getProperty().getChild(null, "div"));
    txt.getChildren().add(div);
    div.setValue(new XhtmlComposer(XhtmlComposer.XML, pretty).compose(x));
  }
  div.setXhtml(x);
}
 

public void generate(ResourceContext rcontext, ValueSet vs, ValueSet src, boolean header) throws FHIRException, IOException {
  List<UsedConceptMap> maps = findReleventMaps(vs);
  
  XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
  boolean hasExtensions;
  if (vs.hasExpansion()) {
    // for now, we just accept an expansion if there is one
    hasExtensions = generateExpansion(x, vs, src, header, maps);
  } else {
    hasExtensions = generateComposition(rcontext, x, vs, header, maps);
  }
  inject(vs, x, hasExtensions ? NarrativeStatus.EXTENSIONS :  NarrativeStatus.GENERATED);
}
 

public boolean generate(ResourceContext rcontext, StructureDefinition sd, Set<String> outputTracker) throws EOperationOutcome, FHIRException, IOException {
  ProfileUtilities pu = new ProfileUtilities(context, null, pkp);
  XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
  x.getChildNodes().add(pu.generateTable(definitionsTarget, sd, true, destDir, false, sd.getId(), false, corePath, "", false, false, outputTracker));
  inject(sd, x, NarrativeStatus.GENERATED);
  return true;
}
 

public boolean generate(ResourceContext rcontext, ImplementationGuide ig) throws EOperationOutcome, FHIRException, IOException {
  XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
  x.h2().addText(ig.getName());
  x.para().tx("The official URL for this implementation guide is: ");
  x.pre().tx(ig.getUrl());
  addMarkdown(x, ig.getDescription());
  inject(ig, x, NarrativeStatus.GENERATED);
  return true;
}
 

public boolean generate(ResourceContext rcontext, OperationDefinition opd) throws EOperationOutcome, FHIRException, IOException {
   XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
   x.h2().addText(opd.getName());
   x.para().addText(Utilities.capitalize(opd.getKind().toString())+": "+opd.getName());
   x.para().tx("The official URL for this operation definition is: ");
   x.pre().tx(opd.getUrl());
   addMarkdown(x, opd.getDescription());

   if (opd.getSystem())
     x.para().tx("URL: [base]/$"+opd.getCode());
   for (CodeType c : opd.getResource()) {
     if (opd.getType())
       x.para().tx("URL: [base]/"+c.getValue()+"/$"+opd.getCode());
     if (opd.getInstance())
       x.para().tx("URL: [base]/"+c.getValue()+"/[id]/$"+opd.getCode());
   }

   x.para().tx("Parameters");
   XhtmlNode tbl = x.table( "grid");
   XhtmlNode tr = tbl.tr();
   tr.td().b().tx("Use");
   tr.td().b().tx("Name");
   tr.td().b().tx("Cardinality");
   tr.td().b().tx("Type");
   tr.td().b().tx("Binding");
   tr.td().b().tx("Documentation");
   for (OperationDefinitionParameterComponent p : opd.getParameter()) {
     genOpParam(rcontext, tbl, "", p);
   }
   addMarkdown(x, opd.getComment());
   inject(opd, x, NarrativeStatus.GENERATED);
   return true;
}
 

public boolean generate(ResourceContext rcontext, CompartmentDefinition cpd) {
  StringBuilder in = new StringBuilder();
  StringBuilder out = new StringBuilder();
  for (CompartmentDefinitionResourceComponent cc: cpd.getResource()) {
    CommaSeparatedStringBuilder rules = new CommaSeparatedStringBuilder();
    if (!cc.hasParam()) {
      out.append(" <li><a href=\"").append(cc.getCode().toLowerCase()).append(".html\">").append(cc.getCode()).append("</a></li>\r\n");
    } else if (!rules.equals("{def}")) {
      for (StringType p : cc.getParam())
        rules.append(p.asStringValue());
      in.append(" <tr><td><a href=\"").append(cc.getCode().toLowerCase()).append(".html\">").append(cc.getCode()).append("</a></td><td>").append(rules.toString()).append("</td></tr>\r\n");
    }
  }
  XhtmlNode x;
  try {
    x = new XhtmlParser().parseFragment("<div><p>\r\nThe following resources may be in this compartment:\r\n</p>\r\n" +
        "<table class=\"grid\">\r\n"+
        " <tr><td><b>Resource</b></td><td><b>Inclusion Criteria</b></td></tr>\r\n"+
        in.toString()+
        "</table>\r\n"+
        "<p>\r\nA resource is in this compartment if the nominated search parameter (or chain) refers to the patient resource that defines the compartment.\r\n</p>\r\n" +
        "<p>\r\n\r\n</p>\r\n" +
        "<p>\r\nThe following resources are never in this compartment:\r\n</p>\r\n" +
        "<ul>\r\n"+
        out.toString()+
        "</ul></div>\r\n");
    inject(cpd, x, NarrativeStatus.GENERATED);
    return true;
  } catch (Exception e) {
    e.printStackTrace();
    return false;
  }
}
 

public static Narrative newNarrative(NarrativeStatus status, String html) throws IOException, FHIRException {
	Narrative n = new Narrative();
	n.setStatus(status);
	try {
		n.setDiv(new XhtmlParser().parseFragment("<div>"+Utilities.escapeXml(html)+"</div>"));
	} catch (org.hl7.fhir.exceptions.FHIRException e) {
		throw new FHIRException(e.getMessage(), e);
	}
	return n;
}
 

public boolean generate(ResourceContext rcontext, DomainResource r, Set<String> outputTracker) throws EOperationOutcome, FHIRException, IOException {
  if (rcontext == null)
    rcontext = new ResourceContext(null, r);
  
  if (templateProvider != null) {
    String liquidTemplate = templateProvider.findTemplate(rcontext, r);
    if (liquidTemplate != null) {
      return generateByLiquid(rcontext, r, liquidTemplate, outputTracker);
    }
  }
  if (r instanceof ConceptMap) {
    return generate(rcontext, (ConceptMap) r); // Maintainer = Grahame
  } else if (r instanceof ValueSet) {
    return generate(rcontext, (ValueSet) r, true); // Maintainer = Grahame
  } else if (r instanceof CodeSystem) {
    return generate(rcontext, (CodeSystem) r, true, null); // Maintainer = Grahame
  } else if (r instanceof OperationOutcome) {
    return generate(rcontext, (OperationOutcome) r); // Maintainer = Grahame
  } else if (r instanceof CapabilityStatement) {
    return generate(rcontext, (CapabilityStatement) r);   // Maintainer = Grahame
  } else if (r instanceof CompartmentDefinition) {
    return generate(rcontext, (CompartmentDefinition) r);   // Maintainer = Grahame
  } else if (r instanceof OperationDefinition) {
    return generate(rcontext, (OperationDefinition) r);   // Maintainer = Grahame
  } else if (r instanceof StructureDefinition) {
    return generate(rcontext, (StructureDefinition) r, outputTracker);   // Maintainer = Grahame
  } else if (r instanceof ImplementationGuide) {
    return generate(rcontext, (ImplementationGuide) r);   // Maintainer = Lloyd (until Grahame wants to take over . . . :))
  } else if (r instanceof DiagnosticReport) {
    inject(r, generateDiagnosticReport(new ResourceWrapperDirect(r)),  NarrativeStatus.GENERATED);   // Maintainer = Grahame
    return true;
  } else {
    StructureDefinition p = null;
    if (r.hasMeta())
      for (UriType pu : r.getMeta().getProfile())
        if (p == null)
          p = context.fetchResource(StructureDefinition.class, pu.getValue());
    if (p == null)
      p = context.fetchResource(StructureDefinition.class, r.getResourceType().toString());
    if (p == null)
      p = context.fetchTypeDefinition(r.getResourceType().toString().toLowerCase());
    if (p != null)
      return generateByProfile(rcontext, p, true);
    else
      return false;
  }
}
 

private void test() throws FHIRFormatError, IOException {

    Observation res = new Observation();
    res.setId("example");
    Narrative n = new Narrative();
    res.setText(n);
    n.setStatus(NarrativeStatus.GENERATED);
    n.setDiv(new XhtmlParser().parse("<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example</p><p><b>status</b>: final</p><p><b>category</b>: Vital Signs <span>(Details : {http://hl7.org/fhir/observation-category code &#39;vital-signs&#39; = &#39;Vital Signs&#39;, given as &#39;Vital Signs&#39;})</span></p><p><b>code</b>: Body Weight <span>(Details : {LOINC code &#39;29463-7&#39; = &#39;Body weight&#39;, given as &#39;Body Weight&#39;}; {LOINC code &#39;3141-9&#39; = &#39;Body weight Measured&#39;, given as &#39;Body weight Measured&#39;}; {SNOMED CT code &#39;27113001&#39; = &#39;Body weight&#39;, given as &#39;Body weight&#39;}; {http://acme.org/devices/clinical-codes code &#39;body-weight&#39; = &#39;body-weight&#39;, given as &#39;Body Weight&#39;})</span></p><p><b>subject</b>: <a>Patient/example</a></p><p><b>context</b>: <a>Encounter/example</a></p><p><b>effective</b>: 28/03/2016</p><p><b>value</b>: 185 lbs<span> (Details: UCUM code [lb_av] = &#39;lb_av&#39;)</span></p></div>", "div"));
    res.setStatus(ObservationStatus.FINAL);
    CodeableConcept cc = res.addCategory();
    Coding c = cc.addCoding();
    c.setSystem("http://hl7.org/fhir/observation-category");
    c.setCode("vital-signs");
    c.setDisplay("Vital Signs");
    cc = new CodeableConcept();
    res.setCode(cc);
    c = cc.addCoding();
    c.setSystem("http://loinc.org");
    c.setCode("29463-7");
    c.setDisplay("Body Weight");
    c = cc.addCoding();
    c.setSystem("http://loinc.org");
    c.setCode("3141-9");
    c.setDisplay("Body weight Measured");
    c = cc.addCoding();
    c.setSystem("http://snomed.info/sct");
    c.setCode("27113001");
    c.setDisplay("Body weight");
    c = cc.addCoding();
    c.setSystem("http://acme.org/devices/clinical-codes");
    c.setCode("body-weight");
    c.setDisplay("Body Weight");
    Reference r = new Reference();
    res.setSubject(r);
    r.setReference("Patient/example");
    r = new Reference();
    res.setEncounter(r);
    r.setReference("Encounter/example");
    res.setEffective(new DateTimeType("2016-03-28"));
    Quantity q = new Quantity();
    res.setValue(q);
    q.setValue(185);
    q.setUnit("lbs");
    q.setSystem("http://unitsofmeasure.org");
    q.setCode("[lb_av]");


  }
 

default void mapNarrative(Identifiable source, DomainResource target) {
	Narrative narrative = new Narrative();
	narrative.setStatus(NarrativeStatus.GENERATED);
	narrative.setDivAsString(source.getLabel());
	target.setText(narrative);
}
 

/**
 * This generate is optimised for the FHIR build process itself in as much as it
 * generates hyperlinks in the narrative that are only going to be correct for
 * the purposes of the build. This is to be reviewed in the future.
 *
 * @param vs
 * @param codeSystems
 * @throws IOException
 * @throws DefinitionException
 * @throws FHIRFormatError
 * @throws Exception
 */
public boolean generate(ResourceContext rcontext, CodeSystem cs, boolean header, String lang) throws FHIRFormatError, DefinitionException, IOException {
  XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
  boolean hasExtensions = false;
  hasExtensions = generateDefinition(x, cs, header, lang);
  inject(cs, x, hasExtensions ? NarrativeStatus.EXTENSIONS :  NarrativeStatus.GENERATED);
  return true;
}