Python networkx.jaccard_coefficient() Examples

def __init__(self, *hyper_dict, **kwargs):
        ''' Initialize the JaccardCoefficient class

        Args:
            d: dimension of the embedding
            beta: higher order coefficient
        '''
        hyper_params = {
            'method_name': 'jaccard_coefficient'
        }
        hyper_params.update(kwargs)
        for key in hyper_params.keys():
            self.__setattr__('_%s' % key, hyper_params[key])
        for dictionary in hyper_dict:
            for key in dictionary:
                self.__setattr__('_%s' % key, dictionary[key]) 

def get_edge_weight(self, i, j):
        aa_index = nx.jaccard_coefficient(self._G, [(i, j)])
        return six.next(aa_index)[2] 

def jaccard_coeff(self):
    """Computes Jaccard coefficients."""
    graph = nx.from_scipy_sparse_matrix(self.adj_matrix)
    coeffs = nx.jaccard_coefficient(graph)
    return coeffs 

def setUp(self):
        self.func = nx.jaccard_coefficient
        self.test = partial(_test_func, predict_func=self.func) 

def setUp(self):
        self.func = nx.jaccard_coefficient
        self.test = partial(_test_func, predict_func=self.func) 

def setUp(self):
        self.func = nx.jaccard_coefficient
        self.test = partial(_test_func, predict_func=self.func) 

def jaccard_coefficient(G, ebunch=None):
    r"""Compute the Jaccard coefficient of all node pairs in ebunch.

    Jaccard coefficient of nodes `u` and `v` is defined as

    .. math::

        \frac{|\Gamma(u) \cap \Gamma(v)|}{|\Gamma(u) \cup \Gamma(v)|}

    where :math:`\Gamma(u)` denotes the set of neighbors of `u`.

    Parameters
    ----------
    G : graph
        A NetworkX undirected graph.

    ebunch : iterable of node pairs, optional (default = None)
        Jaccard coefficient will be computed for each pair of nodes
        given in the iterable. The pairs must be given as 2-tuples
        (u, v) where u and v are nodes in the graph. If ebunch is None
        then all non-existent edges in the graph will be used.
        Default value: None.

    Returns
    -------
    piter : iterator
        An iterator of 3-tuples in the form (u, v, p) where (u, v) is a
        pair of nodes and p is their Jaccard coefficient.

    Examples
    --------
    >>> import networkx as nx
    >>> G = nx.complete_graph(5)
    >>> preds = nx.jaccard_coefficient(G, [(0, 1), (2, 3)])
    >>> for u, v, p in preds:
    ...     '(%d, %d) -> %.8f' % (u, v, p)
    ...
    '(0, 1) -> 0.60000000'
    '(2, 3) -> 0.60000000'

    References
    ----------
    .. [1] D. Liben-Nowell, J. Kleinberg.
           The Link Prediction Problem for Social Networks (2004).
           http://www.cs.cornell.edu/home/kleinber/link-pred.pdf
    """
    if ebunch is None:
        ebunch = nx.non_edges(G)

    def predict(u, v):
        cnbors = list(nx.common_neighbors(G, u, v))
        union_size = len(set(G[u]) | set(G[v]))
        if union_size == 0:
            return 0
        else:
            return len(cnbors) / union_size

    return ((u, v, predict(u, v)) for u, v in ebunch) 

def jaccard_coefficient(G, ebunch=None):
    r"""Compute the Jaccard coefficient of all node pairs in ebunch.

    Jaccard coefficient of nodes `u` and `v` is defined as

    .. math::

        \frac{|\Gamma(u) \cap \Gamma(v)|}{|\Gamma(u) \cup \Gamma(v)|}

    where $\Gamma(u)$ denotes the set of neighbors of $u$.

    Parameters
    ----------
    G : graph
        A NetworkX undirected graph.

    ebunch : iterable of node pairs, optional (default = None)
        Jaccard coefficient will be computed for each pair of nodes
        given in the iterable. The pairs must be given as 2-tuples
        (u, v) where u and v are nodes in the graph. If ebunch is None
        then all non-existent edges in the graph will be used.
        Default value: None.

    Returns
    -------
    piter : iterator
        An iterator of 3-tuples in the form (u, v, p) where (u, v) is a
        pair of nodes and p is their Jaccard coefficient.

    Examples
    --------
    >>> import networkx as nx
    >>> G = nx.complete_graph(5)
    >>> preds = nx.jaccard_coefficient(G, [(0, 1), (2, 3)])
    >>> for u, v, p in preds:
    ...     '(%d, %d) -> %.8f' % (u, v, p)
    ...
    '(0, 1) -> 0.60000000'
    '(2, 3) -> 0.60000000'

    References
    ----------
    .. [1] D. Liben-Nowell, J. Kleinberg.
           The Link Prediction Problem for Social Networks (2004).
           http://www.cs.cornell.edu/home/kleinber/link-pred.pdf
    """
    def predict(u, v):
        union_size = len(set(G[u]) | set(G[v]))
        if union_size == 0:
            return 0
        return len(list(nx.common_neighbors(G, u, v))) / union_size
    return _apply_prediction(G, predict, ebunch) 

def jaccard_coefficient(G, ebunch=None):
    r"""Compute the Jaccard coefficient of all node pairs in ebunch.

    Jaccard coefficient of nodes `u` and `v` is defined as

    .. math::

        \frac{|\Gamma(u) \cap \Gamma(v)|}{|\Gamma(u) \cup \Gamma(v)|}

    where $\Gamma(u)$ denotes the set of neighbors of $u$.

    Parameters
    ----------
    G : graph
        A NetworkX undirected graph.

    ebunch : iterable of node pairs, optional (default = None)
        Jaccard coefficient will be computed for each pair of nodes
        given in the iterable. The pairs must be given as 2-tuples
        (u, v) where u and v are nodes in the graph. If ebunch is None
        then all non-existent edges in the graph will be used.
        Default value: None.

    Returns
    -------
    piter : iterator
        An iterator of 3-tuples in the form (u, v, p) where (u, v) is a
        pair of nodes and p is their Jaccard coefficient.

    Examples
    --------
    >>> import networkx as nx
    >>> G = nx.complete_graph(5)
    >>> preds = nx.jaccard_coefficient(G, [(0, 1), (2, 3)])
    >>> for u, v, p in preds:
    ...     '(%d, %d) -> %.8f' % (u, v, p)
    ...
    '(0, 1) -> 0.60000000'
    '(2, 3) -> 0.60000000'

    References
    ----------
    .. [1] D. Liben-Nowell, J. Kleinberg.
           The Link Prediction Problem for Social Networks (2004).
           http://www.cs.cornell.edu/home/kleinber/link-pred.pdf
    """
    def predict(u, v):
        union_size = len(set(G[u]) | set(G[v]))
        if union_size == 0:
            return 0
        return len(list(nx.common_neighbors(G, u, v))) / union_size
    return _apply_prediction(G, predict, ebunch)