Python scipy.__version__() Examples

def _show_system_info(self):
        nose = import_nose()

        import numpy
        print("NumPy version %s" % numpy.__version__)
        relaxed_strides = numpy.ones((10, 1), order="C").flags.f_contiguous
        print("NumPy relaxed strides checking option:", relaxed_strides)
        npdir = os.path.dirname(numpy.__file__)
        print("NumPy is installed in %s" % npdir)

        if 'scipy' in self.package_name:
            import scipy
            print("SciPy version %s" % scipy.__version__)
            spdir = os.path.dirname(scipy.__file__)
            print("SciPy is installed in %s" % spdir)

        pyversion = sys.version.replace('\n', '')
        print("Python version %s" % pyversion)
        print("nose version %d.%d.%d" % nose.__versioninfo__) 

def test_rank_methods_series(self):
        pytest.importorskip('scipy.stats.special')
        rankdata = pytest.importorskip('scipy.stats.rankdata')
        import scipy

        xs = np.random.randn(9)
        xs = np.concatenate([xs[i:] for i in range(0, 9, 2)])  # add duplicates
        np.random.shuffle(xs)

        index = [chr(ord('a') + i) for i in range(len(xs))]

        for vals in [xs, xs + 1e6, xs * 1e-6]:
            ts = Series(vals, index=index)

            for m in ['average', 'min', 'max', 'first', 'dense']:
                result = ts.rank(method=m)
                sprank = rankdata(vals, m if m != 'first' else 'ordinal')
                expected = Series(sprank, index=index)

                if LooseVersion(scipy.__version__) >= '0.17.0':
                    expected = expected.astype('float64')
                tm.assert_series_equal(result, expected) 

def test_rank_methods_frame(self):
        pytest.importorskip('scipy.stats.special')
        rankdata = pytest.importorskip('scipy.stats.rankdata')
        import scipy

        xs = np.random.randint(0, 21, (100, 26))
        xs = (xs - 10.0) / 10.0
        cols = [chr(ord('z') - i) for i in range(xs.shape[1])]

        for vals in [xs, xs + 1e6, xs * 1e-6]:
            df = DataFrame(vals, columns=cols)

            for ax in [0, 1]:
                for m in ['average', 'min', 'max', 'first', 'dense']:
                    result = df.rank(axis=ax, method=m)
                    sprank = np.apply_along_axis(
                        rankdata, ax, vals,
                        m if m != 'first' else 'ordinal')
                    sprank = sprank.astype(np.float64)
                    expected = DataFrame(sprank, columns=cols)

                    if (LooseVersion(scipy.__version__) >=
                            LooseVersion('0.17.0')):
                        expected = expected.astype('float64')
                    tm.assert_frame_equal(result, expected) 

def _show_system_info(self):
        nose = import_nose()

        import numpy
        print("NumPy version %s" % numpy.__version__)
        relaxed_strides = numpy.ones((10, 1), order="C").flags.f_contiguous
        print("NumPy relaxed strides checking option:", relaxed_strides)
        npdir = os.path.dirname(numpy.__file__)
        print("NumPy is installed in %s" % npdir)

        if 'scipy' in self.package_name:
            import scipy
            print("SciPy version %s" % scipy.__version__)
            spdir = os.path.dirname(scipy.__file__)
            print("SciPy is installed in %s" % spdir)

        pyversion = sys.version.replace('\n', '')
        print("Python version %s" % pyversion)
        print("nose version %d.%d.%d" % nose.__versioninfo__) 

def status(self, status, **kwargs):
        if self.server:
            try:
                conn = HTTPConnection(self.server, self.port)
                conn.request('GET', '/version/')
                resp = conn.getresponse()

                if not resp.read().startswith('Experiment'):
                    raise RuntimeError()

                HTTPConnection(self.server, self.port).request('POST', '', str(dict({
                    'id': self.id,
                    'version': __version__,
                    'status': status,
                    'hostname': self.hostname,
                    'cwd': self.cwd,
                    'script_path': self.script_path,
                    'script': self.script,
                    'comment': self.comment,
                    'time': self.time,
                }, **kwargs)))
            except:
                warn('Unable to connect to \'{0}:{1}\'.'.format(self.server, self.port)) 

def _show_system_info(self):
        nose = import_nose()

        import numpy
        print("NumPy version %s" % numpy.__version__)
        relaxed_strides = numpy.ones((10, 1), order="C").flags.f_contiguous
        print("NumPy relaxed strides checking option:", relaxed_strides)
        npdir = os.path.dirname(numpy.__file__)
        print("NumPy is installed in %s" % npdir)

        if 'scipy' in self.package_name:
            import scipy
            print("SciPy version %s" % scipy.__version__)
            spdir = os.path.dirname(scipy.__file__)
            print("SciPy is installed in %s" % spdir)

        pyversion = sys.version.replace('\n', '')
        print("Python version %s" % pyversion)
        print("nose version %d.%d.%d" % nose.__versioninfo__) 

def test_rank_methods_frame(self):
        pytest.importorskip('scipy.stats.special')
        rankdata = pytest.importorskip('scipy.stats.rankdata')
        import scipy

        xs = np.random.randint(0, 21, (100, 26))
        xs = (xs - 10.0) / 10.0
        cols = [chr(ord('z') - i) for i in range(xs.shape[1])]

        for vals in [xs, xs + 1e6, xs * 1e-6]:
            df = DataFrame(vals, columns=cols)

            for ax in [0, 1]:
                for m in ['average', 'min', 'max', 'first', 'dense']:
                    result = df.rank(axis=ax, method=m)
                    sprank = np.apply_along_axis(
                        rankdata, ax, vals,
                        m if m != 'first' else 'ordinal')
                    sprank = sprank.astype(np.float64)
                    expected = DataFrame(sprank, columns=cols)

                    if (LooseVersion(scipy.__version__) >=
                            LooseVersion('0.17.0')):
                        expected = expected.astype('float64')
                    tm.assert_frame_equal(result, expected) 

def test_rank_methods_series(self):
        pytest.importorskip('scipy.stats.special')
        rankdata = pytest.importorskip('scipy.stats.rankdata')
        import scipy

        xs = np.random.randn(9)
        xs = np.concatenate([xs[i:] for i in range(0, 9, 2)])  # add duplicates
        np.random.shuffle(xs)

        index = [chr(ord('a') + i) for i in range(len(xs))]

        for vals in [xs, xs + 1e6, xs * 1e-6]:
            ts = Series(vals, index=index)

            for m in ['average', 'min', 'max', 'first', 'dense']:
                result = ts.rank(method=m)
                sprank = rankdata(vals, m if m != 'first' else 'ordinal')
                expected = Series(sprank, index=index)

                if LooseVersion(scipy.__version__) >= LooseVersion('0.17.0'):
                    expected = expected.astype('float64')
                tm.assert_series_equal(result, expected) 

def _show_system_info(self):
        nose = import_nose()

        import numpy
        print("NumPy version %s" % numpy.__version__)
        relaxed_strides = numpy.ones((10, 1), order="C").flags.f_contiguous
        print("NumPy relaxed strides checking option:", relaxed_strides)
        npdir = os.path.dirname(numpy.__file__)
        print("NumPy is installed in %s" % npdir)

        if 'scipy' in self.package_name:
            import scipy
            print("SciPy version %s" % scipy.__version__)
            spdir = os.path.dirname(scipy.__file__)
            print("SciPy is installed in %s" % spdir)

        pyversion = sys.version.replace('\n', '')
        print("Python version %s" % pyversion)
        print("nose version %d.%d.%d" % nose.__versioninfo__) 

def _show_system_info(self):
        nose = import_nose()

        import numpy
        print("NumPy version %s" % numpy.__version__)
        relaxed_strides = numpy.ones((10, 1), order="C").flags.f_contiguous
        print("NumPy relaxed strides checking option:", relaxed_strides)
        npdir = os.path.dirname(numpy.__file__)
        print("NumPy is installed in %s" % npdir)

        if 'scipy' in self.package_name:
            import scipy
            print("SciPy version %s" % scipy.__version__)
            spdir = os.path.dirname(scipy.__file__)
            print("SciPy is installed in %s" % spdir)

        pyversion = sys.version.replace('\n', '')
        print("Python version %s" % pyversion)
        print("nose version %d.%d.%d" % nose.__versioninfo__) 

def _plot(cls, ax, y, style=None, bw_method=None, ind=None,
              column_num=None, stacking_id=None, **kwds):
        from scipy.stats import gaussian_kde
        from scipy import __version__ as spv

        y = remove_na_arraylike(y)

        if LooseVersion(spv) >= '0.11.0':
            gkde = gaussian_kde(y, bw_method=bw_method)
        else:
            gkde = gaussian_kde(y)
            if bw_method is not None:
                msg = ('bw_method was added in Scipy 0.11.0.' +
                       ' Scipy version in use is {spv}.'.format(spv=spv))
                warnings.warn(msg)

        y = gkde.evaluate(ind)
        lines = MPLPlot._plot(ax, ind, y, style=style, **kwds)
        return lines 

def _plot(cls, ax, y, style=None, bw_method=None, ind=None,
              column_num=None, stacking_id=None, **kwds):
        from scipy.stats import gaussian_kde
        from scipy import __version__ as spv

        y = remove_na_arraylike(y)

        if LooseVersion(spv) >= '0.11.0':
            gkde = gaussian_kde(y, bw_method=bw_method)
        else:
            gkde = gaussian_kde(y)
            if bw_method is not None:
                msg = ('bw_method was added in Scipy 0.11.0.' +
                       ' Scipy version in use is {spv}.'.format(spv=spv))
                warnings.warn(msg)

        y = gkde.evaluate(ind)
        lines = MPLPlot._plot(ax, ind, y, style=style, **kwds)
        return lines 

def find_class(self, module, name):
        """
        Helps Unpickler to find certain Numpy modules.
        """

        try:
            numpy_version = StrictVersion(numpy.__version__)

            if numpy_version >= StrictVersion('1.5.0'):
                if module == 'numpy.core.defmatrix':
                    module = 'numpy.matrixlib.defmatrix'

        except ValueError:
            pass

        return Unpickler.find_class(self, module, name) 

def _show_system_info(self):
        nose = import_nose()

        import numpy
        print("NumPy version %s" % numpy.__version__)
        relaxed_strides = numpy.ones((10, 1), order="C").flags.f_contiguous
        print("NumPy relaxed strides checking option:", relaxed_strides)
        npdir = os.path.dirname(numpy.__file__)
        print("NumPy is installed in %s" % npdir)

        if 'scipy' in self.package_name:
            import scipy
            print("SciPy version %s" % scipy.__version__)
            spdir = os.path.dirname(scipy.__file__)
            print("SciPy is installed in %s" % spdir)

        pyversion = sys.version.replace('\n', '')
        print("Python version %s" % pyversion)
        print("nose version %d.%d.%d" % nose.__versioninfo__) 

def _show_system_info(self):
        nose = import_nose()

        import numpy
        print("NumPy version %s" % numpy.__version__)
        relaxed_strides = numpy.ones((10, 1), order="C").flags.f_contiguous
        print("NumPy relaxed strides checking option:", relaxed_strides)
        npdir = os.path.dirname(numpy.__file__)
        print("NumPy is installed in %s" % npdir)

        if 'scipy' in self.package_name:
            import scipy
            print("SciPy version %s" % scipy.__version__)
            spdir = os.path.dirname(scipy.__file__)
            print("SciPy is installed in %s" % spdir)

        pyversion = sys.version.replace('\n', '')
        print("Python version %s" % pyversion)
        print("nose version %d.%d.%d" % nose.__versioninfo__) 

def test_rank_methods_series(self):
        pytest.importorskip('scipy.stats.special')
        rankdata = pytest.importorskip('scipy.stats.rankdata')
        import scipy

        xs = np.random.randn(9)
        xs = np.concatenate([xs[i:] for i in range(0, 9, 2)])  # add duplicates
        np.random.shuffle(xs)

        index = [chr(ord('a') + i) for i in range(len(xs))]

        for vals in [xs, xs + 1e6, xs * 1e-6]:
            ts = Series(vals, index=index)

            for m in ['average', 'min', 'max', 'first', 'dense']:
                result = ts.rank(method=m)
                sprank = rankdata(vals, m if m != 'first' else 'ordinal')
                expected = Series(sprank, index=index)

                if LooseVersion(scipy.__version__) >= LooseVersion('0.17.0'):
                    expected = expected.astype('float64')
                tm.assert_series_equal(result, expected) 

def _plot(cls, ax, y, style=None, bw_method=None, ind=None,
              column_num=None, stacking_id=None, **kwds):
        from scipy.stats import gaussian_kde
        from scipy import __version__ as spv

        y = remove_na_arraylike(y)

        if LooseVersion(spv) >= '0.11.0':
            gkde = gaussian_kde(y, bw_method=bw_method)
        else:
            gkde = gaussian_kde(y)
            if bw_method is not None:
                msg = ('bw_method was added in Scipy 0.11.0.' +
                       ' Scipy version in use is {spv}.'.format(spv=spv))
                warnings.warn(msg)

        y = gkde.evaluate(ind)
        lines = MPLPlot._plot(ax, ind, y, style=style, **kwds)
        return lines 

def _show_system_info(self):
        nose = import_nose()

        import numpy
        print("NumPy version %s" % numpy.__version__)
        relaxed_strides = numpy.ones((10, 1), order="C").flags.f_contiguous
        print("NumPy relaxed strides checking option:", relaxed_strides)
        npdir = os.path.dirname(numpy.__file__)
        print("NumPy is installed in %s" % npdir)

        if 'scipy' in self.package_name:
            import scipy
            print("SciPy version %s" % scipy.__version__)
            spdir = os.path.dirname(scipy.__file__)
            print("SciPy is installed in %s" % spdir)

        pyversion = sys.version.replace('\n', '')
        print("Python version %s" % pyversion)
        print("nose version %d.%d.%d" % nose.__versioninfo__) 

def test_rank_methods_series(self):
        pytest.importorskip('scipy.stats.special')
        rankdata = pytest.importorskip('scipy.stats.rankdata')
        import scipy

        xs = np.random.randn(9)
        xs = np.concatenate([xs[i:] for i in range(0, 9, 2)])  # add duplicates
        np.random.shuffle(xs)

        index = [chr(ord('a') + i) for i in range(len(xs))]

        for vals in [xs, xs + 1e6, xs * 1e-6]:
            ts = Series(vals, index=index)

            for m in ['average', 'min', 'max', 'first', 'dense']:
                result = ts.rank(method=m)
                sprank = rankdata(vals, m if m != 'first' else 'ordinal')
                expected = Series(sprank, index=index)

                if LooseVersion(scipy.__version__) >= LooseVersion('0.17.0'):
                    expected = expected.astype('float64')
                tm.assert_series_equal(result, expected) 

def test_rank_methods_frame(self):
        pytest.importorskip('scipy.stats.special')
        rankdata = pytest.importorskip('scipy.stats.rankdata')
        import scipy

        xs = np.random.randint(0, 21, (100, 26))
        xs = (xs - 10.0) / 10.0
        cols = [chr(ord('z') - i) for i in range(xs.shape[1])]

        for vals in [xs, xs + 1e6, xs * 1e-6]:
            df = DataFrame(vals, columns=cols)

            for ax in [0, 1]:
                for m in ['average', 'min', 'max', 'first', 'dense']:
                    result = df.rank(axis=ax, method=m)
                    sprank = np.apply_along_axis(
                        rankdata, ax, vals,
                        m if m != 'first' else 'ordinal')
                    sprank = sprank.astype(np.float64)
                    expected = DataFrame(sprank, columns=cols)

                    if (LooseVersion(scipy.__version__) >=
                            LooseVersion('0.17.0')):
                        expected = expected.astype('float64')
                    tm.assert_frame_equal(result, expected) 

def _plot(cls, ax, y, style=None, bw_method=None, ind=None,
              column_num=None, stacking_id=None, **kwds):
        from scipy.stats import gaussian_kde
        from scipy import __version__ as spv

        y = remove_na_arraylike(y)

        if LooseVersion(spv) >= '0.11.0':
            gkde = gaussian_kde(y, bw_method=bw_method)
        else:
            gkde = gaussian_kde(y)
            if bw_method is not None:
                msg = ('bw_method was added in Scipy 0.11.0.' +
                       ' Scipy version in use is %s.' % spv)
                warnings.warn(msg)

        y = gkde.evaluate(ind)
        lines = MPLPlot._plot(ax, ind, y, style=style, **kwds)
        return lines 

def _plot(cls, ax, y, style=None, bw_method=None, ind=None,
              column_num=None, stacking_id=None, **kwds):
        from scipy.stats import gaussian_kde
        from scipy import __version__ as spv

        y = remove_na_arraylike(y)

        if LooseVersion(spv) >= '0.11.0':
            gkde = gaussian_kde(y, bw_method=bw_method)
        else:
            gkde = gaussian_kde(y)
            if bw_method is not None:
                msg = ('bw_method was added in Scipy 0.11.0.' +
                       ' Scipy version in use is {spv}.'.format(spv=spv))
                warnings.warn(msg)

        y = gkde.evaluate(ind)
        lines = MPLPlot._plot(ax, ind, y, style=style, **kwds)
        return lines 

def _show_system_info(self):
        nose = import_nose()

        import numpy
        print("NumPy version %s" % numpy.__version__)
        npdir = os.path.dirname(numpy.__file__)
        print("NumPy is installed in %s" % npdir)

        if 'scipy' in self.package_name:
            import scipy
            print("SciPy version %s" % scipy.__version__)
            spdir = os.path.dirname(scipy.__file__)
            print("SciPy is installed in %s" % spdir)

        pyversion = sys.version.replace('\n', '')
        print("Python version %s" % pyversion)
        print("nose version %d.%d.%d" % nose.__versioninfo__) 

def _show_system_info(self):
        nose = import_nose()

        import numpy
        print("NumPy version %s" % numpy.__version__)
        relaxed_strides = numpy.ones((10, 1), order="C").flags.f_contiguous
        print("NumPy relaxed strides checking option:", relaxed_strides)
        npdir = os.path.dirname(numpy.__file__)
        print("NumPy is installed in %s" % npdir)

        if 'scipy' in self.package_name:
            import scipy
            print("SciPy version %s" % scipy.__version__)
            spdir = os.path.dirname(scipy.__file__)
            print("SciPy is installed in %s" % spdir)

        pyversion = sys.version.replace('\n', '')
        print("Python version %s" % pyversion)
        print("nose version %d.%d.%d" % nose.__versioninfo__) 

def _show_system_info(self):
        nose = import_nose()

        import numpy
        print("NumPy version %s" % numpy.__version__)
        relaxed_strides = numpy.ones((10, 1), order="C").flags.f_contiguous
        print("NumPy relaxed strides checking option:", relaxed_strides)
        npdir = os.path.dirname(numpy.__file__)
        print("NumPy is installed in %s" % npdir)

        if 'scipy' in self.package_name:
            import scipy
            print("SciPy version %s" % scipy.__version__)
            spdir = os.path.dirname(scipy.__file__)
            print("SciPy is installed in %s" % spdir)

        pyversion = sys.version.replace('\n', '')
        print("Python version %s" % pyversion)
        print("nose version %d.%d.%d" % nose.__versioninfo__) 

def _show_system_info(self):
        nose = import_nose()

        import numpy
        print("NumPy version %s" % numpy.__version__)
        npdir = os.path.dirname(numpy.__file__)
        print("NumPy is installed in %s" % npdir)

        if 'scipy' in self.package_name:
            import scipy
            print("SciPy version %s" % scipy.__version__)
            spdir = os.path.dirname(scipy.__file__)
            print("SciPy is installed in %s" % spdir)

        pyversion = sys.version.replace('\n', '')
        print("Python version %s" % pyversion)
        print("nose version %d.%d.%d" % nose.__versioninfo__) 

def _show_system_info(self):
        nose = import_nose()

        import numpy
        print("NumPy version %s" % numpy.__version__)
        relaxed_strides = numpy.ones((10, 1), order="C").flags.f_contiguous
        print("NumPy relaxed strides checking option:", relaxed_strides)
        npdir = os.path.dirname(numpy.__file__)
        print("NumPy is installed in %s" % npdir)

        if 'scipy' in self.package_name:
            import scipy
            print("SciPy version %s" % scipy.__version__)
            spdir = os.path.dirname(scipy.__file__)
            print("SciPy is installed in %s" % spdir)

        pyversion = sys.version.replace('\n', '')
        print("Python version %s" % pyversion)
        print("nose version %d.%d.%d" % nose.__versioninfo__) 

def add_preconfigured_np(doctest_namespace):
    """
    Fixture executed for every doctest.

    Injects pre-configured numpy into each test's namespace.

    Note that even with this, doctests might fail due to the lack of full
    compatibility when using ``numpy.set_printoptions(legacy='1.13')``.

    Some of the whitespace issues can be fixed by ``NORMALIZE_WHITESPACE``
    doctest option, which is currently set in ``pytest.ini``.

    See: https://github.com/numpy/numpy/issues/10383
    """
    current_version = pkg_resources.parse_version(numpy.__version__)
    doctest_namespace['np'] = numpy 

def _check_modules():
    """Checks whether all dependencies are installed"""

    # [issue #110] bug in line: if numpy.__version__ < "1.6.0":
    # e.g. "1.11.0" < "1.6.0" (False)
    # --- FIX
    # Just replace "X.XX.X" --> distutils.version.LooseVersion("X.XX.X")
    from distutils.version import LooseVersion

    try:
        import numpy
        if LooseVersion(numpy.__version__) < LooseVersion("1.6.0"):
            logger.warning("WARNING: You are using a numpy %s < 1.6.0. This "
                           "might not work", numpy.__version__)
    except:
        raise ImportError("Numpy cannot be imported. Are you sure that it's installed?")

    try:
        import scipy
        if LooseVersion(scipy.__version__) < LooseVersion("0.12.0"):
            logger.warning("WARNING: You are using a scipy %s < 0.12.0. "
                           "This might not work", scipy.__version__)
    except:
        raise ImportError("Scipy cannot be imported. Are you sure that it's installed?") 

def _show_system_info(self):
        nose = import_nose()

        import numpy
        print("NumPy version %s" % numpy.__version__)
        relaxed_strides = numpy.ones((10, 1), order="C").flags.f_contiguous
        print("NumPy relaxed strides checking option:", relaxed_strides)
        npdir = os.path.dirname(numpy.__file__)
        print("NumPy is installed in %s" % npdir)

        if 'scipy' in self.package_name:
            import scipy
            print("SciPy version %s" % scipy.__version__)
            spdir = os.path.dirname(scipy.__file__)
            print("SciPy is installed in %s" % spdir)

        pyversion = sys.version.replace('\n', '')
        print("Python version %s" % pyversion)
        print("nose version %d.%d.%d" % nose.__versioninfo__)