Python getopt.gnu_getopt() Examples
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code examples of getopt.gnu_getopt().
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Example #1
Source File: test_getopt.py From ironpython2 with Apache License 2.0 | 6 votes |
def test_gnu_getopt(self): # Test handling of GNU style scanning mode. cmdline = ['-a', 'arg1', '-b', '1', '--alpha', '--beta=2'] # GNU style opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(args, ['arg1']) self.assertEqual(opts, [('-a', ''), ('-b', '1'), ('--alpha', ''), ('--beta', '2')]) # recognize "-" as an argument opts, args = getopt.gnu_getopt(['-a', '-', '-b', '-'], 'ab:', []) self.assertEqual(args, ['-']) self.assertEqual(opts, [('-a', ''), ('-b', '-')]) # Posix style via + opts, args = getopt.gnu_getopt(cmdline, '+ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2']) # Posix style via POSIXLY_CORRECT self.env["POSIXLY_CORRECT"] = "1" opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2'])
Example #2
Source File: test_getopt.py From CTFCrackTools with GNU General Public License v3.0 | 6 votes |
def test_gnu_getopt(self): # Test handling of GNU style scanning mode. cmdline = ['-a', 'arg1', '-b', '1', '--alpha', '--beta=2'] # GNU style opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(args, ['arg1']) self.assertEqual(opts, [('-a', ''), ('-b', '1'), ('--alpha', ''), ('--beta', '2')]) # recognize "-" as an argument opts, args = getopt.gnu_getopt(['-a', '-', '-b', '-'], 'ab:', []) self.assertEqual(args, ['-']) self.assertEqual(opts, [('-a', ''), ('-b', '-')]) # Posix style via + opts, args = getopt.gnu_getopt(cmdline, '+ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2']) # Posix style via POSIXLY_CORRECT self.env["POSIXLY_CORRECT"] = "1" opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2'])
Example #3
Source File: tldr.py From tldr-alfred with MIT License | 6 votes |
def parse_args(query=''): query = query.split() dic = { 'isUpdate': False, 'platform': default_platform, 'command': '' } try: opts, args = getopt.gnu_getopt(query, 'uo:') except: return dic for opt, arg in opts: if opt == '-u': dic['isUpdate'] = True elif opt == '-o': dic['platform'] = arg dic['command'] = '-'.join(args) return dic
Example #4
Source File: test_getopt.py From CTFCrackTools-V2 with GNU General Public License v3.0 | 6 votes |
def test_gnu_getopt(self): # Test handling of GNU style scanning mode. cmdline = ['-a', 'arg1', '-b', '1', '--alpha', '--beta=2'] # GNU style opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(args, ['arg1']) self.assertEqual(opts, [('-a', ''), ('-b', '1'), ('--alpha', ''), ('--beta', '2')]) # recognize "-" as an argument opts, args = getopt.gnu_getopt(['-a', '-', '-b', '-'], 'ab:', []) self.assertEqual(args, ['-']) self.assertEqual(opts, [('-a', ''), ('-b', '-')]) # Posix style via + opts, args = getopt.gnu_getopt(cmdline, '+ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2']) # Posix style via POSIXLY_CORRECT self.env["POSIXLY_CORRECT"] = "1" opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2'])
Example #5
Source File: test_getopt.py From Project-New-Reign---Nemesis-Main with GNU General Public License v3.0 | 6 votes |
def test_gnu_getopt(self): # Test handling of GNU style scanning mode. cmdline = ['-a', 'arg1', '-b', '1', '--alpha', '--beta=2'] # GNU style opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(args, ['arg1']) self.assertEqual(opts, [('-a', ''), ('-b', '1'), ('--alpha', ''), ('--beta', '2')]) # recognize "-" as an argument opts, args = getopt.gnu_getopt(['-a', '-', '-b', '-'], 'ab:', []) self.assertEqual(args, ['-']) self.assertEqual(opts, [('-a', ''), ('-b', '-')]) # Posix style via + opts, args = getopt.gnu_getopt(cmdline, '+ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2']) # Posix style via POSIXLY_CORRECT self.env["POSIXLY_CORRECT"] = "1" opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2'])
Example #6
Source File: twitter-to-xhtml.py From python-for-android with Apache License 2.0 | 6 votes |
def main(): try: opts, args = getopt.gnu_getopt(sys.argv[1:], 'ho', ['help', 'output=']) except getopt.GetoptError: Usage() sys.exit(2) try: user = args[0] except: Usage() sys.exit(2) output = None for o, a in opts: if o in ("-h", "--help"): Usage() sys.exit(2) if o in ("-o", "--output"): output = a FetchTwitter(user, output)
Example #7
Source File: qi.py From aws-support-tools with Apache License 2.0 | 6 votes |
def main(): option_list = 'region= type= role= key= volume= ami= bootstrap='.split() try: opts, args = getopt.gnu_getopt(sys.argv[1:], '', option_list) except: usage() sys.exit(2) if len(args) > 0: if args[0] == 'configure': configure() elif args[0] in os_list: try: launch(opts, args[0]) except NoCredentialsError: advise_credentials() except: troubleshoot() elif args[0] == 'help': usage() else: usage() else: usage()
Example #8
Source File: test_getopt.py From gcblue with BSD 3-Clause "New" or "Revised" License | 6 votes |
def test_gnu_getopt(self): # Test handling of GNU style scanning mode. cmdline = ['-a', 'arg1', '-b', '1', '--alpha', '--beta=2'] # GNU style opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(args, ['arg1']) self.assertEqual(opts, [('-a', ''), ('-b', '1'), ('--alpha', ''), ('--beta', '2')]) # recognize "-" as an argument opts, args = getopt.gnu_getopt(['-a', '-', '-b', '-'], 'ab:', []) self.assertEqual(args, ['-']) self.assertEqual(opts, [('-a', ''), ('-b', '-')]) # Posix style via + opts, args = getopt.gnu_getopt(cmdline, '+ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2']) # Posix style via POSIXLY_CORRECT self.env["POSIXLY_CORRECT"] = "1" opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2'])
Example #9
Source File: test_getopt.py From ironpython3 with Apache License 2.0 | 6 votes |
def test_gnu_getopt(self): # Test handling of GNU style scanning mode. cmdline = ['-a', 'arg1', '-b', '1', '--alpha', '--beta=2'] # GNU style opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(args, ['arg1']) self.assertEqual(opts, [('-a', ''), ('-b', '1'), ('--alpha', ''), ('--beta', '2')]) # recognize "-" as an argument opts, args = getopt.gnu_getopt(['-a', '-', '-b', '-'], 'ab:', []) self.assertEqual(args, ['-']) self.assertEqual(opts, [('-a', ''), ('-b', '-')]) # Posix style via + opts, args = getopt.gnu_getopt(cmdline, '+ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2']) # Posix style via POSIXLY_CORRECT self.env["POSIXLY_CORRECT"] = "1" opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2'])
Example #10
Source File: test_getopt.py From BinderFilter with MIT License | 6 votes |
def test_gnu_getopt(self): # Test handling of GNU style scanning mode. cmdline = ['-a', 'arg1', '-b', '1', '--alpha', '--beta=2'] # GNU style opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(args, ['arg1']) self.assertEqual(opts, [('-a', ''), ('-b', '1'), ('--alpha', ''), ('--beta', '2')]) # recognize "-" as an argument opts, args = getopt.gnu_getopt(['-a', '-', '-b', '-'], 'ab:', []) self.assertEqual(args, ['-']) self.assertEqual(opts, [('-a', ''), ('-b', '-')]) # Posix style via + opts, args = getopt.gnu_getopt(cmdline, '+ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2']) # Posix style via POSIXLY_CORRECT self.env["POSIXLY_CORRECT"] = "1" opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2'])
Example #11
Source File: test_getopt.py From oss-ftp with MIT License | 6 votes |
def test_gnu_getopt(self): # Test handling of GNU style scanning mode. cmdline = ['-a', 'arg1', '-b', '1', '--alpha', '--beta=2'] # GNU style opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(args, ['arg1']) self.assertEqual(opts, [('-a', ''), ('-b', '1'), ('--alpha', ''), ('--beta', '2')]) # recognize "-" as an argument opts, args = getopt.gnu_getopt(['-a', '-', '-b', '-'], 'ab:', []) self.assertEqual(args, ['-']) self.assertEqual(opts, [('-a', ''), ('-b', '-')]) # Posix style via + opts, args = getopt.gnu_getopt(cmdline, '+ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2']) # Posix style via POSIXLY_CORRECT self.env["POSIXLY_CORRECT"] = "1" opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2'])
Example #12
Source File: start.py From vlcp with Apache License 2.0 | 6 votes |
def parsearg(): try: options, args = getopt.gnu_getopt(sys.argv[1:], 'f:p:F:?hd', 'help') configfile = None pidfile = '/var/run/vlcp.pid' daemon = False fork = None for k,v in options: if k == '--help' or k == '-?' or k == '-h': usage() elif k == '-f': configfile = v elif k == '-p': pidfile = v elif k == '-d': daemon = True elif k == '-F': fork = int(v) startup = None if args: startup = args return (configfile, daemon, pidfile, startup, fork) except getopt.GetoptError as exc: print(exc) usage()
Example #13
Source File: test_getopt.py From Fluid-Designer with GNU General Public License v3.0 | 6 votes |
def test_gnu_getopt(self): # Test handling of GNU style scanning mode. cmdline = ['-a', 'arg1', '-b', '1', '--alpha', '--beta=2'] # GNU style opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(args, ['arg1']) self.assertEqual(opts, [('-a', ''), ('-b', '1'), ('--alpha', ''), ('--beta', '2')]) # recognize "-" as an argument opts, args = getopt.gnu_getopt(['-a', '-', '-b', '-'], 'ab:', []) self.assertEqual(args, ['-']) self.assertEqual(opts, [('-a', ''), ('-b', '-')]) # Posix style via + opts, args = getopt.gnu_getopt(cmdline, '+ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2']) # Posix style via POSIXLY_CORRECT self.env["POSIXLY_CORRECT"] = "1" opts, args = getopt.gnu_getopt(cmdline, 'ab:', ['alpha', 'beta=']) self.assertEqual(opts, [('-a', '')]) self.assertEqual(args, ['arg1', '-b', '1', '--alpha', '--beta=2'])
Example #14
Source File: options.py From honeything with GNU General Public License v3.0 | 5 votes |
def __init__(self, optspec, optfunc=getopt.gnu_getopt, onabort=_default_onabort): self.optspec = optspec self._onabort = onabort self.optfunc = optfunc self._aliases = {} self._shortopts = 'h?' self._longopts = ['help', 'usage'] self._hasparms = {} self._defaults = {} self._usagestr = self._gen_usage()
Example #15
Source File: command.py From zim-desktop-wiki with GNU General Public License v2.0 | 5 votes |
def parse_options(self, *args): '''Parse commandline options for this command Sets the attributes 'args' and 'opts' to a list of arguments and a dictionary of options respectively @param args: all remaining options to be parsed @raises GetOptError: when options are not correct ''' options = '' long_options = [] options_map = {} for l, s, desc in self.default_options + self.options: long_options.append(l) if s and l.endswith('='): options += s + ':' options_map[s] = l.strip('=') elif s: options += s options_map[s] = l optlist, args = gnu_getopt(args, options, long_options) self.args += args for o, a in optlist: key = o.strip('-') key = options_map.get(key, key) if a == '': self.opts[key] = True elif key in self.opts and isinstance(self.opts[key], list): self.opts[key].append(a) else: self.opts[key] = a
Example #16
Source File: tweet.py From python-for-android with Apache License 2.0 | 5 votes |
def main(): try: shortflags = 'h' longflags = ['help', 'username=', 'password=', 'encoding='] opts, args = getopt.gnu_getopt(sys.argv[1:], shortflags, longflags) except getopt.GetoptError: PrintUsageAndExit() usernameflag = None passwordflag = None encoding = None for o, a in opts: if o in ("-h", "--help"): PrintUsageAndExit() if o in ("--username"): usernameflag = a if o in ("--password"): passwordflag = a if o in ("--encoding"): encoding = a message = ' '.join(args) if not message: PrintUsageAndExit() rc = TweetRc() username = usernameflag or GetUsernameEnv() or rc.GetUsername() password = passwordflag or GetPasswordEnv() or rc.GetPassword() if not username or not password: PrintUsageAndExit() api = twitter.Api(username=username, password=password, input_encoding=encoding) try: status = api.PostUpdate(message) except UnicodeDecodeError: print "Your message could not be encoded. Perhaps it contains non-ASCII characters? " print "Try explicitly specifying the encoding with the --encoding flag" sys.exit(2) print "%s just posted: %s" % (status.user.name, status.text)
Example #17
Source File: script.py From vlcp with Apache License 2.0 | 5 votes |
def main(cls): short_opts = 'f:h?' long_opts = ['help'] short_dict = {} for opt in cls.options: hasarg = len(opt) < 3 or opt[2] if hasarg: if len(opt) > 1 and opt[1]: short_opts += opt[1] + ':' short_dict[opt[1]] = opt[0] long_opts.append(opt[0] + '=') else: if len(opt) > 1 and opt[1]: short_opts += opt[1] short_dict[opt[1]] = opt[0] long_opts.append(opt[0]) try: options, args = getopt.gnu_getopt(sys.argv[1:], short_opts, long_opts) except Exception as exc: print(str(exc)) print() print(cls.__doc__) sys.exit(2) else: opt_dict = {} configfile = None for k,v in options: if k == '--help' or k == '-?' or k == '-h': print(cls.__doc__) sys.exit(0) elif k == '-f': configfile = v else: if k.startswith('--'): opt_dict[k[2:]] = v else: opt_dict[short_dict[k[1:]]] = v from vlcp.config import manager manager['main.args'] = args manager['main.kwargs'] = opt_dict server_main(configfile, ('__main__.' + cls.__name__,))
Example #18
Source File: update_hosts.py From ipv6-hosts with MIT License | 5 votes |
def get_config(): shortopts = 'hs:o:t:n:c' longopts = ['help', 'cname'] try: optlist, args = getopt.gnu_getopt(sys.argv[1:], shortopts, longopts) except getopt.GetoptError as e: print(e) print_help() sys.exit(1) global config for key, value in optlist: if key == '-s': config['dns'] = value elif key == '-o': config['outfile'] = value elif key == '-t': config['querytype'] = value elif key in ('-c', '--cname'): config['cname'] = True elif key == '-n': config['threadnum'] = int(value) elif key in ('-h', '--help'): print_help() sys.exit(0) if len(args) != 1: print("You must specify the input hosts file (only one).") sys.exit(1) config['infile'] = args[0] if config['outfile'] == '': config['outfile'] = config['infile'] + '.out'
Example #19
Source File: optval.py From gitinspector with GNU General Public License v3.0 | 5 votes |
def __find_options_to_extend__(long_options): options_to_extend = [] for num, arg in enumerate(long_options): arg = arg.split(":") if len(arg) == 2: long_options[num] = arg[0] + "=" options_to_extend.append(("--" + arg[0], arg[1])) return options_to_extend # This is a duplicate of gnu_getopt, but with support for optional arguments in long options, in the form; "arg:default_value".
Example #20
Source File: optval.py From gitinspector with GNU General Public License v3.0 | 5 votes |
def gnu_getopt(args, options, long_options): options_to_extend = __find_options_to_extend__(long_options) for num, arg in enumerate(args): opt = __find_arg_in_options__(arg, options_to_extend) if opt: args[num] = arg + "=" + opt[1] return getopt.gnu_getopt(args, options, long_options)
Example #21
Source File: emote.py From EmoteCollector with GNU Affero General Public License v3.0 | 4 votes |
def remove(self, context, *names: commands.clean_content): """Removes one or more emotes from the bot. You must own all of them. Optional arguments: -f, --force Whether to forcibly remove the emotes. This option can only be used by emote moderators. """ try: opts, names = getopt.gnu_getopt(names, 'f', ('force',)) except getopt.GetoptError: opts = [] opts = frozenset(dict(opts)) force = False if '-f' in opts or '--force' in opts: if not await self.db.is_moderator(context.author.id): return await context.send(_('Error: only emote moderators may forcibly remove emotes.')) force = True logger = ( (lambda emote: self.logger.on_emote_force_remove(emote, context.author)) if force else self.logger.on_emote_remove) if not names: return await context.send(_('Error: you must provide the name of at least one emote to remove')) messages = {} async with context.typing(): for name in names: arg = fr'\:{name}:' try: emote = await self.db.get_emote(name) except BaseException as error: # XXX messages.setdefault(self._humanize_errors(error), []).append(arg) continue # log the emote removal *first* because if we were to do it afterwards, # the emote would not display (since it's already removed) removal_messages = await logger(emote) try: await self.db.remove_emote(emote, context.author.id, force=force) except (errors.ConnoisseurError, errors.DiscordError) as error: messages.setdefault(self._humanize_errors(error), []).append(arg) # undo the log await asyncio.gather(*map(operator.methodcaller('delete'), removal_messages), return_exceptions=True) else: message = _('**Successfully deleted:**') messages.setdefault((0, message), []).append(emote.escaped_name()) messages = sorted(messages.items()) message = self._format_errors(messages) await context.send(message)
Example #22
Source File: Options.py From broc with Apache License 2.0 | 4 votes |
def OptionBuild(argv): """ Get build or test options. Args: argv : command line argv Return: None : fail options : build or test options options["all_log"] : show all build log options["mode"] : debug or release options["path"] : modular path options["jobs"] : the number of build threads """ options = dict() options["all_log"] = False options["path"] = "" options["mode"] = "debug" options["jobs"] = 4 try: opts, args = getopt.gnu_getopt(argv, "", ["all-log", "mode=", "jobs="]) except getopt.GetoptError as ex: Log.colorprint("DEFAULT", "%s\nType '%s help' for usage" % \ (str(ex), os.path.basename(sys.argv[0])), False) return None if len(args) <= 0: options["path"] = os.getcwd() elif len(args) == 1: options["path"] = args[0] else: Log.colorprint("RED", "invalid arguments %s\nType '%s help' for usage" % \ (str(args), os.path.basename(sys.argv[0])), False) return None for opt, arg in opts: if opt == "--all-log": options["all_log"] = True continue if opt == "--mode": if arg != "debug" and arg != "release": Log.colorprint("RED", "invalid mode %s. Please use debug or release" % arg, False) return None options["mode"] = arg continue if opt == "--jobs": options["jobs"] = int(arg) continue return None return options
Example #23
Source File: tweet-tokenize.py From deepnl with GNU General Public License v3.0 | 4 votes |
def main(): scriptname = os.path.basename(sys.argv[0]) try: long_opts = ['language=', 'help', 'usage'] opts, args = getopt.gnu_getopt(sys.argv[1:], 'l:h', long_opts) except getopt.GetoptError: show_usage(scriptname) show_suggestion(scriptname) sys.exit(1) lang = 'english' for opt, arg in opts: if opt in ('-l', '--language'): lang = arg elif opt in ('-h', '--help'): show_help() return elif opt == '--usage': show_usage(scriptname) return # Tanl modules splitterModel = data + 'split/sentence/' + lang + '.punkt' if os.path.exists(splitterModel): print("No such model:" + splitterModel) return t0 = SentenceSplitter(splitterModel) t1 = Tokenizer() # Field containig tweets text_field = 3 for line in sys.stdin: fields = line.split('\t') p0 = t0.pipe([fields[text_field]]) # SentenceSplitter p1 = t1.pipe(p0) # Tokenizer tokens = [] for t in p1: form = t['FORM'] if form != '\n': tokens.append(form) fields[text_field] = ' '.join(tokens) print('\t'.join(fields))
Example #24
Source File: strace2elastic.py From strace2elastic with MIT License | 4 votes |
def main(argv): input_file = None elastic_host = None container = None # Parse the command-line options try: options, remainder = getopt.gnu_getopt(argv, 'hec:', ['help', 'elastichost=', 'container=']) for opt, arg in options: if opt in ('-h', '--help'): usage() return elif opt in ('-e', '--elastichost'): elastic_host = arg elif opt in ('-c', '--container'): container = arg if len(remainder) > 1: print remainder raise Exception("Too many options") elif len(remainder) == 1: input_file = remainder[0] except Exception as e: sys.stderr.write("%s: %s\n" % (os.path.basename(sys.argv[0]), e)) sys.exit(1) if container is None or container == "": sys.stderr.write("container name cannot be empty\n") sys.exit(1) # Parse strace output and add to elastic search try: sys2elastic(input_file, container, elastic_host) except IOError as e: sys.stderr.write("%s: %s\n" % (os.path.basename(sys.argv[0]), e)) sys.exit(1) # # Entry point to the application #
Example #25
Source File: dipspades_logic.py From SqueezeMeta with GNU General Public License v3.0 | 4 votes |
def parse_arguments(argv, log): try: options, not_options = getopt.gnu_getopt(argv, DS_Args_List.short_options, DS_Args_List.long_options) except getopt.GetoptError: _, exc, _ = sys.exc_info() sys.stderr.write(str(exc) + "\n") sys.stderr.flush() options_storage.usage("", dipspades=True) sys.exit(1) ds_args = DS_Args() for opt, arg in options: if opt == '-o': ds_args.output_dir = abspath(expanduser(arg)) elif opt == '--expect-gaps': ds_args.allow_gaps = True elif opt == '--expect-rearrangements': ds_args.weak_align = True elif opt == '--hap': ds_args.haplocontigs_fnames.append(support.check_file_existence(arg, 'haplocontigs', log, dipspades=True)) elif opt == '-t' or opt == "--threads": ds_args.max_threads = int(arg) elif opt == '-m' or opt == "--memory": ds_args.max_memory = int(arg) elif opt == '--tmp-dir': ds_args.tmp_dir = abspath(expanduser(arg)) elif opt == '--dsdebug': ds_args.dev_mode = True elif opt == '--hap-assembly': ds_args.haplotype_assembly = True elif opt == '--dsK': ds_args.k = int(arg) elif opt == '--saves': ds_args.saves = os.path.abspath(arg) ds_args.dev_mode = True elif opt == '--start-from': ds_args.start_from = ParseStartPoint(arg, log) ds_args.dev_mode = True ds_args.haplocontigs = os.path.join(ds_args.output_dir, "haplocontigs") if not ds_args.output_dir: support.error("the output_dir is not set! It is a mandatory parameter (-o output_dir).", log, dipspades=True) if not ds_args.haplocontigs_fnames and ds_args.start_from == 'dipspades': support.error("cannot start dipSPAdes without at least one haplocontigs file!", log, dipspades=True) if not ds_args.tmp_dir: ds_args.tmp_dir = os.path.join(ds_args.output_dir, options_storage.TMP_DIR) if ds_args.start_from != 'dipspades' and ds_args.saves == '': support.error("saves were not defined! dipSPAdes can not start from " + ds_args.start_from) return ds_args
Example #26
Source File: dev_appserver_main.py From browserscope with Apache License 2.0 | 4 votes |
def ParseArguments(argv): """Parses command-line arguments. Args: argv: Command-line arguments, including the executable name, used to execute this application. Returns: Tuple (args, option_dict) where: args: List of command-line arguments following the executable name. option_dict: Dictionary of parsed flags that maps keys from DEFAULT_ARGS to their values, which are either pulled from the defaults, or from command-line flags. """ option_dict = DEFAULT_ARGS.copy() try: opts, args = getopt.gnu_getopt(argv[1:], OPTIONS, LONG_OPTIONS) except getopt.GetoptError, e: print >>sys.stderr, 'Error: %s' % e PrintUsageExit(1)