Java Code Examples for org.apache.commons.vfs2.FileObject#getType()
The following examples show how to use
org.apache.commons.vfs2.FileObject#getType() .
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Example 1
| Source File: ResourceAgent.java From spoofax with Apache License 2.0 | 6 votes |
|
@Override public String[] readdir(String fn) {
try {
final FileObject resource = resourceService.resolve(workingDir, fn);
if(!resource.exists() || resource.getType() == FileType.FILE) {
return new String[0];
}
final FileName name = resource.getName();
final FileObject[] children = resource.getChildren();
final String[] strings = new String[children.length];
for(int i = 0; i < children.length; ++i) {
final FileName absName = children[i].getName();
strings[i] = name.getRelativeName(absName);
}
return strings;
} catch(FileSystemException e) {
throw new RuntimeException("Could not list contents of directory " + fn, e);
}
}
Example 2
| Source File: RepositoryOpenDialog.java From pentaho-reporting with GNU Lesser General Public License v2.1 | 6 votes |
|
public void setSelectedView( final FileObject selectedView ) {
this.selectedView = selectedView;
if ( selectedView != null ) {
logger.debug( "Setting selected view to " + selectedView );
try {
if ( selectedView.getType() == FileType.FILE ) {
logger.debug( "Setting filename in selected view to " + selectedView.getName().getBaseName() );
this.fileNameTextField.setText( URLDecoder.decode( selectedView.getName().getBaseName(), "UTF-8" ) );
}
} catch ( Exception e ) {
// can be ignored ..
logger.debug( "Unable to determine file type. This is not fatal.", e );
}
final ComboBoxModel comboBoxModel = createLocationModel( selectedView );
this.locationCombo.setModel( comboBoxModel );
this.table.setSelectedPath( (FileObject) comboBoxModel.getSelectedItem() );
} else {
this.fileNameTextField.setText( null );
this.table.setSelectedPath( null );
this.locationCombo.setModel( new DefaultComboBoxModel() );
}
}
Example 3
| Source File: JobEntrySSH2GET.java From pentaho-kettle with Apache License 2.0 | 6 votes |
|
/**
* Check existence of a local file
*
* @param filename
* @return true, if file exists
*/
public boolean FileExists( String filename ) {
FileObject file = null;
try {
file = KettleVFS.getFileObject( filename, this );
if ( !file.exists() ) {
return false;
} else {
if ( file.getType() == FileType.FILE ) {
return true;
} else {
return false;
}
}
} catch ( Exception e ) {
return false;
}
}
Example 4
| Source File: RepositoryPublishDialog.java From pentaho-reporting with GNU Lesser General Public License v2.1 | 6 votes |
|
/**
* Called whenever the value of the selection changes.
*
* @param e
* the event that characterizes the change.
*/
public void valueChanged( final ListSelectionEvent e ) {
final int selectedRow = getTable().getSelectedRow();
if ( selectedRow == -1 ) {
return;
}
final FileObject selectedFileObject = getTable().getSelectedFileObject( selectedRow );
if ( selectedFileObject == null ) {
return;
}
try {
if ( selectedFileObject.getType() == FileType.FILE ) {
getFileNameTextField().setText( selectedFileObject.getName().getBaseName() );
}
} catch ( FileSystemException e1 ) {
// ignore ..
}
}
Example 5
| Source File: RepositoryTreeCellRenderer.java From pentaho-reporting with GNU Lesser General Public License v2.1 | 6 votes |
|
public Component getTreeCellRendererComponent( final JTree tree,
final Object value,
final boolean sel,
final boolean expanded,
final boolean leaf,
final int row,
final boolean hasFocus ) {
final JLabel component =
(JLabel) super.getTreeCellRendererComponent( tree, value, sel, expanded, leaf, row, hasFocus );
if ( value instanceof FileObject ) {
final FileObject node = (FileObject) value;
try {
if ( leaf && ( node.getType() == FileType.FOLDER ) ) {
component.setIcon( getOpenIcon() );
}
} catch ( FileSystemException fse ) {
// ignore exception here
}
component.setText( node.getName().getBaseName() );
} else {
component.setText( "/" );
component.setIcon( getOpenIcon() );
}
return component;
}
Example 6
| Source File: JarUtils.java From spring-boot-jar-resources with Apache License 2.0 | 6 votes |
|
@SneakyThrows
private static File copyToDir(FileObject jarredFile, File destination, boolean retryIfImaginary) {
switch (jarredFile.getType()) {
case FILE:
return copyFileToDir(jarredFile, destination);
case FOLDER:
return copyDirToDir(jarredFile, destination);
case IMAGINARY:
if (retryIfImaginary) {
log.debug("Imaginary file found, retrying extraction");
VFS.getManager().getFilesCache().removeFile(jarredFile.getFileSystem(), jarredFile.getName());
FileObject newJarredFile = VFS.getManager().resolveFile(jarredFile.getName().getURI());
return copyToDir(newJarredFile, destination, false);
} else {
log.debug("Imaginary file found after retry, abandoning retry");
}
default:
throw new IllegalStateException("File Type not supported: " + jarredFile.getType());
}
}
Example 7
| Source File: FtpFileObject.java From commons-vfs with Apache License 2.0 | 5 votes |
|
/**
* Determines the type of the file, returns null if the file does not exist.
*/
@Override
protected FileType doGetType() throws Exception {
// VFS-210
synchronized (getFileSystem()) {
if (this.fileInfo == null) {
getInfo(false);
}
if (this.fileInfo == UNKNOWN) {
return FileType.IMAGINARY;
} else if (this.fileInfo.isDirectory()) {
return FileType.FOLDER;
} else if (this.fileInfo.isFile()) {
return FileType.FILE;
} else if (this.fileInfo.isSymbolicLink()) {
final FileObject linkDest = getLinkDestination();
// VFS-437: We need to check if the symbolic link links back to the symbolic link itself
if (this.isCircular(linkDest)) {
// If the symbolic link links back to itself, treat it as an imaginary file to prevent following
// this link. If the user tries to access the link as a file or directory, the user will end up with
// a FileSystemException warning that the file cannot be accessed. This is to prevent the infinite
// call back to doGetType() to prevent the StackOverFlow
return FileType.IMAGINARY;
}
return linkDest.getType();
}
}
throw new FileSystemException("vfs.provider.ftp/get-type.error", getName());
}
Example 8
| Source File: RepositoryTableModel.java From pentaho-reporting with GNU Lesser General Public License v2.1 | 5 votes |
|
public FileObject getElementForRow( final int row ) {
if ( selectedPath == null ) {
return null;
}
try {
if ( selectedPath.getType() != FileType.FOLDER ) {
return null;
}
final FileObject[] children = selectedPath.getChildren();
int count = 0;
for ( int i = 0; i < children.length; i++ ) {
final FileObject child = children[i];
if ( isShowHiddenFiles() == false && child.isHidden() ) {
continue;
}
if ( child.getType() != FileType.FOLDER ) {
if ( PublishUtil.acceptFilter( filters, child.getName().getBaseName() ) == false ) {
continue;
}
}
if ( count == row ) {
return child;
}
count += 1;
}
return null;
} catch ( FileSystemException fse ) {
UncaughtExceptionsModel.getInstance().addException( fse );
return null;
}
}
Example 9
| Source File: FTPRemoteDownloadSourceDelegate.java From datacollector with Apache License 2.0 | 5 votes |
|
@Override
public void queueFiles(FileQueueChecker fqc, NavigableSet<RemoteFile> fileQueue, FileFilter fileFilter) throws
IOException, StageException {
verifyAndReconnect();
FileObject[] theFiles = remoteDir.getChildren();
if (conf.processSubDirectories) {
theFiles = ArrayUtils.addAll(theFiles, remoteDir.findFiles(fileFilter));
}
for (FileObject file : theFiles) {
String path = relativizeToRoot(file.getName().getPath());
LOG.debug("Checking {}", path);
if (file.getType() != FileType.FILE) {
LOG.trace("Skipping {} because it is not a file", path);
continue;
}
//check if base name matches - not full path.
Matcher matcher = fileFilter.getRegex().matcher(file.getName().getBaseName());
if (!matcher.matches()) {
LOG.trace("Skipping {} because it does not match the regex", path);
continue;
}
RemoteFile tempFile = new FTPRemoteFile(path, getModTime(file), file);
if (fqc.shouldQueue(tempFile)) {
LOG.debug("Queuing file {} with modtime {}", tempFile.getFilePath(), tempFile.getLastModified());
// If we are done with all files, the files with the final mtime might get re-ingested over and over.
// So if it is the one of those, don't pull it in.
fileQueue.add(tempFile);
}
}
}
Example 10
| Source File: Shell.java From commons-vfs with Apache License 2.0 | 5 votes |
|
/**
* Does a 'cp' command.
*/
private void cp(final String[] cmd) throws Exception {
if (cmd.length < 3) {
throw new Exception("USAGE: cp <src> <dest>");
}
final FileObject src = mgr.resolveFile(cwd, cmd[1]);
FileObject dest = mgr.resolveFile(cwd, cmd[2]);
if (dest.exists() && dest.getType() == FileType.FOLDER) {
dest = dest.resolveFile(src.getName().getBaseName());
}
dest.copyFrom(src, Selectors.SELECT_ALL);
}
Example 11
| Source File: RepositoryEntryCellRenderer.java From pentaho-reporting with GNU Lesser General Public License v2.1 | 5 votes |
|
public Component getTableCellRendererComponent( final JTable table,
final Object value,
final boolean isSelected,
final boolean hasFocus,
final int row,
final int column ) {
final JLabel component =
(JLabel) super.getTableCellRendererComponent( table, value, isSelected, hasFocus, row, column );
try {
if ( column == 0 ) {
final RepositoryTableModel tableModel = (RepositoryTableModel) table.getModel();
final RowSorter rowSorter = table.getRowSorter();
final FileObject e;
if ( rowSorter != null ) {
e = tableModel.getElementForRow( rowSorter.convertRowIndexToModel( row ) );
} else {
e = tableModel.getElementForRow( row );
}
if ( e.getType() == FileType.FOLDER ) {
component.setIcon( closedIcon );
} else {
component.setIcon( leafIcon );
}
} else {
component.setIcon( null );
}
} catch ( FileSystemException fse ) {
// ok, ugly, but not fatal.
}
return component;
}
Example 12
| Source File: PubmedArchiveCollectionReader.java From bluima with Apache License 2.0 | 5 votes |
|
private NextArticle getNextArticle() throws IOException {
while (directoryIterator.hasNext()) {
File f = directoryIterator.next();
LOG.debug("extracting " + f.getAbsolutePath());
try {
FileObject archive = fsManager.resolveFile("tgz:file://"
+ f.getAbsolutePath());
// List the children of the archive file
FileObject[] children = archive.getChildren()[0].getChildren();
for (int i = 0; i < children.length; i++) {
FileObject fo = children[i];
if (fo.isReadable() && fo.getType() == FileType.FILE
&& fo.getName().getExtension().equals("nxml")) {
FileContent fc = fo.getContent();
Article article = archiveArticleParser.parse(fc
.getInputStream());
NextArticle nextArticle = new NextArticle();
nextArticle.article = article;
nextArticle.file = f.getAbsolutePath();
return nextArticle;
}
}
} catch (Exception e) {
LOG.error("Error extracting " + f.getAbsolutePath() + ", " + e);
}
}
return null;
}
Example 13
| Source File: RepositoryOpenDialog.java From pentaho-reporting with GNU Lesser General Public License v2.1 | 5 votes |
|
public String performOpen( final AuthenticationData loginData, final String previousSelection )
throws FileSystemException, UnsupportedEncodingException {
fileSystemRoot = PublishUtil.createVFSConnection( VFS.getManager(), loginData );
if ( previousSelection == null ) {
setSelectedView( fileSystemRoot );
} else {
final FileObject view = fileSystemRoot.resolveFile( previousSelection );
if ( view == null ) {
setSelectedView( fileSystemRoot );
} else {
if ( view.exists() == false ) {
setSelectedView( fileSystemRoot );
} else if ( view.getType() == FileType.FOLDER ) {
setSelectedView( view );
} else {
setSelectedView( view.getParent() );
}
}
}
if ( StringUtils.isEmpty( fileNameTextField.getText(), true ) && previousSelection != null ) {
final String fileName = IOUtils.getInstance().getFileName( previousSelection );
DebugLog.log( "Setting filename to " + fileName );
fileNameTextField.setText( fileName );
}
getConfirmAction().setEnabled( validateInputs( false ) );
if ( super.performEdit() == false || selectedView == null ) {
return null;
}
return getSelectedFile();
}
Example 14
| Source File: Shell.java From commons-vfs with Apache License 2.0 | 5 votes |
|
/**
* Does an 'ls' command.
*/
private void ls(final String[] cmd) throws FileSystemException {
int pos = 1;
final boolean recursive;
if (cmd.length > pos && cmd[pos].equals("-R")) {
recursive = true;
pos++;
} else {
recursive = false;
}
final FileObject file;
if (cmd.length > pos) {
file = mgr.resolveFile(cwd, cmd[pos]);
} else {
file = cwd;
}
if (file.getType() == FileType.FOLDER) {
// List the contents
System.out.println("Contents of " + file.getName());
listChildren(file, recursive, "");
} else {
// Stat the file
System.out.println(file.getName());
final FileContent content = file.getContent();
System.out.println("Size: " + content.getSize() + " bytes.");
final DateFormat dateFormat = DateFormat.getDateTimeInstance(DateFormat.MEDIUM, DateFormat.MEDIUM);
final String lastMod = dateFormat.format(new Date(content.getLastModifiedTime()));
System.out.println("Last modified: " + lastMod);
}
}
Example 15
| Source File: RepositoryTreeModel.java From pentaho-reporting with GNU Lesser General Public License v2.1 | 5 votes |
|
/**
* Returns the number of children of <code>parent</code>. Returns 0 if the node is a leaf or if it has no children.
* <code>parent</code> must be a node previously obtained from this data source.
*
* @param parent
* a node in the tree, obtained from this data source
* @return the number of children of the node <code>parent</code>
*/
public int getChildCount( Object parent ) {
if ( parent instanceof RepositoryTreeRoot ) {
final RepositoryTreeRoot root1 = (RepositoryTreeRoot) parent;
parent = root1.getRoot();
if ( parent == null ) {
return 0;
}
}
try {
final FileObject parElement = (FileObject) parent;
if ( parElement.getType() != FileType.FOLDER ) {
return 0;
}
final FileObject[] children = parElement.getChildren();
int count = 0;
for ( int i = 0; i < children.length; i++ ) {
final FileObject child = children[i];
if ( isShowFoldersOnly() && child.getType() != FileType.FOLDER ) {
continue;
}
if ( isShowHiddenFiles() == false && child.isHidden() ) {
continue;
}
if ( child.getType() != FileType.FOLDER
&& PublishUtil.acceptFilter( filters, child.getName().getBaseName() ) == false ) {
continue;
}
count += 1;
}
return count;
} catch ( FileSystemException fse ) {
logger.debug( "Failed", fse );
return 0;
}
}
Example 16
| Source File: JobEntryGetPOP.java From pentaho-kettle with Apache License 2.0 | 4 votes |
|
String createOutputDirectory( int folderType ) throws KettleException, FileSystemException, IllegalArgumentException {
if ( ( folderType != JobEntryGetPOP.FOLDER_OUTPUT ) && ( folderType != JobEntryGetPOP.FOLDER_ATTACHMENTS ) ) {
throw new IllegalArgumentException( "Invalid folderType argument" );
}
String folderName = "";
switch ( folderType ) {
case JobEntryGetPOP.FOLDER_OUTPUT:
folderName = getRealOutputDirectory();
break;
case JobEntryGetPOP.FOLDER_ATTACHMENTS:
if ( isSaveAttachment() && isDifferentFolderForAttachment() ) {
folderName = getRealAttachmentFolder();
} else {
folderName = getRealOutputDirectory();
}
break;
}
if ( Utils.isEmpty( folderName ) ) {
switch ( folderType ) {
case JobEntryGetPOP.FOLDER_OUTPUT:
throw new KettleException( BaseMessages
.getString( PKG, "JobGetMailsFromPOP.Error.OutputFolderEmpty" ) );
case JobEntryGetPOP.FOLDER_ATTACHMENTS:
throw new KettleException( BaseMessages
.getString( PKG, "JobGetMailsFromPOP.Error.AttachmentFolderEmpty" ) );
}
}
FileObject folder = KettleVFS.getFileObject( folderName, this );
if ( folder.exists() ) {
if ( folder.getType() != FileType.FOLDER ) {
switch ( folderType ) {
case JobEntryGetPOP.FOLDER_OUTPUT:
throw new KettleException( BaseMessages.getString(
PKG, "JobGetMailsFromPOP.Error.NotAFolderNot", folderName ) );
case JobEntryGetPOP.FOLDER_ATTACHMENTS:
throw new KettleException( BaseMessages.getString(
PKG, "JobGetMailsFromPOP.Error.AttachmentFolderNotAFolder", folderName ) );
}
}
if ( isDebug() ) {
switch ( folderType ) {
case JobEntryGetPOP.FOLDER_OUTPUT:
logDebug( BaseMessages.getString( PKG, "JobGetMailsFromPOP.Log.OutputFolderExists", folderName ) );
break;
case JobEntryGetPOP.FOLDER_ATTACHMENTS:
logDebug( BaseMessages.getString( PKG, "JobGetMailsFromPOP.Log.AttachmentFolderExists", folderName ) );
break;
}
}
} else {
if ( isCreateLocalFolder() ) {
folder.createFolder();
} else {
switch ( folderType ) {
case JobEntryGetPOP.FOLDER_OUTPUT:
throw new KettleException( BaseMessages.getString(
PKG, "JobGetMailsFromPOP.Error.OutputFolderNotExist", folderName ) );
case JobEntryGetPOP.FOLDER_ATTACHMENTS:
throw new KettleException( BaseMessages.getString(
PKG, "JobGetMailsFromPOP.Error.AttachmentFolderNotExist", folderName ) );
}
}
}
String returnValue = KettleVFS.getFilename( folder );
try {
folder.close();
} catch ( IOException ignore ) {
//Ignore error, as the folder was created successfully
}
return returnValue;
}
Example 17
| Source File: JobEntryCreateFolder.java From pentaho-kettle with Apache License 2.0 | 4 votes |
|
public Result execute( Result previousResult, int nr ) {
Result result = previousResult;
result.setResult( false );
if ( foldername != null ) {
//Set Embedded NamedCluter MetatStore Provider Key so that it can be passed to VFS
if ( parentJobMeta.getNamedClusterEmbedManager() != null ) {
parentJobMeta.getNamedClusterEmbedManager()
.passEmbeddedMetastoreKey( this, parentJobMeta.getEmbeddedMetastoreProviderKey() );
}
String realFoldername = getRealFoldername();
FileObject folderObject = null;
try {
folderObject = KettleVFS.getFileObject( realFoldername, this );
if ( folderObject.exists() ) {
boolean isFolder = false;
// Check if it's a folder
if ( folderObject.getType() == FileType.FOLDER ) {
isFolder = true;
}
if ( isFailOfFolderExists() ) {
// Folder exists and fail flag is on.
result.setResult( false );
if ( isFolder ) {
logError( "Folder [" + realFoldername + "] exists, failing." );
} else {
logError( "File [" + realFoldername + "] exists, failing." );
}
} else {
// Folder already exists, no reason to try to create it
result.setResult( true );
if ( log.isDetailed() ) {
logDetailed( "Folder [" + realFoldername + "] already exists, not recreating." );
}
}
} else {
// No Folder yet, create an empty Folder.
folderObject.createFolder();
if ( log.isDetailed() ) {
logDetailed( "Folder [" + realFoldername + "] created!" );
}
result.setResult( true );
}
} catch ( Exception e ) {
logError( "Could not create Folder [" + realFoldername + "]", e );
result.setResult( false );
result.setNrErrors( 1 );
} finally {
if ( folderObject != null ) {
try {
folderObject.close();
} catch ( IOException ex ) { /* Ignore */
}
}
}
} else {
logError( "No Foldername is defined." );
}
return result;
}
Example 18
| Source File: ActionDeleteFiles.java From hop with Apache License 2.0 | 4 votes |
|
boolean processFile( String path, String wildcard, IWorkflowEngine<WorkflowMeta> parentWorkflow ) {
boolean isDeleted = false;
FileObject fileFolder = null;
try {
fileFolder = HopVfs.getFileObject( path );
if ( fileFolder.exists() ) {
if ( fileFolder.getType() == FileType.FOLDER ) {
if ( log.isDetailed() ) {
logDetailed( BaseMessages.getString( PKG, "ActionDeleteFiles.ProcessingFolder", path ) );
}
int totalDeleted = fileFolder.delete( new TextFileSelector( fileFolder.toString(), wildcard, parentWorkflow ) );
if ( log.isDetailed() ) {
logDetailed(
BaseMessages.getString( PKG, "ActionDeleteFiles.TotalDeleted", String.valueOf( totalDeleted ) ) );
}
isDeleted = true;
} else {
if ( log.isDetailed() ) {
logDetailed( BaseMessages.getString( PKG, "ActionDeleteFiles.ProcessingFile", path ) );
}
isDeleted = fileFolder.delete();
if ( !isDeleted ) {
logError( BaseMessages.getString( PKG, "ActionDeleteFiles.CouldNotDeleteFile", path ) );
} else {
if ( log.isBasic() ) {
logBasic( BaseMessages.getString( PKG, "ActionDeleteFiles.FileDeleted", path ) );
}
}
}
} else {
// File already deleted, no reason to try to delete it
if ( log.isBasic() ) {
logBasic( BaseMessages.getString( PKG, "ActionDeleteFiles.FileAlreadyDeleted", path ) );
}
isDeleted = true;
}
} catch ( Exception e ) {
logError( BaseMessages.getString( PKG, "ActionDeleteFiles.CouldNotProcess", path, e
.getMessage() ), e );
} finally {
if ( fileFolder != null ) {
try {
fileFolder.close();
} catch ( IOException ex ) {
// Ignore
}
}
}
return isDeleted;
}
Example 19
| Source File: ActionGetPOP.java From hop with Apache License 2.0 | 4 votes |
|
String createOutputDirectory( int folderType ) throws HopException, FileSystemException, IllegalArgumentException {
if ( ( folderType != ActionGetPOP.FOLDER_OUTPUT ) && ( folderType != ActionGetPOP.FOLDER_ATTACHMENTS ) ) {
throw new IllegalArgumentException( "Invalid folderType argument" );
}
String folderName = "";
switch ( folderType ) {
case ActionGetPOP.FOLDER_OUTPUT:
folderName = getRealOutputDirectory();
break;
case ActionGetPOP.FOLDER_ATTACHMENTS:
if ( isSaveAttachment() && isDifferentFolderForAttachment() ) {
folderName = getRealAttachmentFolder();
} else {
folderName = getRealOutputDirectory();
}
break;
}
if ( Utils.isEmpty( folderName ) ) {
switch ( folderType ) {
case ActionGetPOP.FOLDER_OUTPUT:
throw new HopException( BaseMessages
.getString( PKG, "JobGetMailsFromPOP.Error.OutputFolderEmpty" ) );
case ActionGetPOP.FOLDER_ATTACHMENTS:
throw new HopException( BaseMessages
.getString( PKG, "JobGetMailsFromPOP.Error.AttachmentFolderEmpty" ) );
}
}
FileObject folder = HopVfs.getFileObject( folderName );
if ( folder.exists() ) {
if ( folder.getType() != FileType.FOLDER ) {
switch ( folderType ) {
case ActionGetPOP.FOLDER_OUTPUT:
throw new HopException( BaseMessages.getString(
PKG, "JobGetMailsFromPOP.Error.NotAFolderNot", folderName ) );
case ActionGetPOP.FOLDER_ATTACHMENTS:
throw new HopException( BaseMessages.getString(
PKG, "JobGetMailsFromPOP.Error.AttachmentFolderNotAFolder", folderName ) );
}
}
if ( isDebug() ) {
switch ( folderType ) {
case ActionGetPOP.FOLDER_OUTPUT:
logDebug( BaseMessages.getString( PKG, "JobGetMailsFromPOP.Log.OutputFolderExists", folderName ) );
break;
case ActionGetPOP.FOLDER_ATTACHMENTS:
logDebug( BaseMessages.getString( PKG, "JobGetMailsFromPOP.Log.AttachmentFolderExists", folderName ) );
break;
}
}
} else {
if ( isCreateLocalFolder() ) {
folder.createFolder();
} else {
switch ( folderType ) {
case ActionGetPOP.FOLDER_OUTPUT:
throw new HopException( BaseMessages.getString(
PKG, "JobGetMailsFromPOP.Error.OutputFolderNotExist", folderName ) );
case ActionGetPOP.FOLDER_ATTACHMENTS:
throw new HopException( BaseMessages.getString(
PKG, "JobGetMailsFromPOP.Error.AttachmentFolderNotExist", folderName ) );
}
}
}
String returnValue = HopVfs.getFilename( folder );
try {
folder.close();
} catch ( IOException ignore ) {
//Ignore error, as the folder was created successfully
}
return returnValue;
}
Example 20
| Source File: AbstractReader.java From bluima with Apache License 2.0 | 4 votes |
|
public static void main(String[] args) throws Exception {
FileSystemManager fsManager = VFS.getManager();
final Pattern pmidP = Pattern
.compile("<PMID Version=\"\\d+\">(.*?)</PMID>");
DirectoryIterator it = new DefaultDirectoryIterator();
it.setDirectory(new File(
// "/Volumes/HDD2/ren_scratch/Dropbox/dev_shared/tmp3/"));
"/Volumes/simulation/nip/pubmed_gzip/medline14/"));
it.setExtensionFilter("xml.gz");
it.setRecursive(false);
Iterator<File> fit = it.iterator();
while (fit.hasNext()) {
File f = fit.next();
// "medline14n0456.xml.gz" --> 456
int archiveId = parseInt(f.getName().substring(10, 14));
if (archiveId > 755) {
try {
FileObject archive = fsManager.resolveFile("gz:file://"
+ f.getAbsolutePath());
FileObject fo = archive.getChildren()[0];
LOG.debug("extracted file {} from archive {}",
fo.getName(), f.getName());
if (fo.isReadable() && fo.getType() == FileType.FILE) {
FileContent fc = fo.getContent();
String articles = IOUtils.toString(fc.getInputStream(),
"UTF-8");
String[] split = articles.split("<MedlineCitation");
for (int i = 1; i < split.length - 1; i++) {
String article = "<MedlineCitation" + split[i];
if (!article.startsWith("<MedlineCitationSet>")) {
Matcher matcher = pmidP.matcher(article);
if (matcher.find()) {
int pmid = Integer.parseInt(matcher
.group(1));
String filePath = StructuredDirectory
.getFilePath(pmid, "xml");
File file = new File(
// "/Volumes/HDD2/ren_scratch/Dropbox/dev_shared/tmp3/xml/"
"/Volumes/simulation/nip/pubmed_xml/"
+ filePath);
file.getParentFile().mkdirs();
// System.out.println(pmid);
FileOutputStream out = new FileOutputStream(
file);
IOUtils.write(article, out);
IOUtils.closeQuietly(out);
} else {
System.err
.println("could not extract pmid from "
+ article);
}
}
}
}
} catch (Throwable e) {
LOG.error("error with " + f.getName(), e);
}
}
}
}
