Java Code Examples for org.jfree.chart.axis.NumberAxis#setTickLabelInsets()
The following examples show how to use
org.jfree.chart.axis.NumberAxis#setTickLabelInsets() .
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Example 1
| Source File: ChartFactory.java From buffer_bci with GNU General Public License v3.0 | 6 votes |
|
/**
* Creates a polar plot for the specified dataset (x-values interpreted as
* angles in degrees). The chart object returned by this method uses a
* {@link PolarPlot} instance as the plot, with a {@link NumberAxis} for
* the radial axis.
*
* @param title the chart title (<code>null</code> permitted).
* @param dataset the dataset (<code>null</code> permitted).
* @param legend legend required?
* @param tooltips tooltips required?
* @param urls URLs required?
*
* @return A chart.
*/
public static JFreeChart createPolarChart(String title, XYDataset dataset,
boolean legend, boolean tooltips, boolean urls) {
PolarPlot plot = new PolarPlot();
plot.setDataset(dataset);
NumberAxis rangeAxis = new NumberAxis();
rangeAxis.setAxisLineVisible(false);
rangeAxis.setTickMarksVisible(false);
rangeAxis.setTickLabelInsets(new RectangleInsets(0.0, 0.0, 0.0, 0.0));
plot.setAxis(rangeAxis);
plot.setRenderer(new DefaultPolarItemRenderer());
JFreeChart chart = new JFreeChart(
title, JFreeChart.DEFAULT_TITLE_FONT, plot, legend);
currentTheme.apply(chart);
return chart;
}
Example 2
| Source File: ChartFactory.java From buffer_bci with GNU General Public License v3.0 | 6 votes |
|
/**
* Creates a polar plot for the specified dataset (x-values interpreted as
* angles in degrees). The chart object returned by this method uses a
* {@link PolarPlot} instance as the plot, with a {@link NumberAxis} for
* the radial axis.
*
* @param title the chart title (<code>null</code> permitted).
* @param dataset the dataset (<code>null</code> permitted).
* @param legend legend required?
* @param tooltips tooltips required?
* @param urls URLs required?
*
* @return A chart.
*/
public static JFreeChart createPolarChart(String title, XYDataset dataset,
boolean legend, boolean tooltips, boolean urls) {
PolarPlot plot = new PolarPlot();
plot.setDataset(dataset);
NumberAxis rangeAxis = new NumberAxis();
rangeAxis.setAxisLineVisible(false);
rangeAxis.setTickMarksVisible(false);
rangeAxis.setTickLabelInsets(new RectangleInsets(0.0, 0.0, 0.0, 0.0));
plot.setAxis(rangeAxis);
plot.setRenderer(new DefaultPolarItemRenderer());
JFreeChart chart = new JFreeChart(
title, JFreeChart.DEFAULT_TITLE_FONT, plot, legend);
currentTheme.apply(chart);
return chart;
}
Example 3
| Source File: ChartFactory.java From opensim-gui with Apache License 2.0 | 6 votes |
|
/**
* Creates a polar plot for the specified dataset (x-values interpreted as
* angles in degrees). The chart object returned by this method uses a
* {@link PolarPlot} instance as the plot, with a {@link NumberAxis} for
* the radial axis.
*
* @param title the chart title (<code>null</code> permitted).
* @param dataset the dataset (<code>null</code> permitted).
* @param legend legend required?
* @param tooltips tooltips required?
* @param urls URLs required?
*
* @return A chart.
*/
public static JFreeChart createPolarChart(String title,
XYDataset dataset,
boolean legend,
boolean tooltips,
boolean urls) {
PolarPlot plot = new PolarPlot();
plot.setDataset(dataset);
NumberAxis rangeAxis = new NumberAxis();
rangeAxis.setAxisLineVisible(false);
rangeAxis.setTickMarksVisible(false);
rangeAxis.setTickLabelInsets(new RectangleInsets(0.0, 0.0, 0.0, 0.0));
plot.setAxis(rangeAxis);
plot.setRenderer(new DefaultPolarItemRenderer());
JFreeChart chart = new JFreeChart(
title, JFreeChart.DEFAULT_TITLE_FONT, plot, legend);
return chart;
}
Example 4
| Source File: ChartFactory.java From ccu-historian with GNU General Public License v3.0 | 6 votes |
|
/**
* Creates a polar plot for the specified dataset (x-values interpreted as
* angles in degrees). The chart object returned by this method uses a
* {@link PolarPlot} instance as the plot, with a {@link NumberAxis} for
* the radial axis.
*
* @param title the chart title (<code>null</code> permitted).
* @param dataset the dataset (<code>null</code> permitted).
* @param legend legend required?
* @param tooltips tooltips required?
* @param urls URLs required?
*
* @return A chart.
*/
public static JFreeChart createPolarChart(String title, XYDataset dataset,
boolean legend, boolean tooltips, boolean urls) {
PolarPlot plot = new PolarPlot();
plot.setDataset(dataset);
NumberAxis rangeAxis = new NumberAxis();
rangeAxis.setAxisLineVisible(false);
rangeAxis.setTickMarksVisible(false);
rangeAxis.setTickLabelInsets(new RectangleInsets(0.0, 0.0, 0.0, 0.0));
plot.setAxis(rangeAxis);
plot.setRenderer(new DefaultPolarItemRenderer());
JFreeChart chart = new JFreeChart(
title, JFreeChart.DEFAULT_TITLE_FONT, plot, legend);
currentTheme.apply(chart);
return chart;
}
Example 5
| Source File: ChartFactory.java From SIMVA-SoS with Apache License 2.0 | 6 votes |
|
/**
* Creates a polar plot for the specified dataset (x-values interpreted as
* angles in degrees). The chart object returned by this method uses a
* {@link PolarPlot} instance as the plot, with a {@link NumberAxis} for
* the radial axis.
*
* @param title the chart title (<code>null</code> permitted).
* @param dataset the dataset (<code>null</code> permitted).
* @param legend legend required?
* @param tooltips tooltips required?
* @param urls URLs required?
*
* @return A chart.
*/
public static JFreeChart createPolarChart(String title, XYDataset dataset,
boolean legend, boolean tooltips, boolean urls) {
PolarPlot plot = new PolarPlot();
plot.setDataset(dataset);
NumberAxis rangeAxis = new NumberAxis();
rangeAxis.setAxisLineVisible(false);
rangeAxis.setTickMarksVisible(false);
rangeAxis.setTickLabelInsets(new RectangleInsets(0.0, 0.0, 0.0, 0.0));
plot.setAxis(rangeAxis);
plot.setRenderer(new DefaultPolarItemRenderer());
JFreeChart chart = new JFreeChart(
title, JFreeChart.DEFAULT_TITLE_FONT, plot, legend);
currentTheme.apply(chart);
return chart;
}
Example 6
| Source File: ChartFactory.java From astor with GNU General Public License v2.0 | 6 votes |
|
/**
* Creates a polar plot for the specified dataset (x-values interpreted as
* angles in degrees). The chart object returned by this method uses a
* {@link PolarPlot} instance as the plot, with a {@link NumberAxis} for
* the radial axis.
*
* @param title the chart title (<code>null</code> permitted).
* @param dataset the dataset (<code>null</code> permitted).
* @param legend legend required?
* @param tooltips tooltips required?
* @param urls URLs required?
*
* @return A chart.
*/
public static JFreeChart createPolarChart(String title,
XYDataset dataset,
boolean legend,
boolean tooltips,
boolean urls) {
PolarPlot plot = new PolarPlot();
plot.setDataset(dataset);
NumberAxis rangeAxis = new NumberAxis();
rangeAxis.setAxisLineVisible(false);
rangeAxis.setTickMarksVisible(false);
rangeAxis.setTickLabelInsets(new RectangleInsets(0.0, 0.0, 0.0, 0.0));
plot.setAxis(rangeAxis);
plot.setRenderer(new DefaultPolarItemRenderer());
JFreeChart chart = new JFreeChart(
title, JFreeChart.DEFAULT_TITLE_FONT, plot, legend);
return chart;
}
Example 7
| Source File: ChartFactory.java From astor with GNU General Public License v2.0 | 6 votes |
|
/**
* Creates a polar plot for the specified dataset (x-values interpreted as
* angles in degrees). The chart object returned by this method uses a
* {@link PolarPlot} instance as the plot, with a {@link NumberAxis} for
* the radial axis.
*
* @param title the chart title (<code>null</code> permitted).
* @param dataset the dataset (<code>null</code> permitted).
* @param legend legend required?
*
* @return A chart.
*/
public static JFreeChart createPolarChart(String title, XYDataset dataset,
boolean legend) {
PolarPlot plot = new PolarPlot();
plot.setDataset(dataset);
NumberAxis rangeAxis = new NumberAxis();
rangeAxis.setAxisLineVisible(false);
rangeAxis.setTickMarksVisible(false);
rangeAxis.setTickLabelInsets(new RectangleInsets(0.0, 0.0, 0.0, 0.0));
plot.setAxis(rangeAxis);
plot.setRenderer(new DefaultPolarItemRenderer());
JFreeChart chart = new JFreeChart(
title, JFreeChart.DEFAULT_TITLE_FONT, plot, legend);
currentTheme.apply(chart);
return chart;
}
Example 8
| Source File: ChartFactory.java From openstock with GNU General Public License v3.0 | 6 votes |
|
/**
* Creates a polar plot for the specified dataset (x-values interpreted as
* angles in degrees). The chart object returned by this method uses a
* {@link PolarPlot} instance as the plot, with a {@link NumberAxis} for
* the radial axis.
*
* @param title the chart title (<code>null</code> permitted).
* @param dataset the dataset (<code>null</code> permitted).
* @param legend legend required?
* @param tooltips tooltips required?
* @param urls URLs required?
*
* @return A chart.
*/
public static JFreeChart createPolarChart(String title, XYDataset dataset,
boolean legend, boolean tooltips, boolean urls) {
PolarPlot plot = new PolarPlot();
plot.setDataset(dataset);
NumberAxis rangeAxis = new NumberAxis();
rangeAxis.setAxisLineVisible(false);
rangeAxis.setTickMarksVisible(false);
rangeAxis.setTickLabelInsets(new RectangleInsets(0.0, 0.0, 0.0, 0.0));
plot.setAxis(rangeAxis);
plot.setRenderer(new DefaultPolarItemRenderer());
JFreeChart chart = new JFreeChart(
title, JFreeChart.DEFAULT_TITLE_FONT, plot, legend);
currentTheme.apply(chart);
return chart;
}
Example 9
| Source File: ChartFactory.java From ECG-Viewer with GNU General Public License v2.0 | 6 votes |
|
/**
* Creates a polar plot for the specified dataset (x-values interpreted as
* angles in degrees). The chart object returned by this method uses a
* {@link PolarPlot} instance as the plot, with a {@link NumberAxis} for
* the radial axis.
*
* @param title the chart title (<code>null</code> permitted).
* @param dataset the dataset (<code>null</code> permitted).
* @param legend legend required?
* @param tooltips tooltips required?
* @param urls URLs required?
*
* @return A chart.
*/
public static JFreeChart createPolarChart(String title, XYDataset dataset,
boolean legend, boolean tooltips, boolean urls) {
PolarPlot plot = new PolarPlot();
plot.setDataset(dataset);
NumberAxis rangeAxis = new NumberAxis();
rangeAxis.setAxisLineVisible(false);
rangeAxis.setTickMarksVisible(false);
rangeAxis.setTickLabelInsets(new RectangleInsets(0.0, 0.0, 0.0, 0.0));
plot.setAxis(rangeAxis);
plot.setRenderer(new DefaultPolarItemRenderer());
JFreeChart chart = new JFreeChart(
title, JFreeChart.DEFAULT_TITLE_FONT, plot, legend);
currentTheme.apply(chart);
return chart;
}
Example 10
| Source File: SpectrumChartFactory.java From mzmine2 with GNU General Public License v2.0 | 4 votes |
|
public static EChartPanel createMirrorChartPanel(String labelA, double precursorMZA, double rtA,
DataPoint[] dpsA, String labelB, double precursorMZB, double rtB, DataPoint[] dpsB,
boolean showTitle, boolean showLegend) {
PseudoSpectrumDataSet data =
dpsA == null ? null : createMSMSDataSet(precursorMZA, rtA, dpsA, labelA);
PseudoSpectrumDataSet dataMirror =
dpsB == null ? null : createMSMSDataSet(precursorMZB, rtB, dpsB, labelB);
NumberFormat mzForm = MZmineCore.getConfiguration().getMZFormat();
NumberFormat intensityFormat = new DecimalFormat("0.#");
// set the X axis (retention time) properties
NumberAxis xAxis = new NumberAxis("m/z");
xAxis.setNumberFormatOverride(mzForm);
xAxis.setUpperMargin(0.08);
xAxis.setLowerMargin(0.00);
xAxis.setTickLabelInsets(new RectangleInsets(0, 0, 20, 20));
xAxis.setAutoRangeIncludesZero(false);
xAxis.setMinorTickCount(5);
PseudoSpectraRenderer renderer1 = new PseudoSpectraRenderer(Color.BLACK, false);
PseudoSpectraRenderer renderer2 = new PseudoSpectraRenderer(Color.BLACK, false);
// create subplot 1...
final NumberAxis rangeAxis1 = new NumberAxis("rel. intensity [%]");
final XYPlot subplot1 = new XYPlot(data, null, rangeAxis1, renderer1);
subplot1.setRangeAxisLocation(AxisLocation.BOTTOM_OR_LEFT);
rangeAxis1.setNumberFormatOverride(intensityFormat);
rangeAxis1.setAutoRangeIncludesZero(true);
rangeAxis1.setAutoRangeStickyZero(true);
// create subplot 2...
final NumberAxis rangeAxis2 = new NumberAxis("rel. intensity [%]");
rangeAxis2.setNumberFormatOverride(intensityFormat);
rangeAxis2.setAutoRangeIncludesZero(true);
rangeAxis2.setAutoRangeStickyZero(true);
rangeAxis2.setInverted(true);
final XYPlot subplot2 = new XYPlot(dataMirror, null, rangeAxis2, renderer2);
subplot2.setRangeAxisLocation(AxisLocation.TOP_OR_LEFT);
// parent plot...
final CombinedDomainXYPlot plot = new CombinedDomainXYPlot(new NumberAxis("Domain"));
plot.setGap(0);
// add the subplots...
plot.add(subplot1, 1);
plot.add(subplot2, 1);
plot.setOrientation(PlotOrientation.VERTICAL);
// set the plot properties
plot.setBackgroundPaint(Color.white);
plot.setAxisOffset(RectangleInsets.ZERO_INSETS);
// set rendering order
plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);
// set crosshair (selection) properties
plot.setDomainCrosshairVisible(false);
plot.setRangeCrosshairVisible(false);
// return a new chart containing the overlaid plot...
JFreeChart chart = new JFreeChart("", JFreeChart.DEFAULT_TITLE_FONT, plot, true);
chart.setBackgroundPaint(Color.white);
chart.getTitle().setVisible(false);
// chart.getXYPlot().setRangeZeroBaselineVisible(true);
chart.getTitle().setVisible(showTitle);
chart.getLegend().setVisible(showLegend);
return new EChartPanel(chart);
}
Example 11
| Source File: PseudoSpectrum.java From mzmine2 with GNU General Public License v2.0 | 4 votes |
|
public static JFreeChart createChart(PseudoSpectrumDataSet dataset, RawDataFile raw, boolean sum,
String title) {
//
JFreeChart chart = ChartFactory.createXYLineChart(title, // title
"m/z", // x-axis label
"Intensity", // y-axis label
dataset, // data set
PlotOrientation.VERTICAL, // orientation
true, // isotopeFlag, // create legend?
true, // generate tooltips?
false // generate URLs?
);
chart.setBackgroundPaint(Color.white);
chart.getTitle().setVisible(false);
// set the plot properties
XYPlot plot = chart.getXYPlot();
plot.setBackgroundPaint(Color.white);
plot.setAxisOffset(RectangleInsets.ZERO_INSETS);
// set rendering order
plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);
// set crosshair (selection) properties
plot.setDomainCrosshairVisible(false);
plot.setRangeCrosshairVisible(false);
NumberFormat mzFormat = MZmineCore.getConfiguration().getMZFormat();
NumberFormat intensityFormat = MZmineCore.getConfiguration().getIntensityFormat();
// set the X axis (retention time) properties
NumberAxis xAxis = (NumberAxis) plot.getDomainAxis();
xAxis.setNumberFormatOverride(mzFormat);
xAxis.setUpperMargin(0.08);
xAxis.setLowerMargin(0.00);
xAxis.setTickLabelInsets(new RectangleInsets(0, 0, 20, 20));
xAxis.setAutoRangeIncludesZero(true);
xAxis.setMinorTickCount(5);
// set the Y axis (intensity) properties
NumberAxis yAxis = (NumberAxis) plot.getRangeAxis();
yAxis.setNumberFormatOverride(intensityFormat);
yAxis.setUpperMargin(0.20);
PseudoSpectraRenderer renderer = new PseudoSpectraRenderer(Color.BLACK, false);
plot.setRenderer(0, renderer);
plot.setRenderer(1, renderer);
plot.setRenderer(2, renderer);
renderer.setSeriesVisibleInLegend(1, false);
renderer.setSeriesPaint(2, Color.ORANGE);
//
return chart;
}
Example 12
| Source File: SpectrumChartFactory.java From mzmine2 with GNU General Public License v2.0 | 4 votes |
|
public static JFreeChart createChart(PseudoSpectrumDataSet dataset, boolean showTitle,
boolean showLegend, double rt, double precursorMZ) {
//
if (dataset == null)
return null;
//
NumberFormat mzForm = MZmineCore.getConfiguration().getMZFormat();
NumberFormat rtForm = MZmineCore.getConfiguration().getRTFormat();
NumberFormat intensityFormat = MZmineCore.getConfiguration().getIntensityFormat();
String title = "";
if (precursorMZ == 0)
title = "RT=" + mzForm.format(precursorMZ);
else
title = MessageFormat.format("MSMS for m/z={0} RT={1}", mzForm.format(precursorMZ),
rtForm.format(rt));
JFreeChart chart = ChartFactory.createXYLineChart(title, // title
"m/z", // x-axis label
"Intensity", // y-axis label
dataset, // data set
PlotOrientation.VERTICAL, // orientation
true, // isotopeFlag, // create legend?
true, // generate tooltips?
false // generate URLs?
);
chart.setBackgroundPaint(Color.white);
chart.getTitle().setVisible(false);
// set the plot properties
XYPlot plot = chart.getXYPlot();
plot.setBackgroundPaint(Color.white);
plot.setAxisOffset(RectangleInsets.ZERO_INSETS);
// set rendering order
plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);
// set crosshair (selection) properties
plot.setDomainCrosshairVisible(false);
plot.setRangeCrosshairVisible(false);
// set the X axis (retention time) properties
NumberAxis xAxis = (NumberAxis) plot.getDomainAxis();
xAxis.setNumberFormatOverride(mzForm);
xAxis.setUpperMargin(0.08);
xAxis.setLowerMargin(0.00);
xAxis.setTickLabelInsets(new RectangleInsets(0, 0, 20, 20));
xAxis.setAutoRangeIncludesZero(true);
xAxis.setMinorTickCount(5);
// set the Y axis (intensity) properties
NumberAxis yAxis = (NumberAxis) plot.getRangeAxis();
yAxis.setNumberFormatOverride(intensityFormat);
yAxis.setUpperMargin(0.20);
PseudoSpectraRenderer renderer = new PseudoSpectraRenderer(Color.BLACK, false);
plot.setRenderer(0, renderer);
plot.setRenderer(1, renderer);
plot.setRenderer(2, renderer);
renderer.setSeriesVisibleInLegend(1, false);
renderer.setSeriesPaint(2, Color.ORANGE);
//
chart.getTitle().setVisible(showTitle);
chart.getLegend().setVisible(showLegend);
//
if (precursorMZ != 0)
addPrecursorMarker(chart, precursorMZ);
return chart;
}
Example 13
| Source File: ChromatogramPlotWindowController.java From old-mzmine3 with GNU General Public License v2.0 | 4 votes |
|
@FXML
public void initialize() {
final JFreeChart chart = chartNode.getChart();
final XYPlot plot = chart.getXYPlot();
// Do not set colors and strokes dynamically. They are instead provided
// by the dataset and configured in configureRenderer()
plot.setDrawingSupplier(null);
plot.setDomainGridlinePaint(JavaFXUtil.convertColorToAWT(gridColor));
plot.setRangeGridlinePaint(JavaFXUtil.convertColorToAWT(gridColor));
plot.setBackgroundPaint(JavaFXUtil.convertColorToAWT(backgroundColor));
plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);
plot.setDomainCrosshairPaint(JavaFXUtil.convertColorToAWT(crossHairColor));
plot.setRangeCrosshairPaint(JavaFXUtil.convertColorToAWT(crossHairColor));
plot.setDomainCrosshairVisible(true);
plot.setRangeCrosshairVisible(true);
// chart properties
chart.setBackgroundPaint(JavaFXUtil.convertColorToAWT(backgroundColor));
// legend properties
LegendTitle legend = chart.getLegend();
// legend.setItemFont(legendFont);
legend.setFrame(BlockBorder.NONE);
// set the X axis (retention time) properties
NumberAxis xAxis = (NumberAxis) plot.getDomainAxis();
xAxis.setLabel("Retention time (min)");
xAxis.setUpperMargin(0.03);
xAxis.setLowerMargin(0.03);
xAxis.setRangeType(RangeType.POSITIVE);
xAxis.setTickLabelInsets(new RectangleInsets(0, 0, 20, 20));
// set the Y axis (intensity) properties
NumberAxis yAxis = (NumberAxis) plot.getRangeAxis();
yAxis.setLabel("Intensity");
yAxis.setRangeType(RangeType.POSITIVE);
yAxis.setAutoRangeIncludesZero(true);
// set the fixed number formats, because otherwise JFreeChart sometimes
// shows exponent, sometimes it doesn't
DecimalFormat mzFormat = MZmineCore.getConfiguration().getMZFormat();
xAxis.setNumberFormatOverride(mzFormat);
DecimalFormat intensityFormat = MZmineCore.getConfiguration().getIntensityFormat();
yAxis.setNumberFormatOverride(intensityFormat);
chartTitle = chartNode.getChart().getTitle();
chartTitle.setMargin(5, 0, 0, 0);
chartTitle.setFont(titleFont);
chartTitle.setText("Chromatogram");
chartNode.setCursor(Cursor.CROSSHAIR);
// Remove the dataset if it is removed from the list
datasets.addListener((Change<? extends ChromatogramPlotDataSet> c) -> {
while (c.next()) {
if (c.wasRemoved()) {
for (ChromatogramPlotDataSet ds : c.getRemoved()) {
int index = plot.indexOf(ds);
plot.setDataset(index, null);
}
}
}
});
itemLabelsVisible.addListener((prop, oldVal, newVal) -> {
for (ChromatogramPlotDataSet dataset : datasets) {
int datasetIndex = plot.indexOf(dataset);
XYItemRenderer renderer = plot.getRenderer(datasetIndex);
renderer.setBaseItemLabelsVisible(newVal);
}
});
legendVisible.addListener((prop, oldVal, newVal) -> {
legend.setVisible(newVal);
});
}
Example 14
| Source File: MsSpectrumPlotWindowController.java From old-mzmine3 with GNU General Public License v2.0 | 4 votes |
|
public void initialize() {
final JFreeChart chart = chartNode.getChart();
final XYPlot plot = chart.getXYPlot();
// Do not set colors and strokes dynamically. They are instead provided
// by the dataset and configured in configureRenderer()
plot.setDrawingSupplier(null);
plot.setDomainGridlinePaint(JavaFXUtil.convertColorToAWT(gridColor));
plot.setRangeGridlinePaint(JavaFXUtil.convertColorToAWT(gridColor));
plot.setBackgroundPaint(JavaFXUtil.convertColorToAWT(backgroundColor));
plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);
plot.setDomainCrosshairVisible(false);
plot.setRangeCrosshairVisible(false);
// chart properties
chart.setBackgroundPaint(JavaFXUtil.convertColorToAWT(backgroundColor));
// legend properties
LegendTitle legend = chart.getLegend();
// legend.setItemFont(legendFont);
legend.setFrame(BlockBorder.NONE);
// set the X axis (m/z) properties
NumberAxis xAxis = (NumberAxis) plot.getDomainAxis();
xAxis.setLabel("m/z");
xAxis.setUpperMargin(0.03);
xAxis.setLowerMargin(0.03);
xAxis.setRangeType(RangeType.POSITIVE);
xAxis.setTickLabelInsets(new RectangleInsets(0, 0, 20, 20));
// set the Y axis (intensity) properties
NumberAxis yAxis = (NumberAxis) plot.getRangeAxis();
yAxis.setLabel("Intensity");
yAxis.setRangeType(RangeType.POSITIVE);
yAxis.setAutoRangeIncludesZero(true);
// set the fixed number formats, because otherwise JFreeChart sometimes
// shows exponent, sometimes it doesn't
DecimalFormat mzFormat = MZmineCore.getConfiguration().getMZFormat();
xAxis.setNumberFormatOverride(mzFormat);
DecimalFormat intensityFormat = MZmineCore.getConfiguration().getIntensityFormat();
yAxis.setNumberFormatOverride(intensityFormat);
chartTitle = chartNode.getChart().getTitle();
chartTitle.setMargin(5, 0, 0, 0);
chartTitle.setFont(titleFont);
chartNode.setCursor(Cursor.CROSSHAIR);
// Remove the dataset if it is removed from the list
datasets.addListener((Change<? extends MsSpectrumDataSet> c) -> {
while (c.next()) {
if (c.wasRemoved()) {
for (MsSpectrumDataSet ds : c.getRemoved()) {
int index = plot.indexOf(ds);
plot.setDataset(index, null);
}
}
}
});
itemLabelsVisible.addListener((prop, oldVal, newVal) -> {
for (MsSpectrumDataSet dataset : datasets) {
int datasetIndex = plot.indexOf(dataset);
XYItemRenderer renderer = plot.getRenderer(datasetIndex);
renderer.setBaseItemLabelsVisible(newVal);
}
});
legendVisible.addListener((prop, oldVal, newVal) -> {
legend.setVisible(newVal);
});
}
Example 15
| Source File: MirrorChartFactory.java From mzmine3 with GNU General Public License v2.0 | 4 votes |
|
private static JFreeChart createMirrorChart(String labelA, double precursorMZA, double rtA,
DataPoint[] dpsA, String labelB, double precursorMZB, double rtB, DataPoint[] dpsB,
boolean showTitle, boolean showLegend) {
PseudoSpectrumDataSet data =
dpsA == null ? null : createMSMSDataSet(precursorMZA, rtA, dpsA, labelA);
PseudoSpectrumDataSet dataMirror =
dpsB == null ? null : createMSMSDataSet(precursorMZB, rtB, dpsB, labelB);
NumberFormat mzForm = MZmineCore.getConfiguration().getMZFormat();
NumberFormat intensityFormat = new DecimalFormat("0.#");
// set the X axis (retention time) properties
NumberAxis xAxis = new NumberAxis("m/z");
xAxis.setNumberFormatOverride(mzForm);
xAxis.setUpperMargin(0.08);
xAxis.setLowerMargin(0.00);
xAxis.setTickLabelInsets(new RectangleInsets(0, 0, 20, 20));
xAxis.setAutoRangeIncludesZero(false);
xAxis.setMinorTickCount(5);
PseudoSpectraRenderer renderer1 = new PseudoSpectraRenderer(Color.BLACK, false);
PseudoSpectraRenderer renderer2 = new PseudoSpectraRenderer(Color.BLACK, false);
// create subplot 1...
final NumberAxis rangeAxis1 = new NumberAxis("rel. intensity [%]");
final XYPlot subplot1 = new XYPlot(data, null, rangeAxis1, renderer1);
subplot1.setRangeAxisLocation(AxisLocation.BOTTOM_OR_LEFT);
rangeAxis1.setNumberFormatOverride(intensityFormat);
rangeAxis1.setAutoRangeIncludesZero(true);
rangeAxis1.setAutoRangeStickyZero(true);
// create subplot 2...
final NumberAxis rangeAxis2 = new NumberAxis("rel. intensity [%]");
rangeAxis2.setNumberFormatOverride(intensityFormat);
rangeAxis2.setAutoRangeIncludesZero(true);
rangeAxis2.setAutoRangeStickyZero(true);
rangeAxis2.setInverted(true);
final XYPlot subplot2 = new XYPlot(dataMirror, null, rangeAxis2, renderer2);
subplot2.setRangeAxisLocation(AxisLocation.TOP_OR_LEFT);
// parent plot...
final CombinedDomainXYPlot plot = new CombinedDomainXYPlot(xAxis);
plot.setGap(0);
// add the subplots...
plot.add(subplot1, 1);
plot.add(subplot2, 1);
plot.setOrientation(PlotOrientation.VERTICAL);
// set the plot properties
plot.setBackgroundPaint(Color.white);
plot.setAxisOffset(RectangleInsets.ZERO_INSETS);
// set rendering order
plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);
// set crosshair (selection) properties
plot.setDomainCrosshairVisible(false);
plot.setRangeCrosshairVisible(false);
// return a new chart containing the overlaid plot...
JFreeChart chart = new JFreeChart("", JFreeChart.DEFAULT_TITLE_FONT, plot, true);
chart.setBackgroundPaint(Color.white);
chart.getTitle().setVisible(false);
chart.getXYPlot().setRangeZeroBaselineVisible(true);
chart.getTitle().setVisible(showTitle);
chart.getLegend().setVisible(showLegend);
return chart;
}
Example 16
| Source File: PseudoSpectrum.java From mzmine3 with GNU General Public License v2.0 | 4 votes |
|
public static JFreeChart createChart(PseudoSpectrumDataSet dataset, RawDataFile raw, boolean sum,
String title) {
//
JFreeChart chart = ChartFactory.createXYLineChart(title, // title
"m/z", // x-axis label
"Intensity", // y-axis label
dataset, // data set
PlotOrientation.VERTICAL, // orientation
true, // isotopeFlag, // create legend?
true, // generate tooltips?
false // generate URLs?
);
chart.setBackgroundPaint(Color.white);
chart.getTitle().setVisible(false);
// set the plot properties
XYPlot plot = chart.getXYPlot();
plot.setBackgroundPaint(Color.white);
plot.setAxisOffset(RectangleInsets.ZERO_INSETS);
// set rendering order
plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);
// set crosshair (selection) properties
plot.setDomainCrosshairVisible(false);
plot.setRangeCrosshairVisible(false);
NumberFormat mzFormat = MZmineCore.getConfiguration().getMZFormat();
NumberFormat intensityFormat = MZmineCore.getConfiguration().getIntensityFormat();
// set the X axis (retention time) properties
NumberAxis xAxis = (NumberAxis) plot.getDomainAxis();
xAxis.setNumberFormatOverride(mzFormat);
xAxis.setUpperMargin(0.08);
xAxis.setLowerMargin(0.00);
xAxis.setTickLabelInsets(new RectangleInsets(0, 0, 20, 20));
xAxis.setAutoRangeIncludesZero(true);
xAxis.setMinorTickCount(5);
// set the Y axis (intensity) properties
NumberAxis yAxis = (NumberAxis) plot.getRangeAxis();
yAxis.setNumberFormatOverride(intensityFormat);
yAxis.setUpperMargin(0.20);
PseudoSpectraRenderer renderer = new PseudoSpectraRenderer(Color.BLACK, false);
plot.setRenderer(0, renderer);
plot.setRenderer(1, renderer);
plot.setRenderer(2, renderer);
renderer.setSeriesVisibleInLegend(1, false);
renderer.setSeriesPaint(2, Color.ORANGE);
//
return chart;
}
Example 17
| Source File: SpectrumChartFactory.java From mzmine3 with GNU General Public License v2.0 | 4 votes |
|
public static JFreeChart createChart(PseudoSpectrumDataSet dataset, boolean showTitle,
boolean showLegend, double rt, double precursorMZ) {
//
if (dataset == null)
return null;
//
NumberFormat mzForm = MZmineCore.getConfiguration().getMZFormat();
NumberFormat rtForm = MZmineCore.getConfiguration().getRTFormat();
NumberFormat intensityFormat = MZmineCore.getConfiguration().getIntensityFormat();
String title = "";
if (precursorMZ == 0)
title = "RT=" + mzForm.format(precursorMZ);
else
title = MessageFormat.format("MSMS for m/z={0} RT={1}", mzForm.format(precursorMZ),
rtForm.format(rt));
JFreeChart chart = ChartFactory.createXYLineChart(title, // title
"m/z", // x-axis label
"Intensity", // y-axis label
dataset, // data set
PlotOrientation.VERTICAL, // orientation
true, // isotopeFlag, // create legend?
true, // generate tooltips?
false // generate URLs?
);
chart.setBackgroundPaint(Color.white);
chart.getTitle().setVisible(false);
// set the plot properties
XYPlot plot = chart.getXYPlot();
plot.setBackgroundPaint(Color.white);
plot.setAxisOffset(RectangleInsets.ZERO_INSETS);
// set rendering order
plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);
// set crosshair (selection) properties
plot.setDomainCrosshairVisible(false);
plot.setRangeCrosshairVisible(false);
// set the X axis (retention time) properties
NumberAxis xAxis = (NumberAxis) plot.getDomainAxis();
xAxis.setNumberFormatOverride(mzForm);
xAxis.setUpperMargin(0.08);
xAxis.setLowerMargin(0.00);
xAxis.setTickLabelInsets(new RectangleInsets(0, 0, 20, 20));
xAxis.setAutoRangeIncludesZero(true);
xAxis.setMinorTickCount(5);
// set the Y axis (intensity) properties
NumberAxis yAxis = (NumberAxis) plot.getRangeAxis();
yAxis.setNumberFormatOverride(intensityFormat);
yAxis.setUpperMargin(0.20);
PseudoSpectraRenderer renderer = new PseudoSpectraRenderer(Color.BLACK, false);
plot.setRenderer(0, renderer);
plot.setRenderer(1, renderer);
plot.setRenderer(2, renderer);
renderer.setSeriesVisibleInLegend(1, false);
renderer.setSeriesPaint(2, Color.ORANGE);
//
chart.getTitle().setVisible(showTitle);
chart.getLegend().setVisible(showLegend);
//
if (precursorMZ != 0)
addPrecursorMarker(chart, precursorMZ);
return chart;
}
