org.jpmml.converter.ValueUtil Java Examples

The following examples show how to use org.jpmml.converter.ValueUtil. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example. You may check out the related API usage on the sidebar.
Example #1
Source File: FormulaUtil.java    From jpmml-r with GNU Affero General Public License v3.0 6 votes vote down vote up
static
private List<String> parseVector(FunctionExpression.Argument argument){
	List<String> result = new ArrayList<>();

	FunctionExpression vectorExpression = toVectorExpression(argument);

	List<FunctionExpression.Argument> objectArguments = vectorExpression.getArguments();
	for(FunctionExpression.Argument objectArgument : objectArguments){
		Constant constant = (Constant)objectArgument.getExpression();

		String string = ValueUtil.asString(constant.getValue());

		result.add(string);
	}

	return result;
}
 
Example #2
Source File: RangerConverter.java    From jpmml-r with GNU Affero General Public License v3.0 6 votes vote down vote up
private List<TreeModel> encodeForest(RGenericVector forest, MiningFunction miningFunction, ScoreEncoder scoreEncoder, Schema schema){
	RNumberVector<?> numTrees = forest.getNumericElement("num.trees");
	RGenericVector childNodeIDs = forest.getGenericElement("child.nodeIDs");
	RGenericVector splitVarIDs = forest.getGenericElement("split.varIDs");
	RGenericVector splitValues = forest.getGenericElement("split.values");
	RGenericVector terminalClassCounts = forest.getGenericElement("terminal.class.counts", false);

	Schema segmentSchema = schema.toAnonymousSchema();

	List<TreeModel> treeModels = new ArrayList<>();

	for(int i = 0; i < ValueUtil.asInt(numTrees.asScalar()); i++){
		TreeModel treeModel = encodeTreeModel(miningFunction, scoreEncoder, (RGenericVector)childNodeIDs.getValue(i), (RNumberVector<?>)splitVarIDs.getValue(i), (RNumberVector<?>)splitValues.getValue(i), (terminalClassCounts != null ? (RGenericVector)terminalClassCounts.getValue(i) : null), segmentSchema);

		treeModels.add(treeModel);
	}

	return treeModels;
}
 
Example #3
Source File: OrdinalEncoder.java    From jpmml-sklearn with GNU Affero General Public License v3.0 6 votes vote down vote up
static
public Map<Object, Integer> getCategoryMapping(Mapping mapping){
	SingleBlockManager mappingData = (mapping.getMapping(Series.class)).getData();

	Index blockItem = mappingData.getOnlyBlockItem();
	List<?> categories = (blockItem.getData()).getData();

	HasArray blockValue = mappingData.getOnlyBlockValue();
	List<Integer> indices = ValueUtil.asIntegers((List)blockValue.getArrayContent());

	ClassDictUtil.checkSize(categories, indices);

	Map<Object, Integer> result = new LinkedHashMap<>();

	for(int i = 0; i < categories.size(); i++){
		result.put(categories.get(i), indices.get(i));
	}

	return result;
}
 
Example #4
Source File: RPartConverter.java    From jpmml-r with GNU Affero General Public License v3.0 6 votes vote down vote up
public RPartConverter(RGenericVector rpart){
	super(rpart);

	RGenericVector control = rpart.getGenericElement("control");

	RNumberVector<?> useSurrogate = control.getNumericElement("usesurrogate");

	this.useSurrogate = ValueUtil.asInt(useSurrogate.asScalar());

	switch(this.useSurrogate){
		case 0:
		case 1:
		case 2:
			break;
		default:
			throw new IllegalArgumentException();
	}
}
 
Example #5
Source File: RegressionTree.java    From pyramid with Apache License 2.0 5 votes vote down vote up
static
private Predicate encodePredicate(Feature feature, Node node, boolean left){
    FieldName name = feature.getName();
    SimplePredicate.Operator operator;
    String value;

    if(feature instanceof BinaryFeature){
        BinaryFeature binaryFeature = (BinaryFeature)feature;

        operator = (left ? SimplePredicate.Operator.NOT_EQUAL : SimplePredicate.Operator.EQUAL);
        value = binaryFeature.getValue();
    } else

    {
        ContinuousFeature continuousFeature = feature.toContinuousFeature();

        Number splitValue = node.getThreshold();

        DataType dataType = continuousFeature.getDataType();
        switch(dataType){
            case INTEGER:
                splitValue = (int)(splitValue.floatValue() + 1f);
                break;
            case FLOAT:
                break;
            default:
                throw new IllegalArgumentException();
        }

        operator = (left ? SimplePredicate.Operator.LESS_OR_EQUAL : SimplePredicate.Operator.GREATER_THAN);
        value = ValueUtil.formatValue(splitValue);
    }

    SimplePredicate simplePredicate = new SimplePredicate(name, operator)
            .setValue(value);

    return simplePredicate;
}
 
Example #6
Source File: SVMConverter.java    From jpmml-r with GNU Affero General Public License v3.0 5 votes vote down vote up
private void encodeFormula(RExpEncoder encoder){
	RGenericVector svm = getObject();

	RDoubleVector type = svm.getDoubleElement("type");
	RDoubleVector sv = svm.getDoubleElement("SV");
	RVector<?> levels = svm.getVectorElement("levels");
	RExp terms = svm.getElement("terms");
	RGenericVector xlevels = DecorationUtil.getGenericElement(svm, "xlevels");

	Type svmType = Type.values()[ValueUtil.asInt(type.asScalar())];

	RStringVector rowNames = sv.dimnames(0);
	RStringVector columnNames = sv.dimnames(1);

	FormulaContext context = new XLevelsFormulaContext(xlevels);

	Formula formula = FormulaUtil.createFormula(terms, context, encoder);

	switch(svmType){
		case C_CLASSIFICATION:
		case NU_CLASSIFICATION:
			FormulaUtil.setLabel(formula, terms, levels, encoder);
			break;
		case ONE_CLASSIFICATION:
			encoder.setLabel(new ContinuousLabel(null, DataType.DOUBLE));
			break;
		case EPS_REGRESSION:
		case NU_REGRESSION:
			FormulaUtil.setLabel(formula, terms, null, encoder);
			break;
	}

	FormulaUtil.addFeatures(formula, columnNames, true, encoder);

	scaleFeatures(encoder);
}
 
Example #7
Source File: LightGBMUtil.java    From jpmml-lightgbm with GNU Affero General Public License v3.0 5 votes vote down vote up
@Override
public Integer apply(String string){

	try {
		return Integer.valueOf(string);
	} catch(NumberFormatException nfe){
		return ValueUtil.asInteger(Double.valueOf(string));
	}
}
 
Example #8
Source File: DiscreteDomain.java    From jpmml-sklearn with GNU Affero General Public License v3.0 5 votes vote down vote up
static
public DiscrStats createDiscrStats(DataType dataType, Object[] objects){
	List<Object> values = (List)asArray(objects[0]);
	List<Integer> counts = ValueUtil.asIntegers((List)asArray(objects[1]));

	ClassDictUtil.checkSize(values, counts);

	DiscrStats discrStats = new DiscrStats()
		.addArrays(PMMLUtil.createStringArray(standardizeValues(dataType, values)), PMMLUtil.createIntArray(counts));

	return discrStats;
}
 
Example #9
Source File: MVRConverter.java    From jpmml-r with GNU Affero General Public License v3.0 5 votes vote down vote up
@Override
public GeneralRegressionModel encodeModel(Schema schema){
	RGenericVector mvr = getObject();

	RDoubleVector coefficients = mvr.getDoubleElement("coefficients");
	RDoubleVector xMeans = mvr.getDoubleElement("Xmeans");
	RDoubleVector yMeans = mvr.getDoubleElement("Ymeans");
	RNumberVector<?> ncomp = mvr.getNumericElement("ncomp");

	RStringVector rowNames = coefficients.dimnames(0);
	RStringVector columnNames = coefficients.dimnames(1);
	RStringVector compNames = coefficients.dimnames(2);

	int rows = rowNames.size();
	int columns = columnNames.size();
	int components = compNames.size();

	List<? extends Feature> features = schema.getFeatures();

	List<Double> featureCoefficients = FortranMatrixUtil.getColumn(coefficients.getValues(), rows, (columns * components), 0 + (ValueUtil.asInt(ncomp.asScalar()) - 1));

	Double intercept = yMeans.getValue(0);

	for(int j = 0; j < rowNames.size(); j++){
		intercept -= (featureCoefficients.get(j) * xMeans.getValue(j));
	}

	GeneralRegressionModel generalRegressionModel = new GeneralRegressionModel(GeneralRegressionModel.ModelType.GENERALIZED_LINEAR, MiningFunction.REGRESSION, ModelUtil.createMiningSchema(schema.getLabel()), null, null, null)
		.setLinkFunction(GeneralRegressionModel.LinkFunction.IDENTITY);

	GeneralRegressionModelUtil.encodeRegressionTable(generalRegressionModel, features, featureCoefficients, intercept, null);

	return generalRegressionModel;
}
 
Example #10
Source File: MVRConverter.java    From jpmml-r with GNU Affero General Public License v3.0 5 votes vote down vote up
private void scaleFeatures(RExpEncoder encoder){
	RGenericVector mvr = getObject();

	RDoubleVector scale = mvr.getDoubleElement("scale", false);
	if(scale == null){
		return;
	}

	List<Feature> features = encoder.getFeatures();

	if(scale.size() != features.size()){
		throw new IllegalArgumentException();
	}

	for(int i = 0; i < features.size(); i++){
		Feature feature = features.get(i);
		Double factor = scale.getValue(i);

		if(ValueUtil.isOne(factor)){
			continue;
		}

		ContinuousFeature continuousFeature = feature.toContinuousFeature();

		Apply apply = PMMLUtil.createApply(PMMLFunctions.DIVIDE, continuousFeature.ref(), PMMLUtil.createConstant(factor));

		DerivedField derivedField = encoder.createDerivedField(FeatureUtil.createName("scale", feature), OpType.CONTINUOUS, DataType.DOUBLE, apply);

		features.set(i, new ContinuousFeature(encoder, derivedField));
	}
}
 
Example #11
Source File: PreProcessEncoder.java    From jpmml-r with GNU Affero General Public License v3.0 5 votes vote down vote up
private Expression encodeExpression(FieldName name, Expression expression){
	List<Double> ranges = this.ranges.get(name);
	if(ranges != null){
		Double min = ranges.get(0);
		Double max = ranges.get(1);

		if(!ValueUtil.isZero(min)){
			expression = PMMLUtil.createApply(PMMLFunctions.SUBTRACT, expression, PMMLUtil.createConstant(min));
		} // End if

		if(!ValueUtil.isOne(max - min)){
			expression = PMMLUtil.createApply(PMMLFunctions.DIVIDE, expression, PMMLUtil.createConstant(max - min));
		}
	}

	Double mean = this.mean.get(name);
	if(mean != null && !ValueUtil.isZero(mean)){
		expression = PMMLUtil.createApply(PMMLFunctions.SUBTRACT, expression, PMMLUtil.createConstant(mean));
	}

	Double std = this.std.get(name);
	if(std != null && !ValueUtil.isOne(std)){
		expression = PMMLUtil.createApply(PMMLFunctions.DIVIDE, expression, PMMLUtil.createConstant(std));
	}

	Double median = this.median.get(name);
	if(median != null){
		expression = PMMLUtil.createApply(PMMLFunctions.IF)
			.addExpressions(PMMLUtil.createApply(PMMLFunctions.ISNOTMISSING, new FieldRef(name)))
			.addExpressions(expression, PMMLUtil.createConstant(median));
	}

	return expression;
}
 
Example #12
Source File: Formula.java    From jpmml-r with GNU Affero General Public License v3.0 5 votes vote down vote up
public void addField(Field<?> field){
	RExpEncoder encoder = getEncoder();

	Feature feature = new ContinuousFeature(encoder, field);

	if(field instanceof DerivedField){
		DerivedField derivedField = (DerivedField)field;

		Expression expression = derivedField.getExpression();
		if(expression instanceof Apply){
			Apply apply = (Apply)expression;

			if(checkApply(apply, PMMLFunctions.POW, FieldRef.class, Constant.class)){
				List<Expression> expressions = apply.getExpressions();

				FieldRef fieldRef = (FieldRef)expressions.get(0);
				Constant constant = (Constant)expressions.get(1);

				try {
					String string = ValueUtil.asString(constant.getValue());

					int power = Integer.parseInt(string);

					feature = new PowerFeature(encoder, fieldRef.getField(), DataType.DOUBLE, power);
				} catch(NumberFormatException nfe){
					// Ignored
				}
			}
		}
	}

	putFeature(field.getName(), feature);

	this.fields.add(field);
}
 
Example #13
Source File: EnsembleUtil.java    From jpmml-sklearn with GNU Affero General Public License v3.0 5 votes vote down vote up
static
public List<List<Integer>> transformEstimatorsFeatures(List<? extends HasArray> estimatorsFeatures){
	Function<HasArray, List<Integer>> function = new Function<HasArray, List<Integer>>(){

		@Override
		public List<Integer> apply(HasArray hasArray){
			return ValueUtil.asIntegers((List)hasArray.getArrayContent());
		}
	};

	return Lists.transform(estimatorsFeatures, function);
}
 
Example #14
Source File: RegTree.java    From jpmml-xgboost with GNU Affero General Public License v3.0 5 votes vote down vote up
public boolean isEmpty(){
	Node node = this.nodes[0];

	if(!node.is_leaf()){
		return false;
	} else

	{
		Float value = node.leaf_value();

		return ValueUtil.isZero(value);
	}
}
 
Example #15
Source File: MiningModelUtil.java    From pyramid with Apache License 2.0 5 votes vote down vote up
static
public Segmentation createSegmentation(Segmentation.MultipleModelMethod multipleModelMethod, List<? extends Model> models, List<? extends Number> weights){

    if((weights != null) && (models.size() != weights.size())){
        throw new IllegalArgumentException();
    }

    List<Segment> segments = new ArrayList<>();

    for(int i = 0; i < models.size(); i++){
        Model model = models.get(i);
        Number weight = (weights != null ? weights.get(i) : null);

        Segment segment = new Segment()
                .setId(String.valueOf(i + 1))
                .setPredicate(new True())
                .setModel(model);

        if(weight != null && !ValueUtil.isOne(weight)){
            segment.setWeight(ValueUtil.asDouble(weight));
        }

        segments.add(segment);
    }

    return new Segmentation(multipleModelMethod, segments);
}
 
Example #16
Source File: XGBoostConverter.java    From jpmml-r with GNU Affero General Public License v3.0 4 votes vote down vote up
@Override
public void encodeSchema(RExpEncoder encoder){
	RGenericVector booster = getObject();

	RStringVector featureNames = booster.getStringElement("feature_names", false);
	RGenericVector schema = booster.getGenericElement("schema", false);

	FeatureMap featureMap = ensureFeatureMap();

	if(featureNames != null){
		checkFeatureMap(featureMap, featureNames);
	} // End if

	if(schema != null){
		RVector<?> missing = schema.getVectorElement("missing", false);

		if(missing != null){
			featureMap.addMissingValue(ValueUtil.asString(missing.asScalar()));
		}
	}

	Learner learner = ensureLearner();

	ObjFunction obj = learner.obj();

	FieldName targetField = FieldName.create("_target");
	List<String> targetCategories = null;

	if(schema != null){
		RStringVector responseName = schema.getStringElement("response_name", false);
		RStringVector responseLevels = schema.getStringElement("response_levels", false);

		if(responseName != null){
			targetField = FieldName.create(responseName.asScalar());
		} // End if

		if(responseLevels != null){
			targetCategories = responseLevels.getValues();
		}
	}

	Label label = obj.encodeLabel(targetField, targetCategories, encoder);

	encoder.setLabel(label);

	List<Feature> features = featureMap.encodeFeatures(encoder);
	for(Feature feature : features){
		encoder.addFeature(feature);
	}
}
 
Example #17
Source File: XGBoostConverter.java    From jpmml-r with GNU Affero General Public License v3.0 4 votes vote down vote up
@Override
public MiningModel encodeModel(Schema schema){
	RGenericVector booster = getObject();

	RNumberVector<?> ntreeLimit = booster.getNumericElement("ntreelimit", false);

	Learner learner = ensureLearner();

	Map<String, Object> options = new LinkedHashMap<>();
	options.put(HasXGBoostOptions.OPTION_COMPACT, this.compact);
	options.put(HasXGBoostOptions.OPTION_NTREE_LIMIT, ntreeLimit != null ? ValueUtil.asInteger(ntreeLimit.asScalar()) : null);

	Schema xgbSchema = learner.toXGBoostSchema(schema);

	MiningModel miningModel = learner.encodeMiningModel(options, xgbSchema);

	return miningModel;
}
 
Example #18
Source File: RandomForestConverter.java    From jpmml-r with GNU Affero General Public License v3.0 4 votes vote down vote up
private MiningModel encodeClassification(RGenericVector forest, Schema schema){
	RNumberVector<?> bestvar = forest.getNumericElement("bestvar");
	RNumberVector<?> treemap = forest.getNumericElement("treemap");
	RIntegerVector nodepred = forest.getIntegerElement("nodepred");
	RDoubleVector xbestsplit = forest.getDoubleElement("xbestsplit");
	RIntegerVector nrnodes = forest.getIntegerElement("nrnodes");
	RDoubleVector ntree = forest.getDoubleElement("ntree");

	int rows = nrnodes.asScalar();
	int columns = ValueUtil.asInt(ntree.asScalar());

	CategoricalLabel categoricalLabel = (CategoricalLabel)schema.getLabel();

	ScoreEncoder<Integer> scoreEncoder = new ScoreEncoder<Integer>(){

		@Override
		public Object encode(Integer value){
			return categoricalLabel.getValue(value - 1);
		}
	};

	Schema segmentSchema = schema.toAnonymousSchema();

	List<TreeModel> treeModels = new ArrayList<>();

	for(int i = 0; i < columns; i++){
		List<? extends Number> daughters = FortranMatrixUtil.getColumn(treemap.getValues(), 2 * rows, columns, i);

		TreeModel treeModel = encodeTreeModel(
				MiningFunction.CLASSIFICATION,
				scoreEncoder,
				FortranMatrixUtil.getColumn(daughters, rows, 2, 0),
				FortranMatrixUtil.getColumn(daughters, rows, 2, 1),
				FortranMatrixUtil.getColumn(nodepred.getValues(), rows, columns, i),
				FortranMatrixUtil.getColumn(bestvar.getValues(), rows, columns, i),
				FortranMatrixUtil.getColumn(xbestsplit.getValues(), rows, columns, i),
				segmentSchema
			);

		treeModels.add(treeModel);
	}

	MiningModel miningModel = new MiningModel(MiningFunction.CLASSIFICATION, ModelUtil.createMiningSchema(categoricalLabel))
		.setSegmentation(MiningModelUtil.createSegmentation(Segmentation.MultipleModelMethod.MAJORITY_VOTE, treeModels))
		.setOutput(ModelUtil.createProbabilityOutput(DataType.DOUBLE, categoricalLabel));

	return miningModel;
}
 
Example #19
Source File: RandomForestConverter.java    From jpmml-r with GNU Affero General Public License v3.0 4 votes vote down vote up
private MiningModel encodeRegression(RGenericVector forest, Schema schema){
	RNumberVector<?> leftDaughter = forest.getNumericElement("leftDaughter");
	RNumberVector<?> rightDaughter = forest.getNumericElement("rightDaughter");
	RDoubleVector nodepred = forest.getDoubleElement("nodepred");
	RNumberVector<?> bestvar = forest.getNumericElement("bestvar");
	RDoubleVector xbestsplit = forest.getDoubleElement("xbestsplit");
	RIntegerVector nrnodes = forest.getIntegerElement("nrnodes");
	RNumberVector<?> ntree = forest.getNumericElement("ntree");

	ScoreEncoder<Double> scoreEncoder = new ScoreEncoder<Double>(){

		@Override
		public Double encode(Double value){
			return value;
		}
	};

	int rows = nrnodes.asScalar();
	int columns = ValueUtil.asInt(ntree.asScalar());

	Schema segmentSchema = schema.toAnonymousSchema();

	List<TreeModel> treeModels = new ArrayList<>();

	for(int i = 0; i < columns; i++){
		TreeModel treeModel = encodeTreeModel(
				MiningFunction.REGRESSION,
				scoreEncoder,
				FortranMatrixUtil.getColumn(leftDaughter.getValues(), rows, columns, i),
				FortranMatrixUtil.getColumn(rightDaughter.getValues(), rows, columns, i),
				FortranMatrixUtil.getColumn(nodepred.getValues(), rows, columns, i),
				FortranMatrixUtil.getColumn(bestvar.getValues(), rows, columns, i),
				FortranMatrixUtil.getColumn(xbestsplit.getValues(), rows, columns, i),
				segmentSchema
			);

		treeModels.add(treeModel);
	}

	MiningModel miningModel = new MiningModel(MiningFunction.REGRESSION, ModelUtil.createMiningSchema(schema.getLabel()))
		.setSegmentation(MiningModelUtil.createSegmentation(Segmentation.MultipleModelMethod.AVERAGE, treeModels));

	return miningModel;
}
 
Example #20
Source File: RPartConverter.java    From jpmml-r with GNU Affero General Public License v3.0 4 votes vote down vote up
private List<Predicate> encodePredicates(Feature feature, int splitOffset, RNumberVector<?> splits, RIntegerVector csplit){
	Predicate leftPredicate;
	Predicate rightPredicate;

	RIntegerVector splitsDim = splits.dim();

	int splitRows = splitsDim.getValue(0);
	int splitColumns = splitsDim.getValue(1);

	List<? extends Number> ncat = FortranMatrixUtil.getColumn(splits.getValues(), splitRows, splitColumns, 1);
	List<? extends Number> index = FortranMatrixUtil.getColumn(splits.getValues(), splitRows, splitColumns, 3);

	int splitType = ValueUtil.asInt(ncat.get(splitOffset));

	Number splitValue = index.get(splitOffset);

	if(Math.abs(splitType) == 1){
		SimplePredicate.Operator leftOperator;
		SimplePredicate.Operator rightOperator;

		if(splitType == -1){
			leftOperator = SimplePredicate.Operator.LESS_THAN;
			rightOperator = SimplePredicate.Operator.GREATER_OR_EQUAL;
		} else

		{
			leftOperator = SimplePredicate.Operator.GREATER_OR_EQUAL;
			rightOperator = SimplePredicate.Operator.LESS_THAN;
		}

		leftPredicate = createSimplePredicate(feature, leftOperator, splitValue);
		rightPredicate = createSimplePredicate(feature, rightOperator, splitValue);
	} else

	{
		CategoricalFeature categoricalFeature = (CategoricalFeature)feature;

		RIntegerVector csplitDim = csplit.dim();

		int csplitRows = csplitDim.getValue(0);
		int csplitColumns = csplitDim.getValue(1);

		List<Integer> csplitRow = FortranMatrixUtil.getRow(csplit.getValues(), csplitRows, csplitColumns, ValueUtil.asInt(splitValue) - 1);

		List<?> values = categoricalFeature.getValues();

		leftPredicate = createSimpleSetPredicate(categoricalFeature, selectValues(values, csplitRow, 1));
		rightPredicate = createSimpleSetPredicate(categoricalFeature, selectValues(values, csplitRow, 3));
	}

	return Arrays.asList(leftPredicate, rightPredicate);
}
 
Example #21
Source File: SVMConverter.java    From jpmml-r with GNU Affero General Public License v3.0 4 votes vote down vote up
@Override
public SupportVectorMachineModel encodeModel(Schema schema){
	RGenericVector svm = getObject();

	RDoubleVector type = svm.getDoubleElement("type");
	RDoubleVector kernel = svm.getDoubleElement("kernel");
	RDoubleVector degree = svm.getDoubleElement("degree");
	RDoubleVector gamma = svm.getDoubleElement("gamma");
	RDoubleVector coef0 = svm.getDoubleElement("coef0");
	RGenericVector yScale = svm.getGenericElement("y.scale");
	RIntegerVector nSv = svm.getIntegerElement("nSV");
	RDoubleVector sv = svm.getDoubleElement("SV");
	RDoubleVector rho = svm.getDoubleElement("rho");
	RDoubleVector coefs = svm.getDoubleElement("coefs");

	Type svmType = Type.values()[ValueUtil.asInt(type.asScalar())];
	Kernel svmKernel = Kernel.values()[ValueUtil.asInt(kernel.asScalar())];

	org.dmg.pmml.support_vector_machine.Kernel pmmlKernel = svmKernel.createKernel(degree.asScalar(), gamma.asScalar(), coef0.asScalar());

	SupportVectorMachineModel supportVectorMachineModel;

	switch(svmType){
		case C_CLASSIFICATION:
		case NU_CLASSIFICATION:
			{
				supportVectorMachineModel = encodeClassification(pmmlKernel, sv, nSv, rho, coefs, schema);
			}
			break;
		case ONE_CLASSIFICATION:
			{
				Transformation outlier = new OutlierTransformation(){

					@Override
					public Expression createExpression(FieldRef fieldRef){
						return PMMLUtil.createApply(PMMLFunctions.LESSOREQUAL, fieldRef, PMMLUtil.createConstant(0d));
					}
				};

				supportVectorMachineModel = encodeRegression(pmmlKernel, sv, rho, coefs, schema)
					.setOutput(ModelUtil.createPredictedOutput(FieldName.create("decisionFunction"), OpType.CONTINUOUS, DataType.DOUBLE, outlier));

				if(yScale != null && yScale.size() > 0){
					throw new IllegalArgumentException();
				}
			}
			break;
		case EPS_REGRESSION:
		case NU_REGRESSION:
			{
				supportVectorMachineModel = encodeRegression(pmmlKernel, sv, rho, coefs, schema);

				if(yScale != null && yScale.size() > 0){
					RDoubleVector yScaledCenter = yScale.getDoubleElement("scaled:center");
					RDoubleVector yScaledScale = yScale.getDoubleElement("scaled:scale");

					supportVectorMachineModel.setTargets(ModelUtil.createRescaleTargets(-1d * yScaledScale.asScalar(), yScaledCenter.asScalar(), (ContinuousLabel)schema.getLabel()));
				}
			}
			break;
		default:
			throw new IllegalArgumentException();
	}

	return supportVectorMachineModel;
}
 
Example #22
Source File: RobustScaler.java    From jpmml-sklearn with GNU Affero General Public License v3.0 4 votes vote down vote up
@Override
public List<Feature> encodeFeatures(List<Feature> features, SkLearnEncoder encoder){
	Boolean withCentering = getWithCentering();
	Boolean withScaling = getWithScaling();

	List<? extends Number> center = (withCentering ? getCenter() : null);
	List<? extends Number> scale = (withScaling ? getScale() : null);

	if(center == null && scale == null){
		return features;
	}

	ClassDictUtil.checkSize(features, center, scale);

	List<Feature> result = new ArrayList<>();

	for(int i = 0; i < features.size(); i++){
		Feature feature = features.get(i);

		Number centerValue = (withCentering ? center.get(i) : 0d);
		Number scaleValue = (withScaling ? scale.get(i) : 1d);

		if(ValueUtil.isZero(centerValue) && ValueUtil.isOne(scaleValue)){
			result.add(feature);

			continue;
		}

		ContinuousFeature continuousFeature = feature.toContinuousFeature();

		// "($name - center) / scale"
		Expression expression = continuousFeature.ref();

		if(!ValueUtil.isZero(centerValue)){
			expression = PMMLUtil.createApply(PMMLFunctions.SUBTRACT, expression, PMMLUtil.createConstant(centerValue));
		} // End if

		if(!ValueUtil.isOne(scaleValue)){
			expression = PMMLUtil.createApply(PMMLFunctions.DIVIDE, expression, PMMLUtil.createConstant(scaleValue));
		}

		DerivedField derivedField = encoder.createDerivedField(FeatureUtil.createName("robust_scaler", continuousFeature), expression);

		result.add(new ContinuousFeature(encoder, derivedField));
	}

	return result;
}
 
Example #23
Source File: DNNClassifier.java    From jpmml-tensorflow with GNU Affero General Public License v3.0 4 votes vote down vote up
@Override
public NeuralNetwork encodeModel(TensorFlowEncoder encoder){
	DataField dataField = encoder.createDataField(FieldName.create("_target"), OpType.CATEGORICAL, DataType.INTEGER);

	NeuralNetwork neuralNetwork = encodeNeuralNetwork(encoder);

	List<NeuralLayer> neuralLayers = neuralNetwork.getNeuralLayers();

	NeuralLayer neuralLayer = Iterables.getLast(neuralLayers);

	List<Neuron> neurons = neuralLayer.getNeurons();

	List<String> categories;

	if(neurons.size() == 1){
		neuralLayer.setActivationFunction(NeuralNetwork.ActivationFunction.LOGISTIC);

		Neuron neuron = Iterables.getOnlyElement(neurons);

		neuralLayer = new NeuralLayer()
			.setActivationFunction(NeuralNetwork.ActivationFunction.IDENTITY);

		categories = Arrays.asList("0", "1");

		// p(no event) = 1 - p(event)
		Neuron passiveNeuron = new Neuron()
			.setId(String.valueOf(neuralLayers.size() + 1) + "/" + categories.get(0))
			.setBias(ValueUtil.floatToDouble(1f))
			.addConnections(new Connection(neuron.getId(), -1f));

		// p(event)
		Neuron activeNeuron = new Neuron()
			.setId(String.valueOf(neuralLayers.size() + 1) + "/" + categories.get(1))
			.setBias(null)
			.addConnections(new Connection(neuron.getId(), 1f));

		neuralLayer.addNeurons(passiveNeuron, activeNeuron);

		neuralNetwork.addNeuralLayers(neuralLayer);

		neurons = neuralLayer.getNeurons();
	} else

	if(neurons.size() > 2){
		neuralLayer
			.setActivationFunction(NeuralNetwork.ActivationFunction.IDENTITY)
			.setNormalizationMethod(NeuralNetwork.NormalizationMethod.SOFTMAX);

		categories = new ArrayList<>();

		for(int i = 0; i < neurons.size(); i++){
			String category = String.valueOf(i);

			categories.add(category);
		}
	} else

	{
		throw new IllegalArgumentException();
	}

	dataField = encoder.toCategorical(dataField.getName(), categories);

	CategoricalLabel categoricalLabel = new CategoricalLabel(dataField);

	neuralNetwork
		.setMiningFunction(MiningFunction.CLASSIFICATION)
		.setMiningSchema(ModelUtil.createMiningSchema(categoricalLabel))
		.setNeuralOutputs(NeuralNetworkUtil.createClassificationNeuralOutputs(neurons, categoricalLabel))
		.setOutput(ModelUtil.createProbabilityOutput(DataType.FLOAT, categoricalLabel));

	return neuralNetwork;
}
 
Example #24
Source File: StandardScalerModelConverter.java    From jpmml-sparkml with GNU Affero General Public License v3.0 4 votes vote down vote up
@Override
public List<Feature> encodeFeatures(SparkMLEncoder encoder){
	StandardScalerModel transformer = getTransformer();

	Vector mean = transformer.mean();
	Vector std = transformer.std();

	boolean withMean = transformer.getWithMean();
	boolean withStd = transformer.getWithStd();

	List<Feature> features = encoder.getFeatures(transformer.getInputCol());

	if(withMean){
		SchemaUtil.checkSize(mean.size(), features);
	} // End if

	if(withStd){
		SchemaUtil.checkSize(std.size(), features);
	}

	List<Feature> result = new ArrayList<>();

	for(int i = 0, length = features.size(); i < length; i++){
		Feature feature = features.get(i);

		FieldName name = formatName(transformer, i, length);

		Expression expression = null;

		if(withMean){
			double meanValue = mean.apply(i);

			if(!ValueUtil.isZero(meanValue)){
				ContinuousFeature continuousFeature = feature.toContinuousFeature();

				expression = PMMLUtil.createApply(PMMLFunctions.SUBTRACT, continuousFeature.ref(), PMMLUtil.createConstant(meanValue));
			}
		} // End if

		if(withStd){
			double stdValue = std.apply(i);

			if(!ValueUtil.isOne(stdValue)){
				Double factor = (1d / stdValue);

				if(expression != null){
					expression = PMMLUtil.createApply(PMMLFunctions.MULTIPLY, expression, PMMLUtil.createConstant(factor));
				} else

				{
					feature = new ProductFeature(encoder, feature, factor){

						@Override
						public ContinuousFeature toContinuousFeature(){
							Supplier<Apply> applySupplier = () -> {
								Feature feature = getFeature();
								Number factor = getFactor();

								return PMMLUtil.createApply(PMMLFunctions.MULTIPLY, (feature.toContinuousFeature()).ref(), PMMLUtil.createConstant(factor));
							};

							return toContinuousFeature(name, DataType.DOUBLE, applySupplier);
						}
					};
				}
			}
		} // End if

		if(expression != null){
			DerivedField derivedField = encoder.createDerivedField(name, OpType.CONTINUOUS, DataType.DOUBLE, expression);

			result.add(new ContinuousFeature(encoder, derivedField));
		} else

		{
			result.add(feature);
		}
	}

	return result;
}
 
Example #25
Source File: ObjFunction.java    From jpmml-xgboost with GNU Affero General Public License v3.0 4 votes vote down vote up
static
protected MiningModel createMiningModel(List<RegTree> trees, List<Float> weights, float base_score, Integer ntreeLimit, Schema schema){

	if(weights != null){

		if(trees.size() != weights.size()){
			throw new IllegalArgumentException();
		}
	} // End if

	if(ntreeLimit != null){

		if(ntreeLimit > trees.size()){
			throw new IllegalArgumentException("Tree limit " + ntreeLimit + " is greater than the number of trees");
		}

		trees = trees.subList(0, ntreeLimit);

		if(weights != null){
			weights = weights.subList(0, ntreeLimit);
		}
	} // End if

	if(weights != null){
		weights = new ArrayList<>(weights);
	}

	ContinuousLabel continuousLabel = (ContinuousLabel)schema.getLabel();

	Schema segmentSchema = schema.toAnonymousSchema();

	PredicateManager predicateManager = new PredicateManager();

	List<TreeModel> treeModels = new ArrayList<>();

	boolean equalWeights = true;

	Iterator<RegTree> treeIt = trees.iterator();
	Iterator<Float> weightIt = (weights != null ? weights.iterator() : null);

	while(treeIt.hasNext()){
		RegTree tree = treeIt.next();
		Float weight = (weightIt != null ? weightIt.next() : null);

		if(tree.isEmpty()){
			weightIt.remove();

			continue;
		} // End if

		if(weight != null){
			equalWeights &= ValueUtil.isOne(weight);
		}

		TreeModel treeModel = tree.encodeTreeModel(predicateManager, segmentSchema);

		treeModels.add(treeModel);
	}

	MiningModel miningModel = new MiningModel(MiningFunction.REGRESSION, ModelUtil.createMiningSchema(continuousLabel))
		.setMathContext(MathContext.FLOAT)
		.setSegmentation(MiningModelUtil.createSegmentation(equalWeights ? Segmentation.MultipleModelMethod.SUM : Segmentation.MultipleModelMethod.WEIGHTED_SUM, treeModels, weights))
		.setTargets(ModelUtil.createRescaleTargets(null, base_score, continuousLabel));

	return miningModel;
}
 
Example #26
Source File: DummyClassifier.java    From jpmml-sklearn with GNU Affero General Public License v3.0 4 votes vote down vote up
@Override
public TreeModel encodeModel(Schema schema){
	List<?> classes = getClasses();
	List<? extends Number> classPrior = getClassPrior();
	Object constant = getConstant();
	String strategy = getStrategy();

	ClassDictUtil.checkSize(classes, classPrior);

	CategoricalLabel categoricalLabel = (CategoricalLabel)schema.getLabel();

	int index;

	double[] probabilities;

	switch(strategy){
		case "constant":
			{
				index = classes.indexOf(constant);

				probabilities = new double[classes.size()];
				probabilities[index] = 1d;
			}
			break;
		case "most_frequent":
			{
				index = classPrior.indexOf(Collections.max((List)classPrior));

				probabilities = new double[classes.size()];
				probabilities[index] = 1d;
			}
			break;
		case "prior":
			{
				index = classPrior.indexOf(Collections.max((List)classPrior));

				probabilities = Doubles.toArray(classPrior);
			}
			break;
		default:
			throw new IllegalArgumentException(strategy);
	}

	Node root = new ClassifierNode(ValueUtil.asString(classes.get(index)), True.INSTANCE);

	List<ScoreDistribution> scoreDistributions = root.getScoreDistributions();

	for(int i = 0; i < classes.size(); i++){
		ScoreDistribution scoreDistribution = new ScoreDistribution(ValueUtil.asString(classes.get(i)), probabilities[i]);

		scoreDistributions.add(scoreDistribution);
	}

	TreeModel treeModel = new TreeModel(MiningFunction.CLASSIFICATION, ModelUtil.createMiningSchema(categoricalLabel), root)
		.setOutput(ModelUtil.createProbabilityOutput(DataType.DOUBLE, categoricalLabel));

	return treeModel;
}
 
Example #27
Source File: SVMConverter.java    From jpmml-r with GNU Affero General Public License v3.0 4 votes vote down vote up
private void scaleFeatures(RExpEncoder encoder){
	RGenericVector svm = getObject();

	RDoubleVector sv = svm.getDoubleElement("SV");
	RBooleanVector scaled = svm.getBooleanElement("scaled");
	RGenericVector xScale = svm.getGenericElement("x.scale");

	RStringVector rowNames = sv.dimnames(0);
	RStringVector columnNames = sv.dimnames(1);

	List<Feature> features = encoder.getFeatures();

	if((scaled.size() != columnNames.size()) || (scaled.size() != features.size())){
		throw new IllegalArgumentException();
	}

	RDoubleVector xScaledCenter = xScale.getDoubleElement("scaled:center");
	RDoubleVector xScaledScale = xScale.getDoubleElement("scaled:scale");

	for(int i = 0; i < columnNames.size(); i++){
		String columnName = columnNames.getValue(i);

		if(!scaled.getValue(i)){
			continue;
		}

		Feature feature = features.get(i);

		Double center = xScaledCenter.getElement(columnName);
		Double scale = xScaledScale.getElement(columnName);

		if(ValueUtil.isZero(center) && ValueUtil.isOne(scale)){
			continue;
		}

		ContinuousFeature continuousFeature = feature.toContinuousFeature();

		Expression expression = continuousFeature.ref();

		if(!ValueUtil.isZero(center)){
			expression = PMMLUtil.createApply(PMMLFunctions.SUBTRACT, expression, PMMLUtil.createConstant(center));
		} // End if

		if(!ValueUtil.isOne(scale)){
			expression = PMMLUtil.createApply(PMMLFunctions.DIVIDE, expression, PMMLUtil.createConstant(scale));
		}

		DerivedField derivedField = encoder.createDerivedField(FeatureUtil.createName("scale", feature), OpType.CONTINUOUS, DataType.DOUBLE, expression);

		features.set(i, new ContinuousFeature(encoder, derivedField));
	}
}
 
Example #28
Source File: MinMaxScaler.java    From jpmml-sklearn with GNU Affero General Public License v3.0 4 votes vote down vote up
@Override
public List<Feature> encodeFeatures(List<Feature> features, SkLearnEncoder encoder){
	List<? extends Number> min = getMin();
	List<? extends Number> scale = getScale();

	ClassDictUtil.checkSize(features, min, scale);

	List<Feature> result = new ArrayList<>();

	for(int i = 0; i < features.size(); i++){
		Feature feature = features.get(i);

		Number minValue = min.get(i);
		Number scaleValue = scale.get(i);

		if(ValueUtil.isOne(scaleValue) && ValueUtil.isZero(minValue)){
			result.add(feature);

			continue;
		}

		ContinuousFeature continuousFeature = feature.toContinuousFeature();

		// "($name * scale) + min"
		Expression expression = continuousFeature.ref();

		if(!ValueUtil.isOne(scaleValue)){
			expression = PMMLUtil.createApply(PMMLFunctions.MULTIPLY, expression, PMMLUtil.createConstant(scaleValue));
		} // End if

		if(!ValueUtil.isZero(minValue)){
			expression = PMMLUtil.createApply(PMMLFunctions.ADD, expression, PMMLUtil.createConstant(minValue));
		}

		DerivedField derivedField = encoder.createDerivedField(FeatureUtil.createName("mix_max_scaler", continuousFeature), expression);

		result.add(new ContinuousFeature(encoder, derivedField));
	}

	return result;
}
 
Example #29
Source File: StandardScaler.java    From jpmml-sklearn with GNU Affero General Public License v3.0 4 votes vote down vote up
@Override
public List<Feature> encodeFeatures(List<Feature> features, SkLearnEncoder encoder){
	Boolean withMean = getWithMean();
	Boolean withStd = getWithStd();

	List<? extends Number> mean = (withMean ? getMean() : null);
	List<? extends Number> std = (withStd ? getStd() : null);

	if(mean == null && std == null){
		return features;
	}

	ClassDictUtil.checkSize(features, mean, std);

	List<Feature> result = new ArrayList<>();

	for(int i = 0; i < features.size(); i++){
		Feature feature = features.get(i);

		Number meanValue = (withMean ? mean.get(i) : 0d);
		Number stdValue = (withStd ? std.get(i) : 1d);

		if(ValueUtil.isZero(meanValue) && ValueUtil.isOne(stdValue)){
			result.add(feature);

			continue;
		}

		ContinuousFeature continuousFeature = feature.toContinuousFeature();

		// "($name - mean) / std"
		Expression expression = continuousFeature.ref();

		if(!ValueUtil.isZero(meanValue)){
			expression = PMMLUtil.createApply(PMMLFunctions.SUBTRACT, expression, PMMLUtil.createConstant(meanValue));
		} // End if

		if(!ValueUtil.isOne(stdValue)){
			expression = PMMLUtil.createApply(PMMLFunctions.DIVIDE, expression, PMMLUtil.createConstant(stdValue));
		}

		DerivedField derivedField = encoder.createDerivedField(FeatureUtil.createName("standard_scaler", continuousFeature), expression);

		result.add(new ContinuousFeature(encoder, derivedField));
	}

	return result;
}
 
Example #30
Source File: LabelBinarizer.java    From jpmml-sklearn with GNU Affero General Public License v3.0 4 votes vote down vote up
@Override
public List<Feature> encodeFeatures(List<Feature> features, SkLearnEncoder encoder){
	List<?> classes = getClasses();

	Number negLabel = getNegLabel();
	Number posLabel = getPosLabel();

	ClassDictUtil.checkSize(1, features);

	Feature feature = features.get(0);

	List<Object> categories = new ArrayList<>();
	categories.addAll(classes);

	List<Number> labelCategories = new ArrayList<>();
	labelCategories.add(negLabel);
	labelCategories.add(posLabel);

	List<Feature> result = new ArrayList<>();

	classes = prepareClasses(classes);

	for(int i = 0; i < classes.size(); i++){
		Object value = classes.get(i);

		if(ValueUtil.isZero(negLabel) && ValueUtil.isOne(posLabel)){
			result.add(new BinaryFeature(encoder, feature, value));
		} else

		{
			// "($name == value) ? pos_label : neg_label"
			Apply apply = PMMLUtil.createApply(PMMLFunctions.IF)
				.addExpressions(PMMLUtil.createApply(PMMLFunctions.EQUAL, feature.ref(), PMMLUtil.createConstant(value, feature.getDataType())))
				.addExpressions(PMMLUtil.createConstant(posLabel), PMMLUtil.createConstant(negLabel));

			FieldName name = (classes.size() > 1 ? FeatureUtil.createName("label_binarizer", feature, i) : FeatureUtil.createName("label_binarizer", feature));

			DerivedField derivedField = encoder.createDerivedField(name, apply);

			result.add(new CategoricalFeature(encoder, derivedField, labelCategories));
		}
	}

	encoder.toCategorical(feature.getName(), categories);

	return result;
}