Java Code Examples for ij.gui.Plot#setLimits()
The following examples show how to use
ij.gui.Plot#setLimits() .
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Example 1
| Source File: Compare.java From TrakEM2 with GNU General Public License v3.0 | 6 votes |
|
static public Plot makePlot(final CATAParameters cp, final String name, final VectorString3D c) {
final double[] stdDev = c.getStdDevAtEachPoint();
if (null == stdDev) return null;
final double[] index = new double[stdDev.length];
for (int i=0; i<index.length; i++) index[i] = i;
Utils.log2("name is " + name);
Utils.log2("c is " + c);
Utils.log2("cp is " + cp);
Utils.log2("stdDev is " + stdDev);
Utils.log2("c.getCalibrationCopy() is " + c.getCalibrationCopy());
Utils.log2("c.getDelta() is " + c.getDelta());
final Calibration cal = c.getCalibrationCopy();
if (null == cal) Utils.log2("WARNING null calibration!");
final Plot plot = new Plot(name, name + " -- Point index (delta: " + Utils.cutNumber(c.getDelta(), 2) + " " + (null == cal ? "pixels" : cal.getUnits()) + ")", "Std Dev", index, stdDev);
plot.setLimits(0, cp.plot_max_x, 0, cp.plot_max_y);
plot.setSize(cp.plot_width, cp.plot_height);
plot.setLineWidth(2);
return plot;
}
Example 2
| Source File: AbstractCalibrationProcess.java From thunderstorm with GNU General Public License v3.0 | 5 votes |
|
@Override
public void drawSigmaPlots() {
// config
SigmaPlotConfig cfg = new SigmaPlotConfig();
cfg.allFrames = allFrames;
cfg.allSigma1s = allSigma1s;
cfg.allSigma2s = allSigma2s;
cfg.allPolynomsS1 = allPolynomsS1;
cfg.allPolynomsS2 = allPolynomsS2;
cfg.polynomS1Final = polynomS1Final;
cfg.polynomS2Final = polynomS2Final;
cfg.allSigma1sColor = new Color(255, 200, 200);
cfg.allSigma2sColor = new Color(200, 200, 255);
cfg.allPolynomsS1Color = new Color(255, 230, 230);
cfg.allPolynomsS2Color = new Color(230, 230, 255);
cfg.polynomS1FinalColor = new Color(255, 0, 0);
cfg.polynomS2FinalColor = new Color(0, 0, 255);
cfg.legend1X = 0.1;
cfg.legend1Y = 0.8;
cfg.legend1Label = "sigma1";
cfg.legend2X = 0.1;
cfg.legend2Y = 0.9;
cfg.legend2Label = "sigma2";
// create and setup plot
Plot plot = new Plot("Sigma", "z [nm]", "sigma [px]", null, (float[]) null);
plot.setSize(1024, 768);
plot.setLimits(-2*zRange, +2*zRange, 0, stageStep);
double[] xVals = new double[(int)(2*zRange/stageStep) * 2 + 1];
for(int val = -2*(int)zRange, i = 0; val <= +2*(int)zRange; val += stageStep, i++) {
xVals[i] = val;
}
plot.draw();
// plot
drawSigmaPlots(plot, xVals, cfg);
// display
plot.show();
}
Example 3
| Source File: ResultsDriftCorrection.java From thunderstorm with GNU General Public License v3.0 | 5 votes |
|
public static void showDriftPlot(DriftResults driftCorrection) {
int minFrame = driftCorrection.getMinFrame();
int maxFrame = driftCorrection.getMaxFrame();
int gridTicks = 200;
double tickStep = (maxFrame - minFrame) / (double) gridTicks;
double[] grid = new double[gridTicks];
double[] driftX = new double[gridTicks];
double[] driftY = new double[gridTicks];
for(int i = 0; i < gridTicks; i++) {
grid[i] = i * tickStep + minFrame;
Point2D.Double offset = driftCorrection.getInterpolatedDrift(grid[i]);
driftX[i] = offset.x;
driftY[i] = offset.y;
}
Plot plot = new Plot("Drift", "frame", "drift [" + driftCorrection.getUnits() + "]", (float[]) null, null);
if(driftCorrection.getDriftDataX().length > 50) {
plot.setFrameSize(1280, 720);
}
plot.setLimits(minFrame, driftCorrection.getMaxFrame(),
Math.min(VectorMath.min(driftCorrection.getDriftDataX()), VectorMath.min(driftCorrection.getDriftDataY())),
Math.max(VectorMath.max(driftCorrection.getDriftDataX()), VectorMath.max(driftCorrection.getDriftDataY())));
plot.setColor(new Color(255, 128, 128));
plot.addPoints(driftCorrection.getDriftDataFrame(), driftCorrection.getDriftDataX(), Plot.CROSS);
plot.draw();
plot.setColor(new Color(128, 255, 128));
plot.addPoints(driftCorrection.getDriftDataFrame(), driftCorrection.getDriftDataY(), Plot.CROSS);
plot.setColor(Color.red);
plot.addPoints(grid, driftX, Plot.LINE);
plot.addLabel(0.05, 0.8, "x drift");
plot.setColor(Color.green);
plot.addPoints(grid, driftY, Plot.LINE);
plot.addLabel(0.05, 0.9, "y drift");
plot.show();
}
Example 4
| Source File: AstigmaticBiplaneCalibrationProcess.java From thunderstorm with GNU General Public License v3.0 | 4 votes |
|
@Override
public void drawSigmaPlots() {
// config plane 1
SigmaPlotConfig cfg1 = new SigmaPlotConfig();
cfg1.allFrames = allFrames1;
cfg1.allSigma1s = allSigma11s;
cfg1.allSigma2s = allSigma12s;
cfg1.allPolynomsS1 = allPolyS11;
cfg1.allPolynomsS2 = allPolyS12;
cfg1.polynomS1Final = polyS11;
cfg1.polynomS2Final = polyS12;
cfg1.allSigma1sColor = new Color(255, 200, 200);
cfg1.allSigma2sColor = new Color(200, 200, 255);
cfg1.allPolynomsS1Color = new Color(255, 230, 230);
cfg1.allPolynomsS2Color = new Color(230, 230, 255);
cfg1.polynomS1FinalColor = new Color(255, 0, 0);
cfg1.polynomS2FinalColor = new Color(0, 0, 255);
cfg1.legend1X = 0.1;
cfg1.legend1Y = 0.8;
cfg1.legend1Label = "sigma11";
cfg1.legend2X = 0.1;
cfg1.legend2Y = 0.9;
cfg1.legend2Label = "sigma12";
// config plane 2
SigmaPlotConfig cfg2 = new SigmaPlotConfig();
cfg2.allFrames = allFrames2;
cfg2.allSigma1s = allSigma21s;
cfg2.allSigma2s = allSigma22s;
cfg2.allPolynomsS1 = allPolyS21;
cfg2.allPolynomsS2 = allPolyS22;
cfg2.polynomS1Final = polyS21;
cfg2.polynomS2Final = polyS22;
cfg2.allSigma1sColor = new Color(255, 200, 255);
cfg2.allSigma2sColor = new Color(200, 255, 255);
cfg2.allPolynomsS1Color = new Color(255, 230, 255);
cfg2.allPolynomsS2Color = new Color(230, 255, 255);
cfg2.polynomS1FinalColor = new Color(255, 0, 255);
cfg2.polynomS2FinalColor = new Color(0, 255, 255);
cfg2.legend1X = 0.2;
cfg2.legend1Y = 0.8;
cfg2.legend1Label = "sigma21";
cfg2.legend2X = 0.2;
cfg2.legend2Y = 0.9;
cfg2.legend2Label = "sigma22";
// create and setup plot
Plot plot = new Plot("Sigma", "z [nm]", "sigma [px]", null, (float[]) null);
plot.setSize(1024, 768);
plot.setLimits(-2*zRange, +2*zRange, 0, stageStep);
double[] xVals = new double[(int)(2*zRange/stageStep) * 2 + 1];
for(int val = -2*(int)zRange, i = 0; val <= +2*(int)zRange; val += stageStep, i++) {
xVals[i] = val;
}
plot.draw();
// plot
drawSigmaPlots(plot, xVals, cfg1);
drawSigmaPlots(plot, xVals, cfg2);
// display
plot.show();
}
