Java Code Examples for org.jfree.chart.plot.XYPlot#setAxisOffset()

public Grafico(String frametitle, String charttitle, String xlabel, String ylabel, XYSeriesCollection dataset){
	JFreeChart chart = ChartFactory.createXYLineChart(charttitle, xlabel, ylabel, dataset, PlotOrientation.VERTICAL, true, true, false);

	XYPlot plot = (XYPlot) chart.getPlot();

	plot.setBackgroundPaint(Color.lightGray);
	plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
	plot.setDomainGridlinePaint(Color.white);
	plot.setRangeGridlinePaint(Color.white);
	XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer();
	renderer.setShapesVisible(true);
	renderer.setShapesFilled(true);

	setXyplot(plot);
	setChart(chart);

	ChartFrame frame= new ChartFrame(frametitle,chart);

	frame.pack();
	frame.setVisible(true);
}
 

public void drawChart(String filename, int width, int height) throws IOException {
  // Create plot
  NumberAxis xAxis = new NumberAxis(xAxisLabel);
  NumberAxis yAxis = new NumberAxis(yAxisLabel);
  XYSplineRenderer renderer = new XYSplineRenderer();
  XYPlot plot = new XYPlot(dataset, xAxis, yAxis, renderer);
  plot.setBackgroundPaint(Color.lightGray);
  plot.setDomainGridlinePaint(Color.white);
  plot.setRangeGridlinePaint(Color.white);
  plot.setAxisOffset(new RectangleInsets(4, 4, 4, 4));

  // Create chart
  JFreeChart chart = new JFreeChart(chartTitle, JFreeChart.DEFAULT_TITLE_FONT, plot, true);
  ChartUtilities.applyCurrentTheme(chart);
  ChartPanel chartPanel = new ChartPanel(chart, false);

  // Draw png
  BufferedImage bi = new BufferedImage(width, height, BufferedImage.TYPE_INT_BGR);
  Graphics graphics = bi.getGraphics();
  chartPanel.setBounds(0, 0, width, height);
  chartPanel.paint(graphics);
  ImageIO.write(bi, "png", new File(filename));
}
 

protected void configureChart(final JFreeChart chart) {
	chart.setBackgroundPaint(Color.white);
	final XYPlot plot = (XYPlot) chart.getPlot();
	plot.setBackgroundPaint(Color.lightGray);
	plot.setDomainGridlinePaint(Color.white);
	plot.setRangeGridlinePaint(Color.white);
	plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));

	final DateAxis dateAxis = (DateAxis) plot.getDomainAxis();
	final NumberAxis valueAxis = (NumberAxis) plot.getRangeAxis();

	dateAxis.setDateFormatOverride(new SimpleDateFormat("dd-MMM"));
	valueAxis.setAutoRangeIncludesZero(true);
	valueAxis.setUpperMargin(0.15);
	valueAxis.setLowerMargin(0.15);
}
 

private static ChartPanel getHistogramPlotPanel(XIntervalSeriesCollection dataset, String xAxisLabel, String yAxisLabel, Color color) {
        JFreeChart chart = ChartFactory.createHistogram(
                null,
                xAxisLabel,
                yAxisLabel,
                dataset,
                PlotOrientation.VERTICAL,
                false,  // Legend?
                true,   // tooltips
                false   // url
        );
        final XYPlot xyPlot = chart.getXYPlot();
        //xyPlot.setForegroundAlpha(0.85f);
        xyPlot.setNoDataMessage("No data");
        xyPlot.setAxisOffset(new RectangleInsets(5, 5, 5, 5));

        final XYBarRenderer renderer = (XYBarRenderer) xyPlot.getRenderer();
        renderer.setDrawBarOutline(false);
        renderer.setShadowVisible(false);
        renderer.setSeriesPaint(0, color);
        StandardXYBarPainter painter = new StandardXYBarPainter();
        renderer.setBarPainter(painter);

        ChartPanel chartPanel = new ChartPanel(chart);
        chartPanel.setPreferredSize(new Dimension(300, 200));
//        chartPanel.getPopupMenu().add(createCopyDataToClipboardMenuItem());
        return chartPanel;
    }
 

/**
 * Creates a chart.
 * 
 * @param dataset  a dataset.
 * 
 * @return A chart.
 */
private static JFreeChart createChart(XYDataset dataset) {

    JFreeChart chart = ChartFactory.createTimeSeriesChart(
        "Legal & General Unit Trust Prices",  // title
        "Date",             // x-axis label
        "Price Per Unit",   // y-axis label
        dataset,            // data
        true,               // create legend?
        true,               // generate tooltips?
        false               // generate URLs?
    );

    chart.setBackgroundPaint(Color.white);

    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setBackgroundPaint(Color.lightGray);
    plot.setDomainGridlinePaint(Color.white);
    plot.setRangeGridlinePaint(Color.white);
    plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
    plot.setDomainCrosshairVisible(true);
    plot.setRangeCrosshairVisible(true);
    
    XYItemRenderer r = plot.getRenderer();
    if (r instanceof XYLineAndShapeRenderer) {
        XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) r;
        renderer.setBaseShapesVisible(true);
        renderer.setBaseShapesFilled(true);
    }
    
    DateAxis axis = (DateAxis) plot.getDomainAxis();
    axis.setDateFormatOverride(new SimpleDateFormat("MMM-yyyy"));
    
    return chart;

}
 

/**
 * Creates a chart.
 * 
 * @param dataset  a dataset.
 * 
 * @return A chart.
 */
private static JFreeChart createChart(XYDataset dataset) {

    JFreeChart chart = ChartFactory.createTimeSeriesChart(
        "Legal & General Unit Trust Prices",  // title
        "Date",             // x-axis label
        "Price Per Unit",   // y-axis label
        dataset,            // data
        true,               // create legend?
        true,               // generate tooltips?
        false               // generate URLs?
    );

    chart.setBackgroundPaint(Color.white);

    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setBackgroundPaint(Color.lightGray);
    plot.setDomainGridlinePaint(Color.white);
    plot.setRangeGridlinePaint(Color.white);
    plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
    plot.setDomainCrosshairVisible(true);
    plot.setRangeCrosshairVisible(true);
    
    XYItemRenderer r = plot.getRenderer();
    if (r instanceof XYLineAndShapeRenderer) {
        XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) r;
        renderer.setBaseShapesVisible(true);
        renderer.setBaseShapesFilled(true);
    }
    
    DateAxis axis = (DateAxis) plot.getDomainAxis();
    axis.setDateFormatOverride(new SimpleDateFormat("MMM-yyyy"));
    
    return chart;

}
 

/**
 * Creates a chart.
 *
 * @param dataset  a dataset.
 *
 * @return A chart.
 */
private static JFreeChart createChart(XYDataset dataset) {

    JFreeChart chart = ChartFactory.createTimeSeriesChart(
        "Legal & General Unit Trust Prices",  // title
        "Date",             // x-axis label
        "Price Per Unit",   // y-axis label
        dataset,            // data
        true,               // create legend?
        true,               // generate tooltips?
        false               // generate URLs?
    );

    chart.setBackgroundPaint(Color.white);

    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setBackgroundPaint(Color.lightGray);
    plot.setDomainGridlinePaint(Color.white);
    plot.setRangeGridlinePaint(Color.white);
    plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
    plot.setDomainCrosshairVisible(true);
    plot.setRangeCrosshairVisible(true);

    XYItemRenderer r = plot.getRenderer();
    if (r instanceof XYLineAndShapeRenderer) {
        XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) r;
        renderer.setBaseShapesVisible(true);
        renderer.setBaseShapesFilled(true);
        renderer.setDrawSeriesLineAsPath(true);
    }

    DateAxis axis = (DateAxis) plot.getDomainAxis();
    axis.setDateFormatOverride(new SimpleDateFormat("MMM-yyyy"));

    return chart;

}
 

private ChartPanel createChartPanel(JFreeChart chart) {
    XYPlot plot = chart.getXYPlot();

    plot.setForegroundAlpha(0.85f);
    plot.setNoDataMessage(NO_DATA_MESSAGE);
    plot.setAxisOffset(new RectangleInsets(5, 5, 5, 5));

    ChartPanel chartPanel = new ChartPanel(chart);

    MaskSelectionToolSupport maskSelectionToolSupport = new MaskSelectionToolSupport(this,
                                                                                     chartPanel,
                                                                                     "histogram_plot_area",
                                                                                     "Mask generated from selected histogram plot area",
                                                                                     Color.RED,
                                                                                     PlotAreaSelectionTool.AreaType.X_RANGE) {

        @Override
        protected String createMaskExpression(PlotAreaSelectionTool.AreaType areaType, Shape shape) {
            Rectangle2D bounds = shape.getBounds2D();
            return createMaskExpression(bounds.getMinX(), bounds.getMaxX());
        }

        protected String createMaskExpression(double x1, double x2) {
            String bandName = BandArithmetic.createExternalName(getRaster().getName());
            HistogramPanelModel.HistogramConfig currentConfig = createHistogramConfig();
            return String.format("%s >= %s && %s <= %s",
                                 bandName,
                                 model.hasStx(currentConfig) ? model.getStx(currentConfig).getHistogramScaling().scaleInverse(x1) : x1,
                                 bandName,
                                 model.hasStx(currentConfig) ? model.getStx(currentConfig).getHistogramScaling().scaleInverse(x2) : x2);
        }
    };

    chartPanel.getPopupMenu().addSeparator();
    chartPanel.getPopupMenu().add(maskSelectionToolSupport.createMaskSelectionModeMenuItem());
    chartPanel.getPopupMenu().add(maskSelectionToolSupport.createDeleteMaskMenuItem());
    chartPanel.getPopupMenu().addSeparator();
    chartPanel.getPopupMenu().add(createCopyDataToClipboardMenuItem());
    return chartPanel;
}
 

/**
 * Creates a chart.
 * 
 * @param dataset  a dataset.
 * 
 * @return A chart.
 */
private static JFreeChart createChart(XYDataset dataset) {

    JFreeChart chart = ChartFactory.createTimeSeriesChart(
        "Legal & General Unit Trust Prices",  // title
        "Date",             // x-axis label
        "Price Per Unit",   // y-axis label
        dataset,            // data
        true,               // create legend?
        true,               // generate tooltips?
        false               // generate URLs?
    );

    chart.setBackgroundPaint(Color.white);

    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setBackgroundPaint(Color.lightGray);
    plot.setDomainGridlinePaint(Color.white);
    plot.setRangeGridlinePaint(Color.white);
    plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
    plot.setDomainCrosshairVisible(true);
    plot.setRangeCrosshairVisible(true);
    
    XYItemRenderer r = plot.getRenderer();
    if (r instanceof XYLineAndShapeRenderer) {
        XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) r;
        renderer.setBaseShapesVisible(true);
        renderer.setBaseShapesFilled(true);
    }
    
    DateAxis axis = (DateAxis) plot.getDomainAxis();
    axis.setDateFormatOverride(new SimpleDateFormat("MMM-yyyy"));
    
    return chart;

}
 

/**
 * Creates a chart.
 *
 * @param dataset  a dataset.
 *
 * @return A chart.
 */
private static JFreeChart createChart(XYDataset dataset) {

    JFreeChart chart = ChartFactory.createTimeSeriesChart(
        "Legal & General Unit Trust Prices",  // title
        "Date",             // x-axis label
        "Price Per Unit",   // y-axis label
        dataset,            // data
        true,               // create legend?
        true,               // generate tooltips?
        false               // generate URLs?
    );

    chart.setBackgroundPaint(Color.white);

    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setBackgroundPaint(Color.lightGray);
    plot.setDomainGridlinePaint(Color.white);
    plot.setRangeGridlinePaint(Color.white);
    plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
    plot.setDomainCrosshairVisible(true);
    plot.setRangeCrosshairVisible(true);

    XYItemRenderer r = plot.getRenderer();
    if (r instanceof XYLineAndShapeRenderer) {
        XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) r;
        renderer.setBaseShapesVisible(true);
        renderer.setBaseShapesFilled(true);
        renderer.setDrawSeriesLineAsPath(true);
    }

    DateAxis axis = (DateAxis) plot.getDomainAxis();
    axis.setDateFormatOverride(new SimpleDateFormat("MMM-yyyy"));

    return chart;

}
 

private void setupPlotDrawing(XYPlot pPlot) {
    pPlot.setBackgroundPaint(Constants.DS_BACK_LIGHT);
    pPlot.setDomainGridlinePaint(Color.DARK_GRAY);
    pPlot.setRangeGridlinePaint(Color.DARK_GRAY);
    pPlot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
    pPlot.setDomainCrosshairVisible(true);
    pPlot.setRangeCrosshairVisible(true);
    
    DateAxis axis = (DateAxis) pPlot.getDomainAxis();
    axis.setDateFormatOverride(new SimpleDateFormat("dd.MM.yyyy HH:mm:ss"));
}
 

/**
 * Creates a chart.
 * 
 * @param dataset  a dataset.
 * 
 * @return A chart.
 */
private static JFreeChart createChart(XYDataset dataset) {

    JFreeChart chart = ChartFactory.createTimeSeriesChart(
        "Legal & General Unit Trust Prices",  // title
        "Date",             // x-axis label
        "Price Per Unit",   // y-axis label
        dataset,            // data
        true,               // create legend?
        true,               // generate tooltips?
        false               // generate URLs?
    );

    chart.setBackgroundPaint(Color.white);

    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setBackgroundPaint(Color.lightGray);
    plot.setDomainGridlinePaint(Color.white);
    plot.setRangeGridlinePaint(Color.white);
    plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
    plot.setDomainCrosshairVisible(true);
    plot.setRangeCrosshairVisible(true);
    
    XYItemRenderer r = plot.getRenderer();
    if (r instanceof XYLineAndShapeRenderer) {
        XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) r;
        renderer.setBaseShapesVisible(true);
        renderer.setBaseShapesFilled(true);
    }
    
    DateAxis axis = (DateAxis) plot.getDomainAxis();
    axis.setDateFormatOverride(new SimpleDateFormat("MMM-yyyy"));
    
    return chart;

}
 

/**
 * Creates a chart.
 *
 * @param dataset  a dataset.
 *
 * @return A chart.
 */
private static JFreeChart createChart(XYDataset dataset) {

    JFreeChart chart = ChartFactory.createTimeSeriesChart(
        "Legal & General Unit Trust Prices",  // title
        "Date",             // x-axis label
        "Price Per Unit",   // y-axis label
        dataset,            // data
        true,               // create legend?
        true,               // generate tooltips?
        false               // generate URLs?
    );

    chart.setBackgroundPaint(Color.white);

    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setBackgroundPaint(Color.lightGray);
    plot.setDomainGridlinePaint(Color.white);
    plot.setRangeGridlinePaint(Color.white);
    plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
    plot.setDomainCrosshairVisible(true);
    plot.setRangeCrosshairVisible(true);

    XYItemRenderer r = plot.getRenderer();
    if (r instanceof XYLineAndShapeRenderer) {
        XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) r;
        renderer.setBaseShapesVisible(true);
        renderer.setBaseShapesFilled(true);
        renderer.setDrawSeriesLineAsPath(true);
    }

    DateAxis axis = (DateAxis) plot.getDomainAxis();
    axis.setDateFormatOverride(new SimpleDateFormat("MMM-yyyy"));

    return chart;

}
 

/**
 * Creates the demo chart.
 * 
 * @return The chart.
 */
private static JFreeChart createChart() {

    XYDataset dataset1 = createDataset("Series 1", 100.0, new Minute(), 
            200);
    
    JFreeChart chart = ChartFactory.createTimeSeriesChart(
        "Multiple Axis Demo 3", 
        "Time of Day", 
        "Primary Range Axis",
        dataset1, 
        true, 
        true, 
        false
    );

    chart.setBackgroundPaint( Color.white );
    chart.setBorderVisible( true );
    chart.setBorderPaint( Color.BLACK );
    TextTitle subtitle = new TextTitle("Four datasets and four range axes.");  
    chart.addSubtitle( subtitle );
    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setOrientation(PlotOrientation.VERTICAL);
    plot.setBackgroundPaint(Color.lightGray);
    plot.setDomainGridlinePaint(Color.white);
    plot.setRangeGridlinePaint(Color.white);
    
    plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
    plot.getRangeAxis().setFixedDimension(15.0);
    XYItemRenderer renderer = plot.getRenderer();
    renderer.setSeriesPaint(0, Color.black);
   
    // AXIS 2
    NumberAxis axis2 = new NumberAxis("Range Axis 2");
    axis2.setFixedDimension(10.0);
    axis2.setAutoRangeIncludesZero(false);
    axis2.setLabelPaint(Color.red);
    axis2.setTickLabelPaint(Color.red);
    plot.setRangeAxis(1, axis2);
    plot.setRangeAxisLocation(1, AxisLocation.BOTTOM_OR_LEFT);

    XYDataset dataset2 = createDataset("Series 2", 1000.0, new Minute(), 
            170);
    plot.setDataset(1, dataset2);
    plot.mapDatasetToRangeAxis(1, 1);
    XYItemRenderer renderer2 = new StandardXYItemRenderer();
    renderer2.setSeriesPaint(0, Color.red);
    plot.setRenderer(1, renderer2);
    
    // AXIS 3
    NumberAxis axis3 = new NumberAxis("Range Axis 3");
    axis3.setLabelPaint(Color.blue);
    axis3.setTickLabelPaint(Color.blue);
    //axis3.setPositiveArrowVisible( true );
    plot.setRangeAxis(2, axis3);

    XYDataset dataset3 = createDataset("Series 3", 10000.0, new Minute(), 
            170);
    plot.setDataset(2, dataset3);
    plot.mapDatasetToRangeAxis(2, 2);
    XYItemRenderer renderer3 = new StandardXYItemRenderer();
    renderer3.setSeriesPaint(0, Color.blue);
    plot.setRenderer(2, renderer3);

    // AXIS 4        
    NumberAxis axis4 = new NumberAxis("Range Axis 4");
    axis4.setLabelPaint(Color.green);
    axis4.setTickLabelPaint(Color.green);
    plot.setRangeAxis(3, axis4);
    
    XYDataset dataset4 = createDataset("Series 4", 25.0, new Minute(), 200);
    plot.setDataset(3, dataset4);
    plot.mapDatasetToRangeAxis(3, 3);
    
    XYItemRenderer renderer4 = new StandardXYItemRenderer();
    renderer4.setSeriesPaint(0, Color.green);        
    plot.setRenderer(3, renderer4);
            
    return chart;
}
 

/**
 * Creates the demo chart.
 *
 * @return The chart.
 */
private static JFreeChart createChart() {

    XYDataset dataset1 = createDataset("Series 1", 100.0, new Minute(),
            200);

    JFreeChart chart = ChartFactory.createTimeSeriesChart(
        "Multiple Axis Demo 3",
        "Time of Day",
        "Primary Range Axis",
        dataset1,
        true,
        true,
        false
    );

    chart.setBackgroundPaint(Color.white);
    chart.setBorderVisible(true);
    chart.setBorderPaint(Color.BLACK);
    TextTitle subtitle = new TextTitle("Four datasets and four range axes.");
    chart.addSubtitle(subtitle);
    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setOrientation(PlotOrientation.VERTICAL);
    plot.setBackgroundPaint(Color.lightGray);
    plot.setDomainGridlinePaint(Color.white);
    plot.setRangeGridlinePaint(Color.white);

    plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
    XYItemRenderer renderer = plot.getRenderer();
    renderer.setSeriesPaint(0, Color.black);

    // AXIS 2
    NumberAxis axis2 = new NumberAxis("Range Axis 2");
    axis2.setAutoRangeIncludesZero(false);
    axis2.setLabelPaint(Color.red);
    axis2.setTickLabelPaint(Color.red);
    plot.setRangeAxis(1, axis2);
    plot.setRangeAxisLocation(1, AxisLocation.BOTTOM_OR_LEFT);

    XYDataset dataset2 = createDataset("Series 2", 1000.0, new Minute(),
            170);
    plot.setDataset(1, dataset2);
    plot.mapDatasetToRangeAxis(1, 1);
    XYItemRenderer renderer2 = new StandardXYItemRenderer();
    renderer2.setSeriesPaint(0, Color.red);
    plot.setRenderer(1, renderer2);

    // AXIS 3
    NumberAxis axis3 = new NumberAxis("Range Axis 3");
    axis3.setLabelPaint(Color.blue);
    axis3.setTickLabelPaint(Color.blue);
    //axis3.setPositiveArrowVisible(true);
    plot.setRangeAxis(2, axis3);

    XYDataset dataset3 = createDataset("Series 3", 10000.0, new Minute(),
            170);
    plot.setDataset(2, dataset3);
    plot.mapDatasetToRangeAxis(2, 2);
    XYItemRenderer renderer3 = new StandardXYItemRenderer();
    renderer3.setSeriesPaint(0, Color.blue);
    plot.setRenderer(2, renderer3);

    // AXIS 4
    NumberAxis axis4 = new NumberAxis("Range Axis 4");
    axis4.setLabelPaint(Color.green);
    axis4.setTickLabelPaint(Color.green);
    plot.setRangeAxis(3, axis4);

    XYDataset dataset4 = createDataset("Series 4", 25.0, new Minute(), 200);
    plot.setDataset(3, dataset4);
    plot.mapDatasetToRangeAxis(3, 3);

    XYItemRenderer renderer4 = new StandardXYItemRenderer();
    renderer4.setSeriesPaint(0, Color.green);
    plot.setRenderer(3, renderer4);

    return chart;
}
 

public static JFreeChart createChart(PseudoSpectrumDataSet dataset, boolean showTitle,
    boolean showLegend, double rt, double precursorMZ) {
  //
  if (dataset == null)
    return null;
  //
  NumberFormat mzForm = MZmineCore.getConfiguration().getMZFormat();
  NumberFormat rtForm = MZmineCore.getConfiguration().getRTFormat();
  NumberFormat intensityFormat = MZmineCore.getConfiguration().getIntensityFormat();

  String title = "";
  if (precursorMZ == 0)
    title = "RT=" + mzForm.format(precursorMZ);
  else
    title = MessageFormat.format("MSMS for m/z={0} RT={1}", mzForm.format(precursorMZ),
        rtForm.format(rt));

  JFreeChart chart = ChartFactory.createXYLineChart(title, // title
      "m/z", // x-axis label
      "Intensity", // y-axis label
      dataset, // data set
      PlotOrientation.VERTICAL, // orientation
      true, // isotopeFlag, // create legend?
      true, // generate tooltips?
      false // generate URLs?
  );
  chart.setBackgroundPaint(Color.white);
  chart.getTitle().setVisible(false);
  // set the plot properties
  XYPlot plot = chart.getXYPlot();
  plot.setBackgroundPaint(Color.white);
  plot.setAxisOffset(RectangleInsets.ZERO_INSETS);

  // set rendering order
  plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);

  // set crosshair (selection) properties
  plot.setDomainCrosshairVisible(false);
  plot.setRangeCrosshairVisible(false);

  // set the X axis (retention time) properties
  NumberAxis xAxis = (NumberAxis) plot.getDomainAxis();
  xAxis.setNumberFormatOverride(mzForm);
  xAxis.setUpperMargin(0.08);
  xAxis.setLowerMargin(0.00);
  xAxis.setTickLabelInsets(new RectangleInsets(0, 0, 20, 20));
  xAxis.setAutoRangeIncludesZero(true);
  xAxis.setMinorTickCount(5);

  // set the Y axis (intensity) properties
  NumberAxis yAxis = (NumberAxis) plot.getRangeAxis();
  yAxis.setNumberFormatOverride(intensityFormat);
  yAxis.setUpperMargin(0.20);

  PseudoSpectraRenderer renderer = new PseudoSpectraRenderer(Color.BLACK, false);
  plot.setRenderer(0, renderer);
  plot.setRenderer(1, renderer);
  plot.setRenderer(2, renderer);
  renderer.setSeriesVisibleInLegend(1, false);
  renderer.setSeriesPaint(2, Color.ORANGE);
  //
  chart.getTitle().setVisible(showTitle);
  chart.getLegend().setVisible(showLegend);
  //
  if (precursorMZ != 0)
    addPrecursorMarker(chart, precursorMZ);
  return chart;
}
 

private void createUI() {

        final XYPlot plot = getPlot();
        plot.setAxisOffset(new RectangleInsets(5, 5, 5, 5));
        plot.setNoDataMessage(NO_DATA_MESSAGE);
        int confidenceDSIndex = 0;
        int regressionDSIndex = 1;
        int scatterpointsDSIndex = 2;
        plot.setDataset(confidenceDSIndex, acceptableDeviationDataset);
        plot.setDataset(regressionDSIndex, regressionDataset);
        plot.setDataset(scatterpointsDSIndex, scatterpointsDataset);

        plot.addAnnotation(r2Annotation);

        final DeviationRenderer identityRenderer = new DeviationRenderer(true, false);
        identityRenderer.setSeriesPaint(0, StatisticChartStyling.SAMPLE_DATA_PAINT);
        identityRenderer.setSeriesFillPaint(0, StatisticChartStyling.SAMPLE_DATA_FILL_PAINT);
        plot.setRenderer(confidenceDSIndex, identityRenderer);

        final DeviationRenderer regressionRenderer = new DeviationRenderer(true, false);
        regressionRenderer.setSeriesPaint(0, StatisticChartStyling.REGRESSION_DATA_PAINT);
        regressionRenderer.setSeriesFillPaint(0, StatisticChartStyling.REGRESSION_DATA_FILL_PAINT);
        plot.setRenderer(regressionDSIndex, regressionRenderer);

        final XYErrorRenderer scatterPointsRenderer = new XYErrorRenderer();
        scatterPointsRenderer.setDrawXError(true);
        scatterPointsRenderer.setErrorStroke(new BasicStroke(1));
        scatterPointsRenderer.setErrorPaint(StatisticChartStyling.CORRELATIVE_POINT_OUTLINE_PAINT);
        scatterPointsRenderer.setSeriesShape(0, StatisticChartStyling.CORRELATIVE_POINT_SHAPE);
        scatterPointsRenderer.setSeriesOutlinePaint(0, StatisticChartStyling.CORRELATIVE_POINT_OUTLINE_PAINT);
        scatterPointsRenderer.setSeriesFillPaint(0, StatisticChartStyling.CORRELATIVE_POINT_FILL_PAINT);
        scatterPointsRenderer.setSeriesLinesVisible(0, false);
        scatterPointsRenderer.setSeriesShapesVisible(0, true);
        scatterPointsRenderer.setSeriesOutlineStroke(0, new BasicStroke(1.0f));
        scatterPointsRenderer.setSeriesToolTipGenerator(0, (dataset, series, item) -> {
            final XYIntervalSeriesCollection collection = (XYIntervalSeriesCollection) dataset;
            final Comparable key = collection.getSeriesKey(series);
            final double xValue = collection.getXValue(series, item);
            final double endYValue = collection.getEndYValue(series, item);
            final double yValue = collection.getYValue(series, item);
            return String.format("%s: mean = %6.2f, sigma = %6.2f | %s: value = %6.2f",
                                 getRasterName(), yValue, endYValue - yValue,
                                 key, xValue);
        });
        plot.setRenderer(scatterpointsDSIndex, scatterPointsRenderer);

        final boolean autoRangeIncludesZero = false;
        final boolean xLog = scatterPlotModel.xAxisLogScaled;
        final boolean yLog = scatterPlotModel.yAxisLogScaled;
        plot.setDomainAxis(
                StatisticChartStyling.updateScalingOfAxis(xLog, plot.getDomainAxis(), autoRangeIncludesZero));
        plot.setRangeAxis(StatisticChartStyling.updateScalingOfAxis(yLog, plot.getRangeAxis(), autoRangeIncludesZero));

        createUI(createChartPanel(chart), createInputParameterPanel(), bindingContext);

        plot.getDomainAxis().addChangeListener(domainAxisChangeListener);
        scatterPlotDisplay.setMouseWheelEnabled(true);
        scatterPlotDisplay.setMouseZoomable(true);
    }
 

/**
 * Creates the demo chart.
 *
 * @return The chart.
 */
private static JFreeChart createChart() {

    XYDataset dataset1 = createDataset("Series 1", 100.0, new Minute(),
            200);

    JFreeChart chart = ChartFactory.createTimeSeriesChart(
        "Multiple Axis Demo 3",
        "Time of Day",
        "Primary Range Axis",
        dataset1,
        true,
        true,
        false
    );

    chart.setBackgroundPaint(Color.white);
    chart.setBorderVisible(true);
    chart.setBorderPaint(Color.BLACK);
    TextTitle subtitle = new TextTitle("Four datasets and four range axes.");
    chart.addSubtitle(subtitle);
    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setOrientation(PlotOrientation.VERTICAL);
    plot.setBackgroundPaint(Color.lightGray);
    plot.setDomainGridlinePaint(Color.white);
    plot.setRangeGridlinePaint(Color.white);

    plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
    XYItemRenderer renderer = plot.getRenderer();
    renderer.setSeriesPaint(0, Color.black);

    // AXIS 2
    NumberAxis axis2 = new NumberAxis("Range Axis 2");
    axis2.setAutoRangeIncludesZero(false);
    axis2.setLabelPaint(Color.red);
    axis2.setTickLabelPaint(Color.red);
    plot.setRangeAxis(1, axis2);
    plot.setRangeAxisLocation(1, AxisLocation.BOTTOM_OR_LEFT);

    XYDataset dataset2 = createDataset("Series 2", 1000.0, new Minute(),
            170);
    plot.setDataset(1, dataset2);
    plot.mapDatasetToRangeAxis(1, 1);
    XYItemRenderer renderer2 = new StandardXYItemRenderer();
    renderer2.setSeriesPaint(0, Color.red);
    plot.setRenderer(1, renderer2);

    // AXIS 3
    NumberAxis axis3 = new NumberAxis("Range Axis 3");
    axis3.setLabelPaint(Color.blue);
    axis3.setTickLabelPaint(Color.blue);
    //axis3.setPositiveArrowVisible(true);
    plot.setRangeAxis(2, axis3);

    XYDataset dataset3 = createDataset("Series 3", 10000.0, new Minute(),
            170);
    plot.setDataset(2, dataset3);
    plot.mapDatasetToRangeAxis(2, 2);
    XYItemRenderer renderer3 = new StandardXYItemRenderer();
    renderer3.setSeriesPaint(0, Color.blue);
    plot.setRenderer(2, renderer3);

    // AXIS 4
    NumberAxis axis4 = new NumberAxis("Range Axis 4");
    axis4.setLabelPaint(Color.green);
    axis4.setTickLabelPaint(Color.green);
    plot.setRangeAxis(3, axis4);

    XYDataset dataset4 = createDataset("Series 4", 25.0, new Minute(), 200);
    plot.setDataset(3, dataset4);
    plot.mapDatasetToRangeAxis(3, 3);

    XYItemRenderer renderer4 = new StandardXYItemRenderer();
    renderer4.setSeriesPaint(0, Color.green);
    plot.setRenderer(3, renderer4);

    return chart;
}
 

/**
 * Creates a chart.
 * 
 * @param dataset  a dataset.
 * 
 * @return A chart.
 */
private static JFreeChart createChart(XYDataset dataset) {

    JFreeChart chart = ChartFactory.createTimeSeriesChart(
        "Legal & General Unit Trust Prices",  // title
        "Date",             // x-axis label
        "Price Per Unit",   // y-axis label
        dataset,            // data
        true,               // create legend?
        true,               // generate tooltips?
        false               // generate URLs?
    );

    chart.setBackgroundPaint(Color.white);

    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setBackgroundPaint(Color.lightGray);
    plot.setDomainGridlinePaint(Color.white);
    plot.setRangeGridlinePaint(Color.white);
    plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
    plot.setDomainCrosshairVisible(true);
    plot.setRangeCrosshairVisible(true);
    
    XYItemRenderer r = plot.getRenderer();
    if (r instanceof XYLineAndShapeRenderer) {
        XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) r;
        renderer.setBaseShapesVisible(true);
        renderer.setBaseShapesFilled(true);
    }
    
    DateAxis axis = (DateAxis) plot.getDomainAxis();
    axis.setDateFormatOverride(new SimpleDateFormat("MMM-yyyy"));
    
    return chart;

}
 

private static JFreeChart createChart(XYZDataset dataset, double[] mins, double[] maxs, int nPoints, XYDataset xyData) {
    NumberAxis xAxis = new NumberAxis("X");
    xAxis.setRange(mins[0],maxs[0]);


    NumberAxis yAxis = new NumberAxis("Y");
    yAxis.setRange(mins[1], maxs[1]);

    XYBlockRenderer renderer = new XYBlockRenderer();
    renderer.setBlockWidth((maxs[0]-mins[0])/(nPoints-1));
    renderer.setBlockHeight((maxs[1] - mins[1]) / (nPoints - 1));
    PaintScale scale = new GrayPaintScale(0, 1.0);
    renderer.setPaintScale(scale);
    XYPlot plot = new XYPlot(dataset, xAxis, yAxis, renderer);
    plot.setBackgroundPaint(Color.lightGray);
    plot.setDomainGridlinesVisible(false);
    plot.setRangeGridlinesVisible(false);
    plot.setAxisOffset(new RectangleInsets(5, 5, 5, 5));
    JFreeChart chart = new JFreeChart("", plot);
    chart.getXYPlot().getRenderer().setSeriesVisibleInLegend(0, false);


    NumberAxis scaleAxis = new NumberAxis("Probability (class 0)");
    scaleAxis.setAxisLinePaint(Color.white);
    scaleAxis.setTickMarkPaint(Color.white);
    scaleAxis.setTickLabelFont(new Font("Dialog", Font.PLAIN, 7));
    PaintScaleLegend legend = new PaintScaleLegend(new GrayPaintScale(),
            scaleAxis);
    legend.setStripOutlineVisible(false);
    legend.setSubdivisionCount(20);
    legend.setAxisLocation(AxisLocation.BOTTOM_OR_LEFT);
    legend.setAxisOffset(5.0);
    legend.setMargin(new RectangleInsets(5, 5, 5, 5));
    legend.setFrame(new BlockBorder(Color.red));
    legend.setPadding(new RectangleInsets(10, 10, 10, 10));
    legend.setStripWidth(10);
    legend.setPosition(RectangleEdge.LEFT);
    chart.addSubtitle(legend);

    ChartUtilities.applyCurrentTheme(chart);

    plot.setDataset(1, xyData);
    XYLineAndShapeRenderer renderer2 = new XYLineAndShapeRenderer();
    renderer2.setBaseLinesVisible(false);
    plot.setRenderer(1, renderer2);

    plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);

    return chart;
}