Java Code Examples for org.hl7.fhir.r4.model.CodeSystem#setStatus()

private CodeSystem makeMMSCodeSystem() {
  CodeSystem cs = new CodeSystem();
  cs.setId("icd11-mms");
  cs.setUrl("http://id.who.int/icd11/mms");
  cs.setName("ICD11MMS");
  cs.setTitle("ICD-11 MMS Linearization");
  cs.setStatus(PublicationStatus.ACTIVE);
  cs.setExperimental(false);
  cs.setDate(new Date());
  cs.setPublisher("WHO");
  cs.setCopyright("Consult WHO For terms of use");
  cs.setCaseSensitive(true);
  cs.setHierarchyMeaning(CodeSystemHierarchyMeaning.CLASSIFIEDWITH);
  cs.setCompositional(true);
  cs.setVersionNeeded(true);
  cs.setValueSet("http://id.who.int/icd11/ValueSet/all-MMS");
  cs.setContent(CodeSystemContentMode.COMPLETE);
  CodeSystemUtilities.defineCodeSystemProperty(cs, "kind", "The kind of artifact this concept represents", PropertyType.CODE).setUri("http://id.who.int/icd11/properties#kind");
  CodeSystemUtilities.defineCodeSystemProperty(cs, "terms", "Other keywords for searching", PropertyType.STRING).setUri("http://id.who.int/icd11/properties#terms");
  CodeSystemUtilities.defineCodeSystemProperty(cs, "codingNote", "Coding advice for this concept", PropertyType.STRING).setUri("http://id.who.int/icd11/properties#codingNote");
  CodeSystemUtilities.defineCodeSystemProperty(cs, "exclusion", "References to diseases that are excluded from this concept", PropertyType.CODING).setUri("http://id.who.int/icd11/properties#exclusion");
  CodeSystemUtilities.defineCodeSystemProperty(cs, "abstract", "If concept is abstract", PropertyType.BOOLEAN);
  CodeSystemUtilities.defineCodeSystemProperty(cs, "postcoordinationScale", "", PropertyType.CODE).setUri("http://id.who.int/icd11/properties#postcoordinationScale");
  return cs;
}
 

private CodeSystem makeEntityCodeSystem() {
    CodeSystem cs = new CodeSystem();
    cs.setId("icd11-foundation");
    cs.setUrl("http://id.who.int/icd11/foundation");
    cs.setName("ICD11Entity");
    cs.setTitle("ICD-11 Entities (Foundation)");
    cs.setStatus(PublicationStatus.ACTIVE);
    cs.setExperimental(false);
    cs.setDate(new Date());
    cs.setPublisher("WHO");
    cs.setCopyright("Consult WHO For terms of use");
    cs.setCaseSensitive(true);
    cs.setHierarchyMeaning(CodeSystemHierarchyMeaning.ISA); // though we aren't going to have a heirarchy
//    cs.setCompositional(true);
//    cs.setVersionNeeded(true);
    cs.setValueSet("http://id.who.int/icd11/ValueSet/all-foundation");
    cs.setContent(CodeSystemContentMode.COMPLETE);
    CodeSystemUtilities.defineCodeSystemProperty(cs, "exclusion", "References to diseases that are excluded from this concept", PropertyType.CODING).setUri("http://id.who.int/icd11/properties#exclusion");
    CodeSystemUtilities.defineCodeSystemProperty(cs, "inclusion", "References to diseases that are included from this concept", PropertyType.CODING).setUri("http://id.who.int/icd11/properties#inclusion");
    CodeSystemUtilities.defineCodeSystemProperty(cs, "narrowerTerm", "Narrower terms for this entity", PropertyType.CODE).setUri("http://id.who.int/icd11/properties#narrowerTerm");
    CodeSystemUtilities.defineCodeSystemProperty(cs, "parent", "Parent for this concept", PropertyType.CODE);
    CodeSystemUtilities.defineCodeSystemProperty(cs, "child", "Child for this concept", PropertyType.CODE);
    return cs;
  }
 

public static void markStatus(CodeSystem cs, String wg, StandardsStatus status, String pckage, String fmm, String normativeVersion) throws FHIRException {
  if (wg != null) {
    if (!ToolingExtensions.hasExtension(cs, ToolingExtensions.EXT_WORKGROUP) || 
        (Utilities.existsInList(ToolingExtensions.readStringExtension(cs, ToolingExtensions.EXT_WORKGROUP), "fhir", "vocab") && !Utilities.existsInList(wg, "fhir", "vocab"))) {
      ToolingExtensions.setCodeExtension(cs, ToolingExtensions.EXT_WORKGROUP, wg);
    }
  }
  if (status != null) {
    StandardsStatus ss = ToolingExtensions.getStandardsStatus(cs);
    if (ss == null || ss.isLowerThan(status)) 
      ToolingExtensions.setStandardsStatus(cs, status, normativeVersion);
    if (pckage != null) {
      if (!cs.hasUserData("ballot.package"))
        cs.setUserData("ballot.package", pckage);
      else if (!pckage.equals(cs.getUserString("ballot.package")))
        if (!"infrastructure".equals(cs.getUserString("ballot.package")))
          System.out.println("Code System "+cs.getUrl()+": ownership clash "+pckage+" vs "+cs.getUserString("ballot.package"));
    }
    if (status == StandardsStatus.NORMATIVE) {
      cs.setExperimental(false);
      cs.setStatus(PublicationStatus.ACTIVE);
    }
  }
  if (fmm != null) {
    String sfmm = ToolingExtensions.readStringExtension(cs, ToolingExtensions.EXT_FMM_LEVEL);
    if (Utilities.noString(sfmm) || Integer.parseInt(sfmm) < Integer.parseInt(fmm)) 
      ToolingExtensions.setIntegerExtension(cs, ToolingExtensions.EXT_FMM_LEVEL, Integer.parseInt(fmm));
  }
}
 

public void setMetadata(Document src, CodeSystem cs, String id, String url, String partName, String partTitle) {
  cs.setId(id);
  cs.setUrl(url);
  cs.setName("ISOCountryCodes"+partName);
  cs.setTitle("ISO Country Codes (ISO-3166)"+partTitle);
  cs.setVersion(XMLUtil.getFirstChild(src.getDocumentElement()).getAttribute("version"));
  cs.setStatus(PublicationStatus.ACTIVE);
  cs.setExperimental(false);
  cs.addContact().setName("FHIR Project Team").addTelecom().setSystem(ContactPointSystem.URL).setValue("http://hl7.org/fhir");
  cs.setDateElement(new DateTimeType(src.getDocumentElement().getAttribute("generated")));
  cs.setCopyright("Copyright ISO. See https://www.iso.org/obp/ui/#search/code/");
  cs.setCaseSensitive(true);
  cs.setContent(CodeSystemContentMode.COMPLETE);
  cs.setLanguage("en");
}