Java Code Examples for ij.gui.GenericDialog#addCheckboxGroup()

/** Shows a dialog to pick which classes is one interested in. */
static public final void extractAndShowGraph(final LayerSet ls) {
	GenericDialog gd = new GenericDialog("Graph elements");
	Class<Displayable>[] c = new Class[]{AreaList.class, AreaTree.class, Ball.class, Connector.class, Patch.class, Pipe.class, Polyline.class, Profile.class, DLabel.class, Treeline.class};
	String[] types = new String[]{"AreaList", "AreaTree", "Ball", "Connector", "Image", "Pipe", "Polyline", "Profile", "Text", "Treeline"};
	boolean[] states = new boolean[]{true, true, false, false, false, false, true, true, false, true};
	assert(c.length == types.length && types.length == states.length);
	for (int i=0; i<c.length; i++) {
		if (ZDisplayable.class.isAssignableFrom(c[i])) {
			if (!ls.contains(c[i])) states[i] = false;
		} else if (!ls.containsDisplayable(c[i])) states[i] = false;
	}
	gd.addCheckboxGroup(types.length, 1, types, states, new String[]{"Include only:"});
	gd.showDialog();
	if (gd.wasCanceled()) return;
	HashSet<Class<Displayable>> only = new HashSet<Class<Displayable>>();
	for (int i=0; i<types.length; i++) {
		if (gd.getNextBoolean()) only.add(c[i]);
	}
	Graph.extractAndShowGraph(ls, only);
}
 

private boolean showDialog() {

		gd = new GenericDialog("Render Paths as Topographic Skeletons");
		final String[] pwScopes = { "Render all paths", "Render only selected paths" };
		gd.addRadioButtonGroup("Path selection:", pwScopes, 2, 1, pwScopes[useOnlySelectedPaths ? 1 : 0]);
		final String[] roiScopes = { "None", "Render only segments contained by ROI" };
		gd.addRadioButtonGroup("ROI filtering:", roiScopes, 2, 1, roiScopes[restrictByRoi ? 1 : 0]);

		// Assemble SWC choices
		final ArrayList<String> swcTypeNames = Path.getSWCtypeNames();
		final int nTypes = swcTypeNames.size();
		final String[] typeNames = swcTypeNames.toArray(new String[nTypes]);
		final boolean[] typeChoices = new boolean[nTypes];
		for (int i = 0; i < nTypes; i++)
			typeChoices[i] = typeNames[i].contains("dendrite");
		final String[] swcScopes = { "None", "Include only the following SWC types:" };
		gd.addRadioButtonGroup("SWC filtering:", swcScopes, 2, 1, swcScopes[restrictBySWCType ? 1 : 0]);
		gd.setInsets(0, 40, 0);
		gd.addCheckboxGroup(nTypes / 2, 2, typeNames, typeChoices);

		final String[] analysisScopes = { "None", "Obtain summary", "Run \"Analyze Skeleton\" plugin" };
		gd.addRadioButtonGroup("Analysis of rendered paths:", analysisScopes, 3, 1, analysisScopes[0]);
		gd.addDialogListener(this);
		dialogItemChanged(gd, null);
		gd.showDialog();
		if (gd.wasCanceled())
			return false;
		else if (gd.wasOKed()) {
			return dialogItemChanged(gd, null);
		}
		return false;

	}
 

protected void promptForOptions() {

		final int startupOptions = 7;
		final int pluginOptions = 2;

		final String[] startupLabels = new String[startupOptions];
		final int[] startupItems = new int[startupOptions];
		final boolean[] startupStates = new boolean[startupOptions];
		int idx = 0;

		startupItems[idx] = ENFORCE_LUT;
		startupLabels[idx] = "Enforce non-inverted grayscale LUT";
		startupStates[idx++] = snt.forceGrayscale;

		startupItems[idx] = USE_THREE_PANE;
		startupLabels[idx] = "Use_three-pane view";
		startupStates[idx++] = !snt.getSinglePane();

		startupItems[idx] = USE_3D_VIEWER;
		startupLabels[idx] = "Use_3D Viewer";
		startupStates[idx++] = snt.use3DViewer;

		startupItems[idx] = LOOK_FOR_TUBES;
		startupLabels[idx] = "Load_Tubeness \".tubes.tif\" pre-processed file (if present)";
		startupStates[idx++] = snt.look4tubesFile;

		startupItems[idx] = LOOK_FOR_OOF;
		startupLabels[idx] = "Load_Tubular_Geodesics \".oof.ext\" pre-processed file (if present)";
		startupStates[idx++] = snt.look4oofFile;

		startupItems[idx] = LOOK_FOR_TRACES;
		startupLabels[idx] = "Load_default \".traces\" file (if present)";
		startupStates[idx++] = snt.look4tracesFile;

		startupItems[idx] = STORE_WIN_LOCATIONS;
		startupLabels[idx] = "Remember window locations across restarts";
		startupStates[idx++] = isSaveWinLocations();

		final String[] pluginLabels = new String[pluginOptions];
		final int[] pluginItems = new int[pluginOptions];
		final boolean[] pluginStates = new boolean[pluginOptions];
		idx = 0;

		pluginItems[idx] = COMPRESSED_XML;
		pluginLabels[idx] = "Use compression when saving traces";
		pluginStates[idx++] = snt.useCompressedXML;

		pluginItems[idx] = DEBUG;
		pluginLabels[idx] = "Enable_debug mode";
		pluginStates[idx++] = SimpleNeuriteTracer.verbose;

		final GenericDialog gd = new GenericDialog("SNT v" + SNT.VERSION + " Preferences");
		final Font font = new Font("SansSerif", Font.BOLD, 12);
		gd.setInsets(0, 0, 0);
		gd.addMessage("Startup Options:", font);
		gd.setInsets(0, 0, 0);
		gd.addCheckboxGroup(startupOptions, 1, startupLabels, startupStates);
		gd.setInsets(20, 0, 0);
		gd.addMessage("Advanced Options:", font);
		gd.setInsets(0, 0, 0);
		gd.addCheckboxGroup(pluginOptions, 1, pluginLabels, pluginStates);

		gd.enableYesNoCancel("OK", "Revert to Defaults");
		gd.showDialog();
		if (gd.wasCanceled()) {
			return;
		} else if (gd.wasOKed()) {

			for (int i = 0; i < startupOptions; i++) {
				if (gd.getNextBoolean())
					currentBooleans |= startupItems[i];
				else
					currentBooleans &= ~startupItems[i];
			}
			for (int i = 0; i < pluginOptions; i++) {
				if (gd.getNextBoolean())
					currentBooleans |= pluginItems[i];
				else
					currentBooleans &= ~pluginItems[i];
			}
			Prefs.set(BOOLEANS, currentBooleans);

		} else {
			resetOptions();
		}

		Prefs.savePreferences();
		loadPluginPrefs();

	}