Java Code Examples for com.martiansoftware.jsap.JSAPResult#getString()

@SuppressWarnings("unchecked")
public static void main( final String[] arg ) throws NoSuchMethodException, IOException, JSAPException, ClassNotFoundException {

	final SimpleJSAP jsap = new SimpleJSAP( ShiftAddXorSignedStringMap.class.getName(), "Builds a shift-add-xor signed string map by reading a newline-separated list of strings and a function built on the same list of strings.",
			new Parameter[] {
		new FlaggedOption( "bufferSize", JSAP.INTSIZE_PARSER, "64Ki", JSAP.NOT_REQUIRED, 'b',  "buffer-size", "The size of the I/O buffer used to read strings." ),
		new FlaggedOption( "encoding", ForNameStringParser.getParser( Charset.class ), "UTF-8", JSAP.NOT_REQUIRED, 'e', "encoding", "The string file encoding." ),
		new Switch( "zipped", 'z', "zipped", "The string list is compressed in gzip format." ),
		new FlaggedOption( "width", JSAP.INTEGER_PARSER, Integer.toString( Integer.SIZE ), JSAP.NOT_REQUIRED, 'w', "width", "The signature width in bits." ),
		new UnflaggedOption( "function", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.REQUIRED, JSAP.NOT_GREEDY, "The filename of the function to be signed." ),
		new UnflaggedOption( "map", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.REQUIRED, JSAP.NOT_GREEDY, "The filename of the resulting serialised signed string map." ),
		new UnflaggedOption( "stringFile", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.NOT_REQUIRED, JSAP.NOT_GREEDY, "Read strings from this file instead of standard input." ),
	});

	JSAPResult jsapResult = jsap.parse( arg );
	if ( jsap.messagePrinted() ) return;

	final int bufferSize = jsapResult.getInt( "bufferSize" );
	final String functionName = jsapResult.getString( "function" );
	final String mapName = jsapResult.getString( "map" );
	final String stringFile = jsapResult.getString( "stringFile" );
	final Charset encoding = (Charset)jsapResult.getObject( "encoding" );
	final int width = jsapResult.getInt( "width" );
	final boolean zipped = jsapResult.getBoolean( "zipped" );

	final InputStream inputStream = stringFile != null ? new FileInputStream( stringFile ) : System.in;
	final Iterator<MutableString> iterator = new LineIterator( new FastBufferedReader( new InputStreamReader( zipped ? new GZIPInputStream( inputStream ) : inputStream, encoding ), bufferSize ) );
	final Object2LongFunction<CharSequence> function = (Object2LongFunction<CharSequence>)BinIO.loadObject( functionName );
	LOGGER.info( "Signing..." );
	BinIO.storeObject( new ShiftAddXorSignedStringMap( iterator, function, width ), mapName );
	LOGGER.info( "Completed." );
}
 

public static void main( final String[] arg ) throws IOException, JSAPException, NoSuchMethodException {
	
	final SimpleJSAP jsap = new SimpleJSAP( BloomFilter.class.getName(), "Creates a Bloom filter reading from standard input a newline-separated list of terms.",
			new Parameter[] {
				new FlaggedOption( "bufferSize", IntSizeStringParser.getParser(), "64Ki", JSAP.NOT_REQUIRED, 'b',  "buffer-size", "The size of the I/O buffer used to read terms." ),
				new FlaggedOption( "encoding", ForNameStringParser.getParser( Charset.class ), "UTF-8", JSAP.NOT_REQUIRED, 'e', "encoding", "The term file encoding." ),
				new UnflaggedOption( "bloomFilter", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.REQUIRED, JSAP.NOT_GREEDY, "The filename for the serialised front-coded list." ),
				new UnflaggedOption( "size", JSAP.INTSIZE_PARSER, JSAP.NO_DEFAULT, JSAP.REQUIRED, JSAP.NOT_GREEDY, "The size of the filter (i.e., the expected number of elements in the filter; usually, the number of terms)." ),
				new UnflaggedOption( "precision", JSAP.INTEGER_PARSER, JSAP.NO_DEFAULT, JSAP.REQUIRED, JSAP.NOT_GREEDY, "The precision of the filter." )
	});
	
	JSAPResult jsapResult = jsap.parse( arg );
	if ( jsap.messagePrinted() ) return;
	
	final int bufferSize = jsapResult.getInt( "bufferSize" );
	final String filterName = jsapResult.getString( "bloomFilter" );
	final Charset encoding = (Charset)jsapResult.getObject( "encoding" );

	BloomFilter filter = new BloomFilter( jsapResult.getInt( "size" ), jsapResult.getInt( "precision" ) );
	final ProgressLogger pl = new ProgressLogger();
	pl.itemsName = "terms";
	pl.start( "Reading terms..." );
	MutableString s = new MutableString();
	FastBufferedReader reader = new FastBufferedReader( new InputStreamReader( System.in, encoding ), bufferSize );
	while( reader.readLine( s ) != null ) { 
		filter.add( s );
		pl.lightUpdate();
	}
	pl.done();

	BinIO.storeObject( filter, filterName );
}
 

public static void main( final String[] arg ) throws IOException, JSAPException, NoSuchMethodException {
	
	final SimpleJSAP jsap = new SimpleJSAP( FrontCodedStringList.class.getName(), "Builds a front-coded string list reading from standard input a newline-separated ordered list of terms.",
			new Parameter[] {
				new FlaggedOption( "bufferSize", IntSizeStringParser.getParser(), "64Ki", JSAP.NOT_REQUIRED, 'b',  "buffer-size", "The size of the I/O buffer used to read terms." ),
				new FlaggedOption( "encoding", ForNameStringParser.getParser( Charset.class ), "UTF-8", JSAP.NOT_REQUIRED, 'e', "encoding", "The term file encoding." ),
				new FlaggedOption( "ratio", IntSizeStringParser.getParser(), "4", JSAP.NOT_REQUIRED, 'r',  "ratio", "The compression ratio." ),
				new Switch( "utf8", 'u', "utf8", "Store the strings as UTF-8 byte arrays." ),
				new Switch( "zipped", 'z', "zipped", "The term list is compressed in gzip format." ),
				new UnflaggedOption( "frontCodedList", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.REQUIRED, JSAP.NOT_GREEDY, "The filename for the serialised front-coded list." )
	});
	
	JSAPResult jsapResult = jsap.parse( arg );
	if ( jsap.messagePrinted() ) return;
	
	final int bufferSize = jsapResult.getInt( "bufferSize" );
	final int ratio = jsapResult.getInt( "ratio" );
	final boolean utf8 = jsapResult.getBoolean( "utf8" );
	final boolean zipped = jsapResult.getBoolean( "zipped" );
	final String listName = jsapResult.getString( "frontCodedList" );
	final Charset encoding = (Charset)jsapResult.getObject( "encoding" );
	
	final ProgressLogger pl = new ProgressLogger();
	pl.itemsName = "words";
	pl.start( "Reading words..." );
	final FrontCodedStringList frontCodedStringList = new FrontCodedStringList( new LineIterator( new FastBufferedReader( 
			new InputStreamReader( zipped ? new GZIPInputStream( System.in ) : System.in, encoding ), bufferSize ), pl ), ratio, utf8 );
	pl.done();

	System.err.print( "Writing to file..." );
	BinIO.storeObject( frontCodedStringList, listName );
	System.err.println( " done." );
}
 

@SuppressWarnings("unchecked")
public static void main( final String[] arg ) throws IOException, JSAPException, ClassNotFoundException, SecurityException, NoSuchMethodException {

	final SimpleJSAP jsap = new SimpleJSAP( LiterallySignedStringMap.class.getName(), "Builds a shift-add-xor signed string map by reading a newline-separated list of strings and a function built on the same list of strings.",
			new Parameter[] {
		new FlaggedOption( "encoding", ForNameStringParser.getParser( Charset.class ), "UTF-8", JSAP.NOT_REQUIRED, 'e', "encoding", "The string file encoding." ),
		new Switch( "zipped", 'z', "zipped", "The string list is compressed in gzip format." ),
		new Switch( "text", 't', "text", "The string list actually a text file, with one string per line." ),
		new UnflaggedOption( "function", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.REQUIRED, JSAP.NOT_GREEDY, "The filename of the function to be signed." ),
		new UnflaggedOption( "list", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.REQUIRED, JSAP.NOT_GREEDY, "The filename of the serialised list of strings, or of a text file containing a list of strings, if -t is specified." ),
		new UnflaggedOption( "map", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.REQUIRED, JSAP.NOT_GREEDY, "The filename of the resulting map." ),
	});

	JSAPResult jsapResult = jsap.parse( arg );
	if ( jsap.messagePrinted() ) return;

	final String functionName = jsapResult.getString( "function" );
	final String listName = jsapResult.getString( "list" );
	final String mapName = jsapResult.getString( "map" );

	
	final Charset encoding = (Charset)jsapResult.getObject( "encoding" );
	final boolean zipped = jsapResult.getBoolean( "zipped" );
	final boolean text = jsapResult.getBoolean( "text" );
	
	ObjectList<MutableString> list = text ? new FileLinesCollection( listName, encoding.toString(), zipped ).allLines() : (ObjectList)BinIO.loadObject( listName );
	
	LOGGER.info( "Signing..." );
	BinIO.storeObject( new LiterallySignedStringMap( (Object2LongFunction)BinIO.loadObject( functionName ), list ), mapName );
	LOGGER.info( "Completed." );
}
 

public static File getArgOutput(JSAPResult arguments) {
    File output = new File(arguments.getString("output"));
    if (!output.exists()) { 
        output.mkdirs();
    }
    return output;
}
 

public static String getArgLogDirectory(JSAPResult arguments) {
    return arguments.getString("output");
}
 

public static String getArgGitRepositoryIdCommit(JSAPResult arguments) {
    return arguments.getString("gitRepositoryIdCommit");
}
 

public static String getArgGitRepositoryUrl(JSAPResult arguments) {
    return arguments.getString("gitRepositoryUrl");
}
 

public static String getArgGithubOAuth(JSAPResult arguments) {
    return arguments.getString("ghOauth");
}
 

public static String getArgSmtpServer(JSAPResult arguments) {
    return arguments.getString("smtpServer");
}
 

@SuppressWarnings("unchecked")
public static void main( final String[] arg ) throws ClassNotFoundException, IOException, JSAPException, SecurityException, NoSuchMethodException {

	final SimpleJSAP jsap = new SimpleJSAP( ImmutableExternalPrefixMap.class.getName(), "Builds an external map reading from standard input a newline-separated list of terms or a serialised term list. If the dump stream name is not specified, the map will be self-contained.", 
			new Parameter[] {
				new FlaggedOption( "blockSize", JSAP.INTSIZE_PARSER, ( STD_BLOCK_SIZE / 1024 ) + "Ki", JSAP.NOT_REQUIRED, 'b', "block-size", "The size of a block in the dump stream." ),
				new Switch( "serialised", 's', "serialised", "The data source (file or standard input) provides a serialised java.util.List of terms." ),
				new Switch( "zipped", 'z', "zipped", "Standard input is compressed in gzip format." ),
				new FlaggedOption( "termFile", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.NOT_REQUIRED, 'o', "offline", "Read terms from this file instead of standard input." ),					
				new FlaggedOption( "encoding", ForNameStringParser.getParser( Charset.class ), "UTF-8", JSAP.NOT_REQUIRED, 'e', "encoding", "The term list encoding." ),
				new UnflaggedOption( "map", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.REQUIRED, JSAP.NOT_GREEDY, "The filename for the serialised map." ),
				new UnflaggedOption( "dump", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.NOT_REQUIRED, JSAP.NOT_GREEDY, "An optional dump stream (the resulting map will not be self-contained)." )
		}
	);

	JSAPResult jsapResult = jsap.parse( arg );
	if ( jsap.messagePrinted() ) return;
	
	Collection<? extends CharSequence> termList;
	
	final String termFile = jsapResult.getString( "termFile" );
	final Charset encoding = (Charset)jsapResult.getObject( "encoding" );
	final boolean zipped = jsapResult.getBoolean( "zipped" );
	final boolean serialised = jsapResult.getBoolean( "serialised" );

	if ( zipped && serialised ) throw new IllegalArgumentException( "The zipped and serialised options are incompatible" );

	if ( serialised ) termList = (List<? extends CharSequence>) ( termFile != null ? BinIO.loadObject( termFile ) : BinIO.loadObject( System.in ) );
	else {
		if ( termFile != null ) termList = new FileLinesCollection( termFile, encoding.name(), zipped );
		else {
			final ObjectArrayList<MutableString> list = new ObjectArrayList<MutableString>();
			termList = list;
			final FastBufferedReader terms = new FastBufferedReader( new InputStreamReader( 
					zipped ? new GZIPInputStream( System.in ) : System.in, encoding.name() ) );
			final MutableString term = new MutableString();
			while( terms.readLine( term ) != null ) list.add( term.copy() );
			terms.close();
		}
	}

	BinIO.storeObject( new ImmutableExternalPrefixMap( termList, jsapResult.getInt( "blockSize" ), jsapResult.getString( "dump" ) ), jsapResult.getString( "map" ) );
}
 

public static String getArgGithubUserName(JSAPResult arguments) {
    return arguments.getString("githubUserName");
}
 

public static String getArgDockerImageName(JSAPResult arguments) {
    return arguments.getString("imageName");
}
 

public static String getArgSmtpPassword(JSAPResult arguments) {
    return arguments.getString("smtpPassword");
}
 

public static String getArgSmtpUsername(JSAPResult arguments) {
    return arguments.getString("smtpUsername");
}
 

public static String getArgGithubUserEmail(JSAPResult arguments) {
    return arguments.getString("githubUserEmail");
}
 

public static void main(final String arg[]) throws IllegalArgumentException, IOException, URISyntaxException, JSAPException, NoSuchAlgorithmException {

		final SimpleJSAP jsap = new SimpleJSAP(HTMLParser.class.getName(), "Produce the digest of a page: the page is downloaded or passed as argument by specifying a file",
				new Parameter[] {
					new UnflaggedOption("url", JSAP.STRING_PARSER, JSAP.REQUIRED, "The url of the page."),
					new Switch("crossAuthorityDuplicates", 'c', "cross-authority-duplicates"),
					new FlaggedOption("charBufferSize", JSAP.INTSIZE_PARSER, Integer.toString(CHAR_BUFFER_SIZE), JSAP.NOT_REQUIRED, 'b', "buffer", "The size of the parser character buffer (0 for dynamic sizing)."),
					new FlaggedOption("file", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.NOT_REQUIRED, 'f', "file", "The page to be processed."),
					new FlaggedOption("digester", JSAP.STRING_PARSER, "MD5", JSAP.NOT_REQUIRED, 'd', "digester", "The digester to be used.")
			});

			final JSAPResult jsapResult = jsap.parse(arg);
			if (jsap.messagePrinted()) System.exit(1);

		final String url = jsapResult.getString("url");
		final String digester = jsapResult.getString("digester");
		final boolean crossAuthorityDuplicates = jsapResult.userSpecified("crossAuthorityDuplicates");
		final int charBufferSize = jsapResult.getInt("charBufferSize");

		final HTMLParser<Void> htmlParser =  new HTMLParser<>(BinaryParser.forName(digester), (TextProcessor<Void>)null, crossAuthorityDuplicates, charBufferSize);
		final SetLinkReceiver linkReceiver = new SetLinkReceiver();
		final byte[] digest;

		if (!jsapResult.userSpecified("file")) {
			final URI uri = new URI(url);
			final HttpGet request = new HttpGet(uri);
			request.setConfig(RequestConfig.custom().setRedirectsEnabled(false).build());
			digest = htmlParser.parse(uri, HttpClients.createDefault().execute(request), linkReceiver);
		}
		else {
			final String file = jsapResult.getString("file");
			final String content = IOUtils.toString(new InputStreamReader(new FileInputStream(file)));
			digest = htmlParser.parse(BURL.parse(url) , new StringHttpMessages.HttpResponse(content), linkReceiver);
		}

		System.out.println("DigestHexString: " + Hex.encodeHexString(digest));
		System.out.println("Links: " + linkReceiver.urls);

		final Set<String> urlStrings = new ObjectOpenHashSet<>();
		for (final URI link: linkReceiver.urls) urlStrings.add(link.toString());
		if (urlStrings.size() != linkReceiver.urls.size()) System.out.println("There are " + linkReceiver.urls.size() + " URIs but " + urlStrings.size() + " strings");

	}
 

public static String getArgPushUrl(JSAPResult arguments) {
    return arguments.getString("pushUrl");
}
 

public static void main(final String[] args) throws JSAPException, ClassNotFoundException, RocksDBException, IOException {
	final SimpleJSAP jsap = new SimpleJSAP(ExtractProperties.class.getName(),
			"Extract properties files from a knowledge base.",
			new Parameter[] {
					new FlaggedOption("min", JSAP.INTEGER_PARSER, "0", JSAP.NOT_REQUIRED, 'm', "min", "Consider only graphs with at least this number of internal nodes."),
					new FlaggedOption("n", JSAP.LONG_PARSER, Long.toString(Long.MAX_VALUE), JSAP.NOT_REQUIRED, 'n', "n", "Analyze just this number of graphs."),
					new UnflaggedOption("kb", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.REQUIRED, JSAP.NOT_GREEDY, "The directory of the RocksDB instance containing the knowledge base." ),
					new UnflaggedOption("kbmeta", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.REQUIRED, JSAP.NOT_GREEDY, "The file containing the knowledge base metadata." ),
	});

	final JSAPResult jsapResult = jsap.parse(args);
	if ( jsap.messagePrinted() ) return;

	final int minNodes = jsapResult.getInt("min");
	final long n = jsapResult.getLong("n");
	final String kbDir = jsapResult.getString("kb");
	if (!new File(kbDir).exists()) throw new IllegalArgumentException("No such directory: " + kbDir);
	final String kbMetadataFilename = jsapResult.getString("kbmeta");
	if (!new File(kbMetadataFilename).exists()) throw new IllegalArgumentException("No such file: " + kbMetadataFilename);
	LOGGER.info("Loading KnowledgeBase metadata");
	final KnowledgeBase kb = KnowledgeBase.getInstance(kbDir, kbMetadataFilename, true);

	final ProgressLogger pl = new ProgressLogger();

	pl.count = kb.callGraphs.size();
	pl.itemsName = "graphs";
	pl.start("Enumerating graphs");

	long i = 0;
	for(final CallGraph callGraph: kb.callGraphs.values()) {
		if (i++ >= n) break;
		pl.update();
		if (callGraph.nInternal < minNodes) continue;
		final CallGraphData callGraphData = callGraph.callGraphData();
		System.out.print(callGraph.index);
		System.out.print('\t');
		System.out.print(callGraph.product);
		System.out.print('\t');
		System.out.print(callGraph.version);
		System.out.print('\t');
		System.out.print(callGraphData.graphProperties);
		System.out.print('\t');
		System.out.print(callGraphData.transposeProperties);
		System.out.println();
	}

	LOGGER.info("Closing KnowledgeBase");
	kb.close();
}
 

public static MainProcess getMainProcess(JSAP jsap,String[] args) throws JSAPException{
	JSAPResult jsapResult = jsap.parse(args);

	String launcherMode = jsapResult.getString("launcherMode");

	if (launcherMode.equals(LauncherMode.REPAIR.name())) {

		RepairnatorConfig.getInstance().setLauncherMode(LauncherMode.REPAIR);

		return MainProcessFactory.getDefaultMainProcess(args);

	} else if (launcherMode.equals(LauncherMode.BEARS.name())) {

		RepairnatorConfig.getInstance().setLauncherMode(LauncherMode.BEARS);

		return MainProcessFactory.getDefaultMainProcess(args);

	} else if (launcherMode.equals(LauncherMode.CHECKSTYLE.name())) {

		RepairnatorConfig.getInstance().setLauncherMode(LauncherMode.CHECKSTYLE);

		return MainProcessFactory.getDefaultMainProcess(args);

	} else if (launcherMode.equals(LauncherMode.GIT_REPOSITORY.name())) {

		RepairnatorConfig.getInstance().setLauncherMode(LauncherMode.GIT_REPOSITORY);

		return MainProcessFactory.getGithubMainProcess(args);

	} else if (launcherMode.equals(LauncherMode.KUBERNETES_LISTENER.name())) {
		RepairnatorConfig.getInstance().setLauncherMode(LauncherMode.KUBERNETES_LISTENER);
		return MainProcessFactory.getPipelineListenerMainProcess(args);
	} else {
		LOGGER.warn("Unknown launcher mode. Please choose the following: REPAIR, BEARS, CHECKSTYLE, GIT_REPOSITORY, KUBERNETES_LISTENER, JENKINS_PLUGIN");
		return null;
	}
}