Java Code Examples for org.jfree.chart.ChartFactory#createXYBarChart()

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Example 1
Source File: HistogramChartFactory.java    From old-mzmine3 with GNU General Public License v2.0 6 votes vote down vote up 
public static JFreeChart createHistogram(XYSeries series, double barwidth, String yAxisLabel) {
  XYSeriesCollection xydata = new XYSeriesCollection(series);
  XYBarDataset dataset = new XYBarDataset(xydata, barwidth);
  JFreeChart chart = ChartFactory.createXYBarChart("", yAxisLabel, false, "n", dataset,
      PlotOrientation.VERTICAL, true, true, false);

  XYPlot xyplot = chart.getXYPlot();
  chart.setBackgroundPaint(new Color(230, 230, 230));
  chart.getLegend().setVisible(false);
  xyplot.setForegroundAlpha(0.7F);
  xyplot.setBackgroundPaint(Color.WHITE);
  xyplot.setDomainGridlinePaint(new Color(150, 150, 150));
  xyplot.setRangeGridlinePaint(new Color(150, 150, 150));
  xyplot.getDomainAxis().setVisible(true);
  xyplot.getRangeAxis().setVisible(yAxisLabel != null);
  XYBarRenderer xybarrenderer = (XYBarRenderer) xyplot.getRenderer();
  xybarrenderer.setShadowVisible(false);
  xybarrenderer.setBarPainter(new StandardXYBarPainter());
  xybarrenderer.setDrawBarOutline(false);
  return chart;
}
Example 2
Source File: XYBarChartTests.java    From astor with GNU General Public License v2.0 6 votes vote down vote up 
/**
 * Create a horizontal bar chart with sample data in the range -3 to +3.
 *
 * @return The chart.
 */
private static JFreeChart createChart() {

    // create a dataset...
    XYSeries series1 = new XYSeries("Series 1");
    series1.add(1.0, 1.0);
    series1.add(2.0, 2.0);
    series1.add(3.0, 3.0);
    IntervalXYDataset dataset = new XYBarDataset(new XYSeriesCollection(
            series1), 1.0);
 
    // create the chart...
    return ChartFactory.createXYBarChart(
        "XY Bar Chart",  // chart title
        "Domain", false,
        "Range",
        dataset,         // data
        PlotOrientation.VERTICAL,
        true,            // include legend
        true,            // tooltips
        true             // urls
    );

}
Example 3
Source File: Histogram.java    From SPIM_Registration with GNU General Public License v2.0 6 votes vote down vote up 
protected JFreeChart createChart( final IntervalXYDataset dataset, final String title, final String units )
{
	final JFreeChart chart = ChartFactory.createXYBarChart(
		title,
		"Distance [" + units + "]",
		false,
		"Count",
		dataset,
		PlotOrientation.VERTICAL,
		false, // legend
		false,
		false );

	final NumberAxis range = (NumberAxis) chart.getXYPlot().getDomainAxis();
	range.setRange( getMin(), getMax() );

	final XYPlot plot = chart.getXYPlot();
	final XYBarRenderer renderer = (XYBarRenderer) plot.getRenderer();

	renderer.setSeriesPaint( 0, Color.red );
	renderer.setDrawBarOutline( true );
	renderer.setSeriesOutlinePaint( 0, Color.black );
	renderer.setBarPainter( new StandardXYBarPainter() );

	return chart;
}
Example 4
Source File: XYBarRendererTest.java    From ECG-Viewer with GNU General Public License v2.0 6 votes vote down vote up 
/**
 * Check that the renderer is calculating the domain bounds correctly.
 */
@Test
public void testFindDomainBounds() {
    XYSeriesCollection dataset
            = RendererXYPackageUtils.createTestXYSeriesCollection();
    JFreeChart chart = ChartFactory.createXYBarChart("Test Chart", "X",
            false, "Y", dataset, PlotOrientation.VERTICAL, false, false,
            false);
    XYPlot plot = (XYPlot) chart.getPlot();
    NumberAxis domainAxis = (NumberAxis) plot.getDomainAxis();
    domainAxis.setAutoRangeIncludesZero(false);
    Range bounds = domainAxis.getRange();
    assertFalse(bounds.contains(0.3));
    assertTrue(bounds.contains(0.5));
    assertTrue(bounds.contains(2.5));
    assertFalse(bounds.contains(2.8));
}
Example 5
Source File: HistogramChartFactory.java    From mzmine2 with GNU General Public License v2.0 6 votes vote down vote up 
public static JFreeChart createHistogram(XYSeries series, double barwidth, String yAxisLabel) {
  XYSeriesCollection xydata = new XYSeriesCollection(series);
  XYBarDataset dataset = new XYBarDataset(xydata, barwidth);
  JFreeChart chart = ChartFactory.createXYBarChart("", yAxisLabel, false, "n", dataset,
      PlotOrientation.VERTICAL, true, true, false);

  XYPlot xyplot = chart.getXYPlot();
  chart.setBackgroundPaint(new Color(230, 230, 230));
  chart.getLegend().setVisible(false);
  xyplot.setForegroundAlpha(0.7F);
  xyplot.setBackgroundPaint(Color.WHITE);
  xyplot.setDomainGridlinePaint(new Color(150, 150, 150));
  xyplot.setRangeGridlinePaint(new Color(150, 150, 150));
  xyplot.getDomainAxis().setVisible(true);
  xyplot.getRangeAxis().setVisible(yAxisLabel != null);
  XYBarRenderer xybarrenderer = (XYBarRenderer) xyplot.getRenderer();
  xybarrenderer.setShadowVisible(false);
  xybarrenderer.setBarPainter(new StandardXYBarPainter());
  xybarrenderer.setDrawBarOutline(false);
  return chart;
}
Example 6
Source File: XYBarRendererTests.java    From astor with GNU General Public License v2.0 6 votes vote down vote up 
/**
 * Check that the renderer is calculating the domain bounds correctly.
 */
public void testFindDomainBounds() {
    XYSeriesCollection dataset 
            = RendererXYPackageTests.createTestXYSeriesCollection();
    JFreeChart chart = ChartFactory.createXYBarChart("Test Chart", "X", 
            false, "Y", dataset, PlotOrientation.VERTICAL, false, false, 
            false);
    XYPlot plot = (XYPlot) chart.getPlot();
    NumberAxis domainAxis = (NumberAxis) plot.getDomainAxis();
    domainAxis.setAutoRangeIncludesZero(false);
    Range bounds = domainAxis.getRange();
    assertFalse(bounds.contains(0.3));
    assertTrue(bounds.contains(0.5));
    assertTrue(bounds.contains(2.5));
    assertFalse(bounds.contains(2.8));
}
Example 7
Source File: XYBarRendererTest.java    From SIMVA-SoS with Apache License 2.0 6 votes vote down vote up 
/**
 * Check that the renderer is calculating the domain bounds correctly.
 */
@Test
public void testFindDomainBounds() {
    XYSeriesCollection dataset
            = RendererXYPackageUtils.createTestXYSeriesCollection();
    JFreeChart chart = ChartFactory.createXYBarChart("Test Chart", "X",
            false, "Y", dataset, PlotOrientation.VERTICAL, false, false,
            false);
    XYPlot plot = (XYPlot) chart.getPlot();
    NumberAxis domainAxis = (NumberAxis) plot.getDomainAxis();
    domainAxis.setAutoRangeIncludesZero(false);
    Range bounds = domainAxis.getRange();
    assertFalse(bounds.contains(0.3));
    assertTrue(bounds.contains(0.5));
    assertTrue(bounds.contains(2.5));
    assertFalse(bounds.contains(2.8));
}
Example 8
Source File: XYBarRendererTest.java    From ccu-historian with GNU General Public License v3.0 6 votes vote down vote up 
/**
 * Check that the renderer is calculating the domain bounds correctly.
 */
@Test
public void testFindDomainBounds() {
    XYSeriesCollection dataset
            = RendererXYPackageUtils.createTestXYSeriesCollection();
    JFreeChart chart = ChartFactory.createXYBarChart("Test Chart", "X",
            false, "Y", dataset, PlotOrientation.VERTICAL, false, false,
            false);
    XYPlot plot = (XYPlot) chart.getPlot();
    NumberAxis domainAxis = (NumberAxis) plot.getDomainAxis();
    domainAxis.setAutoRangeIncludesZero(false);
    Range bounds = domainAxis.getRange();
    assertFalse(bounds.contains(0.3));
    assertTrue(bounds.contains(0.5));
    assertTrue(bounds.contains(2.5));
    assertFalse(bounds.contains(2.8));
}
Example 9
Source File: HistogramChartFactory.java    From mzmine3 with GNU General Public License v2.0 6 votes vote down vote up 
public static JFreeChart createHistogram(XYSeries series, double barwidth, String yAxisLabel) {
  XYSeriesCollection xydata = new XYSeriesCollection(series);
  XYBarDataset dataset = new XYBarDataset(xydata, barwidth);
  JFreeChart chart = ChartFactory.createXYBarChart("", yAxisLabel, false, "n", dataset,
      PlotOrientation.VERTICAL, true, true, false);

  XYPlot xyplot = chart.getXYPlot();
  chart.setBackgroundPaint(new Color(230, 230, 230));
  chart.getLegend().setVisible(false);
  xyplot.setForegroundAlpha(0.7F);
  xyplot.setBackgroundPaint(Color.WHITE);
  xyplot.setDomainGridlinePaint(new Color(150, 150, 150));
  xyplot.setRangeGridlinePaint(new Color(150, 150, 150));
  xyplot.getDomainAxis().setVisible(true);
  xyplot.getRangeAxis().setVisible(yAxisLabel != null);
  XYBarRenderer xybarrenderer = (XYBarRenderer) xyplot.getRenderer();
  xybarrenderer.setShadowVisible(false);
  xybarrenderer.setBarPainter(new StandardXYBarPainter());
  xybarrenderer.setDrawBarOutline(false);
  return chart;
}
Example 10
Source File: XYBarRendererTest.java    From buffer_bci with GNU General Public License v3.0 6 votes vote down vote up 
/**
 * Check that the renderer is calculating the domain bounds correctly.
 */
@Test
public void testFindDomainBounds() {
    XYSeriesCollection dataset
            = RendererXYPackageUtils.createTestXYSeriesCollection();
    JFreeChart chart = ChartFactory.createXYBarChart("Test Chart", "X",
            false, "Y", dataset, PlotOrientation.VERTICAL, false, false,
            false);
    XYPlot plot = (XYPlot) chart.getPlot();
    NumberAxis domainAxis = (NumberAxis) plot.getDomainAxis();
    domainAxis.setAutoRangeIncludesZero(false);
    Range bounds = domainAxis.getRange();
    assertFalse(bounds.contains(0.3));
    assertTrue(bounds.contains(0.5));
    assertTrue(bounds.contains(2.5));
    assertFalse(bounds.contains(2.8));
}
Example 11
Source File: IsotopePeakScannerSetupDialog.java    From mzmine2 with GNU General Public License v2.0 5 votes vote down vote up 
private void updateChart(ExtendedIsotopePattern pattern) {
  dataset = new ExtendedIsotopePatternDataSet(pattern, minIntensity, mergeWidth);
  chart = ChartFactory.createXYBarChart("Isotope pattern preview", "m/z", false, "Abundance",
      dataset);
  formatChart();
  pnlChart.setChart(chart);
}
Example 12
Source File: IsotopePatternPreviewDialog.java    From mzmine2 with GNU General Public License v2.0 5 votes vote down vote up 
/**
 * this is being called by the calculation task to update the pattern
 * @param pattern
 */
protected void updateChart(ExtendedIsotopePattern pattern) {
  dataset = new ExtendedIsotopePatternDataSet(pattern, minIntensity, mergeWidth);
  if (pol == PolarityType.NEUTRAL)
    chart = ChartFactory.createXYBarChart("Isotope pattern preview", "Exact mass / Da", false,
        "Abundance", dataset);
  else
    chart = ChartFactory.createXYBarChart("Isotope pattern preview", "m/z", false, "Abundance",
        dataset);

  formatChart();

  pnlChart.setChart(chart);
}
Example 13
Source File: IsotopePeakScannerSetupDialog.java    From mzmine3 with GNU General Public License v2.0 5 votes vote down vote up 
private void updateChart(ExtendedIsotopePattern pattern) {
  dataset = new ExtendedIsotopePatternDataSet(pattern, minIntensity, mergeWidth);
  chart = ChartFactory.createXYBarChart("Isotope pattern preview", "m/z", false, "Abundance",
      dataset);
  formatChart();
  pnlChart.setChart(chart);
}
Example 14
Source File: GenericChartTheme.java    From jasperreports with GNU Lesser General Public License v3.0 4 votes vote down vote up 
/**
	 *
	 */
	protected JFreeChart createXYBarChart() throws JRException
	{
		IntervalXYDataset tmpDataset = (IntervalXYDataset)getDataset();

		boolean isDate = true;
		if ( getChart().getDataset().getDatasetType() == JRChartDataset.XY_DATASET ){
			isDate = false;
		}

		ChartFactory.setChartTheme(StandardChartTheme.createLegacyTheme());
		JFreeChart jfreeChart =
			ChartFactory.createXYBarChart(
				evaluateTextExpression(getChart().getTitleExpression()),
				evaluateTextExpression(((JRBarPlot)getPlot()).getCategoryAxisLabelExpression()),
				isDate,
				evaluateTextExpression(((JRBarPlot)getPlot()).getValueAxisLabelExpression()),
				tmpDataset,
				getPlot().getOrientationValue().getOrientation(),
				isShowLegend(),
				true,
				false
				);

		configureChart(jfreeChart, getPlot());

		XYPlot xyPlot = (XYPlot)jfreeChart.getPlot();
		//plot.setNoDataMessage("No data to display");
//		((XYPlot)plot.getDomainAxis()).setTickMarksVisible(
//			((JRBarPlot)getPlot()).isShowTickMarks()
//			);
//		((CategoryAxis)plot.getDomainAxis()).setTickLabelsVisible(
//				((JRBarPlot)getPlot()).isShowTickLabels()
//				);
//		((NumberAxis)plot.getRangeAxis()).setTickMarksVisible(
//				((JRBarPlot)getPlot()).isShowTickMarks()
//				);
//		((NumberAxis)plot.getRangeAxis()).setTickLabelsVisible(
//				((JRBarPlot)getPlot()).isShowTickLabels()
//				);


		XYBarRenderer itemRenderer = (XYBarRenderer)xyPlot.getRenderer();
		itemRenderer.setBaseItemLabelGenerator((XYItemLabelGenerator)getLabelGenerator());
		itemRenderer.setShadowVisible(false);

		JRBarPlot barPlot = (JRBarPlot)getPlot();
		boolean isShowLabels = barPlot.getShowLabels() == null ? false : barPlot.getShowLabels();
		
		itemRenderer.setBaseItemLabelsVisible( isShowLabels );

		// Handle the axis formating for the category axis
		configureAxis(xyPlot.getDomainAxis(), barPlot.getCategoryAxisLabelFont(),
				barPlot.getCategoryAxisLabelColor(), barPlot.getCategoryAxisTickLabelFont(),
				barPlot.getCategoryAxisTickLabelColor(), barPlot.getCategoryAxisTickLabelMask(), barPlot.getCategoryAxisVerticalTickLabels(),
				barPlot.getOwnCategoryAxisLineColor(), false,
				(Comparable<?>)evaluateExpression(barPlot.getDomainAxisMinValueExpression()),
				(Comparable<?>)evaluateExpression(barPlot.getDomainAxisMaxValueExpression()));

		// Handle the axis formating for the value axis
		configureAxis(xyPlot.getRangeAxis(), barPlot.getValueAxisLabelFont(),
				barPlot.getValueAxisLabelColor(), barPlot.getValueAxisTickLabelFont(),
				barPlot.getValueAxisTickLabelColor(), barPlot.getValueAxisTickLabelMask(), barPlot.getValueAxisVerticalTickLabels(),
				barPlot.getOwnValueAxisLineColor(), true,
				(Comparable<?>)evaluateExpression(barPlot.getRangeAxisMinValueExpression()),
				(Comparable<?>)evaluateExpression(barPlot.getRangeAxisMaxValueExpression()));

		return jfreeChart;
	}
Example 15
Source File: SimpleChartTheme.java    From jasperreports with GNU Lesser General Public License v3.0 4 votes vote down vote up 
/**
	 *
	 */
	protected JFreeChart createXYBarChart() throws JRException
	{
		IntervalXYDataset tmpDataset = (IntervalXYDataset)getDataset();

		boolean isDate = true;
		if ( getChart().getDataset().getDatasetType() == JRChartDataset.XY_DATASET ){
			isDate = false;
		}

		ChartFactory.setChartTheme(StandardChartTheme.createLegacyTheme());
		JFreeChart jfreeChart =
			ChartFactory.createXYBarChart(
				evaluateTextExpression(getChart().getTitleExpression()),
				evaluateTextExpression(((JRBarPlot)getPlot()).getCategoryAxisLabelExpression()),
				isDate,
				evaluateTextExpression(((JRBarPlot)getPlot()).getValueAxisLabelExpression()),
				tmpDataset,
				getPlot().getOrientationValue().getOrientation(),
				isShowLegend(),
				true,
				false
				);

		configureChart(jfreeChart, getPlot());

		XYPlot xyPlot = (XYPlot)jfreeChart.getPlot();
		//plot.setNoDataMessage("No data to display");
//		((XYPlot)plot.getDomainAxis()).setTickMarksVisible(
//			((JRBarPlot)getPlot()).isShowTickMarks()
//			);
//		((CategoryAxis)plot.getDomainAxis()).setTickLabelsVisible(
//				((JRBarPlot)getPlot()).isShowTickLabels()
//				);
//		((NumberAxis)plot.getRangeAxis()).setTickMarksVisible(
//				((JRBarPlot)getPlot()).isShowTickMarks()
//				);
//		((NumberAxis)plot.getRangeAxis()).setTickLabelsVisible(
//				((JRBarPlot)getPlot()).isShowTickLabels()
//				);


		XYBarRenderer itemRenderer = (XYBarRenderer)xyPlot.getRenderer();
		itemRenderer.setBaseItemLabelGenerator((XYItemLabelGenerator)getLabelGenerator());
		itemRenderer.setShadowVisible(false);

		JRBarPlot barPlot = (JRBarPlot)getPlot();
		boolean isShowLabels = barPlot.getShowLabels() == null ? false : barPlot.getShowLabels();
		
		itemRenderer.setBaseItemLabelsVisible( isShowLabels );

		// Handle the axis formating for the category axis
		configureAxis(xyPlot.getDomainAxis(), barPlot.getCategoryAxisLabelFont(),
				barPlot.getCategoryAxisLabelColor(), barPlot.getCategoryAxisTickLabelFont(),
				barPlot.getCategoryAxisTickLabelColor(), barPlot.getCategoryAxisTickLabelMask(), barPlot.getCategoryAxisVerticalTickLabels(),
				barPlot.getOwnCategoryAxisLineColor(), getDomainAxisSettings(), DateTickUnitType.DAY,
				(Comparable<?>)evaluateExpression(barPlot.getDomainAxisMinValueExpression()), 
				(Comparable<?>)evaluateExpression(barPlot.getDomainAxisMaxValueExpression())
				);


		// Handle the axis formating for the value axis
		configureAxis(xyPlot.getRangeAxis(), barPlot.getValueAxisLabelFont(),
				barPlot.getValueAxisLabelColor(), barPlot.getValueAxisTickLabelFont(),
				barPlot.getValueAxisTickLabelColor(), barPlot.getValueAxisTickLabelMask(), barPlot.getValueAxisVerticalTickLabels(),
				barPlot.getOwnValueAxisLineColor(), getRangeAxisSettings(), DateTickUnitType.DAY,
				(Comparable<?>)evaluateExpression(barPlot.getRangeAxisMinValueExpression()), 
				(Comparable<?>)evaluateExpression(barPlot.getRangeAxisMaxValueExpression())
				);

		return jfreeChart;
	}
Example 16
Source File: DefaultChartTheme.java    From jasperreports with GNU Lesser General Public License v3.0 4 votes vote down vote up 
/**
	 *
	 */
	protected JFreeChart createXYBarChart() throws JRException
	{
		IntervalXYDataset tmpDataset = (IntervalXYDataset)getDataset();

		boolean isDate = true;
		if ( getChart().getDataset().getDatasetType() == JRChartDataset.XY_DATASET )
		{
			isDate = false;
		}

		ChartFactory.setChartTheme(StandardChartTheme.createLegacyTheme());
		JFreeChart jfreeChart =
			ChartFactory.createXYBarChart(
				evaluateTextExpression(getChart().getTitleExpression()),
				evaluateTextExpression(((JRBarPlot)getPlot()).getCategoryAxisLabelExpression()),
				isDate,
				evaluateTextExpression(((JRBarPlot)getPlot()).getValueAxisLabelExpression()),
				tmpDataset,
				getPlot().getOrientationValue().getOrientation(),
				isShowLegend(),
				true,
				false
				);

		configureChart(jfreeChart);

		XYPlot xyPlot = (XYPlot)jfreeChart.getPlot();
		//plot.setNoDataMessage("No data to display");
//		((XYPlot)plot.getDomainAxis()).setTickMarksVisible(
//			((JRFillBarPlot)getPlot()).isShowTickMarks()
//			);
//		((CategoryAxis)plot.getDomainAxis()).setTickLabelsVisible(
//				((JRFillBarPlot)getPlot()).isShowTickLabels()
//				);
//		((NumberAxis)plot.getRangeAxis()).setTickMarksVisible(
//				((JRFillBarPlot)getPlot()).isShowTickMarks()
//				);
//		((NumberAxis)plot.getRangeAxis()).setTickLabelsVisible(
//				((JRFillBarPlot)getPlot()).isShowTickLabels()
//				);


		XYBarRenderer itemRenderer = (XYBarRenderer)xyPlot.getRenderer();
		itemRenderer.setBaseItemLabelGenerator((XYItemLabelGenerator)getLabelGenerator() );
		itemRenderer.setShadowVisible(false);
		

		JRBarPlot barPlot = (JRBarPlot)getPlot();
		boolean isShowLabels = barPlot.getShowLabels() == null ? false : barPlot.getShowLabels();
		
		itemRenderer.setBaseItemLabelsVisible( isShowLabels );

		// Handle the axis formating for the category axis
		configureAxis(xyPlot.getDomainAxis(), barPlot.getCategoryAxisLabelFont(),
				barPlot.getCategoryAxisLabelColor(), barPlot.getCategoryAxisTickLabelFont(),
				barPlot.getCategoryAxisTickLabelColor(), barPlot.getCategoryAxisTickLabelMask(), barPlot.getCategoryAxisVerticalTickLabels(),
				barPlot.getCategoryAxisLineColor(), false,
				(Comparable<?>)evaluateExpression(barPlot.getDomainAxisMinValueExpression()),
				(Comparable<?>)evaluateExpression(barPlot.getDomainAxisMaxValueExpression()));

		// Handle the axis formating for the value axis
		configureAxis(xyPlot.getRangeAxis(), barPlot.getValueAxisLabelFont(),
				barPlot.getValueAxisLabelColor(), barPlot.getValueAxisTickLabelFont(),
				barPlot.getValueAxisTickLabelColor(), barPlot.getValueAxisTickLabelMask(), barPlot.getValueAxisVerticalTickLabels(),
				barPlot.getValueAxisLineColor(), true,
				(Comparable<?>)evaluateExpression(barPlot.getRangeAxisMinValueExpression()),
				(Comparable<?>)evaluateExpression(barPlot.getRangeAxisMaxValueExpression()));

		return jfreeChart;
	}
Example 17
Source File: IsotopePeakScannerSetupDialog.java    From mzmine2 with GNU General Public License v2.0 4 votes vote down vote up 
@Override
protected void addDialogComponents() {
  super.addDialogComponents();

  Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();

  pnlChart = new EChartPanel(chart);
  pnlChart.setPreferredSize(
      new Dimension((int) (screenSize.getWidth() / 3), (int) (screenSize.getHeight() / 3)));
  pnlPreview.add(pnlChart, BorderLayout.CENTER);


  // get components
  cmpAutoCarbon = (OptionalModuleComponent) this
      .getComponentForParameter(IsotopePeakScannerParameters.autoCarbonOpt);
  cmpAutoCarbonCbx = (JCheckBox) cmpAutoCarbon.getComponent(0);
  cmpPreview =
      (JCheckBox) this.getComponentForParameter(IsotopePeakScannerParameters.showPreview);
  cmpPreview.setSelected(false); // i want to have the checkbox below the pattern settings
  // but it should be disabled by default. Thats why it's hardcoded here.

  // get parameters
  pElement = parameterSet.getParameter(IsotopePeakScannerParameters.element);
  pMinIntensity = parameterSet.getParameter(IsotopePeakScannerParameters.minPatternIntensity);
  pCharge = parameterSet.getParameter(IsotopePeakScannerParameters.charge);
  pMergeWidth = parameterSet.getParameter(IsotopePeakScannerParameters.mergeWidth);
  pAutoCarbon = parameterSet.getParameter(IsotopePeakScannerParameters.autoCarbonOpt);
  autoCarbonParameters = pAutoCarbon.getEmbeddedParameters();
  pMinC = autoCarbonParameters.getParameter(AutoCarbonParameters.minCarbon);
  pMaxC = autoCarbonParameters.getParameter(AutoCarbonParameters.maxCarbon);
  pMinSize = autoCarbonParameters.getParameter(AutoCarbonParameters.minPatternSize);

  // set up gui
  form = new NumberFormatter(NumberFormat.getInstance());
  form.setValueClass(Integer.class);
  form.setFormat(new DecimalFormat("0"));
  form.setAllowsInvalid(true);
  form.setMinimum(minC);
  form.setMaximum(maxC);

  btnPrevPattern = new JButton("Previous");
  btnPrevPattern.addActionListener(this);
  btnPrevPattern.setMinimumSize(btnPrevPattern.getPreferredSize());
  btnPrevPattern.setEnabled(cmpAutoCarbonCbx.isSelected());

  txtCurrentPatternIndex = new JFormattedTextField(form);
  txtCurrentPatternIndex.addActionListener(this);
  txtCurrentPatternIndex.setText(String.valueOf((minC + maxC) / 2));
  txtCurrentPatternIndex.setPreferredSize(new Dimension(50, 25));
  txtCurrentPatternIndex.setEditable(true);
  txtCurrentPatternIndex.setEnabled(cmpAutoCarbonCbx.isSelected());

  btnNextPattern = new JButton("Next");
  btnNextPattern.addActionListener(this);
  btnNextPattern.setPreferredSize(btnNextPattern.getMinimumSize());
  btnNextPattern.setEnabled(cmpAutoCarbonCbx.isSelected());

  chart = ChartFactory.createXYBarChart("Isotope pattern preview", "m/z", false, "Abundance",
      new XYSeriesCollection(new XYSeries("")));
  chart.getPlot().setBackgroundPaint(Color.WHITE);
  chart.getXYPlot().setDomainGridlinePaint(Color.GRAY);
  chart.getXYPlot().setRangeGridlinePaint(Color.GRAY);

  pnlPreviewButtons.add(btnPrevPattern);
  pnlPreviewButtons.add(txtCurrentPatternIndex);
  pnlPreviewButtons.add(btnNextPattern);

  pack();
}
Example 18
Source File: IsotopePatternPreviewDialog.java    From mzmine2 with GNU General Public License v2.0 4 votes vote down vote up 
@Override
protected void addDialogComponents() {
  super.addDialogComponents();

  pFormula = parameterSet.getParameter(IsotopePatternPreviewParameters.formula);
  pMinIntensity = parameterSet.getParameter(IsotopePatternPreviewParameters.minIntensity);
  pMergeWidth = parameterSet.getParameter(IsotopePatternPreviewParameters.mergeWidth);
  pCharge = parameterSet.getParameter(IsotopePatternPreviewParameters.charge);

  Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();

  cmpMinIntensity =
      (PercentComponent) getComponentForParameter(IsotopePatternPreviewParameters.minIntensity);
  cmpMergeWidth =
      (DoubleComponent) getComponentForParameter(IsotopePatternPreviewParameters.mergeWidth);
  cmpCharge = (IntegerComponent) getComponentForParameter(IsotopePatternPreviewParameters.charge);
  cmpFormula =
      (StringComponent) getComponentForParameter(IsotopePatternPreviewParameters.formula);

  // panels
  newMainPanel = new JPanel(new BorderLayout());
  pnText = new JScrollPane();
  pnlChart = new EChartPanel(chart);
  pnSplit = new JSplitPane(JSplitPane.HORIZONTAL_SPLIT, pnlChart, pnText);
  table = new JTable();
  pnlParameters = new JPanel(new FlowLayout());
  pnlControl = new JPanel(new BorderLayout());

  pnText.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
  pnText.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_ALWAYS);

  pnText.setMinimumSize(new Dimension(350, 300));
  pnlChart.setMinimumSize(new Dimension(350, 200));
  pnlChart.setPreferredSize( // TODO: can you do this cleaner?
      new Dimension((int) (screenSize.getWidth() / 3), (int) (screenSize.getHeight() / 3)));
  table.setMinimumSize(new Dimension(350, 300));
  table.setDefaultEditor(Object.class, null);

  // controls
  ttGen = new SpectraToolTipGenerator();
  theme = new EIsotopePatternChartTheme();
  theme.initialize();

  // reorganize
  getContentPane().remove(mainPanel);
  organizeParameterPanel();
  pnlControl.add(pnlParameters, BorderLayout.CENTER);
  pnlControl.add(pnlButtons, BorderLayout.SOUTH);
  newMainPanel.add(pnSplit, BorderLayout.CENTER);
  newMainPanel.add(pnlControl, BorderLayout.SOUTH);
  getContentPane().add(newMainPanel);
  pnlButtons.remove(super.btnCancel);

  chart = ChartFactory.createXYBarChart("Isotope pattern preview", "m/z", false, "Abundance",
      new XYSeriesCollection(new XYSeries("")));
  pnlChart.setChart(chart);
  pnText.setViewportView(table);

  updateMinimumSize();
  pack();
}
Example 19
Source File: LiquidityChartBuilder.java    From projectforge-webapp with GNU General Public License v3.0 4 votes vote down vote up 
/**
 * @param forecast
 * @param settings (next days)
 * @return
 */
public JFreeChart createBarChart(final LiquidityForecast forecast, final LiquidityForecastSettings settings)
{
  Validate.isTrue(settings.getNextDays() > 0 && settings.getNextDays() < 500);
  final LiquidityForecastCashFlow cashFlow = new LiquidityForecastCashFlow(forecast, settings.getNextDays());
  final TimeSeries accumulatedSeriesExpected = new TimeSeries(I18n.getString("plugins.liquidityplanning.forecast.expected"));
  final TimeSeries creditSeries = new TimeSeries(I18n.getString("plugins.liquidityplanning.common.credit"));
  final TimeSeries debitSeries = new TimeSeries(I18n.getString("plugins.liquidityplanning.common.debit"));
  double accumulatedExpected = settings.getStartAmount().doubleValue();

  final DayHolder dh = new DayHolder();
  final Date lower = dh.getDate();
  for (int i = 0; i < settings.getNextDays(); i++) {
    final Day day = new Day(dh.getDayOfMonth(), dh.getMonth() + 1, dh.getYear());
    if (i > 0) {
      accumulatedExpected += cashFlow.getDebitsExpected()[i - 1].doubleValue() + cashFlow.getCreditsExpected()[i - 1].doubleValue();
    }
    accumulatedSeriesExpected.add(day, accumulatedExpected);
    creditSeries.add(day, cashFlow.getCreditsExpected()[i].doubleValue());
    debitSeries.add(day, cashFlow.getDebitsExpected()[i].doubleValue());
    dh.add(Calendar.DATE, 1);
  }
  dh.add(Calendar.DATE, -1);
  final XYChartBuilder cb = new XYChartBuilder(ChartFactory.createXYBarChart(null, null, false, null, null, PlotOrientation.VERTICAL,
      false, false, false));
  int counter = 0;

  final TimeSeriesCollection xyDataSeries = new TimeSeriesCollection();
  xyDataSeries.addSeries(accumulatedSeriesExpected);
  final XYLineAndShapeRenderer lineRenderer = new XYLineAndShapeRenderer(true, true);
  lineRenderer.setSeriesPaint(0, cb.getRedMarker());
  lineRenderer.setSeriesVisibleInLegend(0, true);
  cb.setRenderer(counter, lineRenderer).setDataset(counter++, xyDataSeries)
  .setStrongStyle(lineRenderer, false, accumulatedSeriesExpected);

  final TimeSeriesCollection cashflowSet = new TimeSeriesCollection();
  cashflowSet.addSeries(debitSeries);
  cashflowSet.addSeries(creditSeries);
  final XYBarRenderer barRenderer = new XYBarRenderer(.2);
  barRenderer.setSeriesPaint(0, cb.getGreenFill());
  barRenderer.setSeriesPaint(1, cb.getRedFill());
  barRenderer.setShadowVisible(false);
  cb.setRenderer(counter, barRenderer).setDataset(counter++, cashflowSet);

  cb.setDateXAxis(true).setDateXAxisRange(lower, dh.getDate()).setYAxis(true, null);
  return cb.getChart();
}
Example 20
Source File: IsotopePatternPreviewDialog.java    From mzmine3 with GNU General Public License v2.0 4 votes vote down vote up 
public IsotopePatternPreviewDialog(boolean valueCheckRequired, ParameterSet parameters) {
  super(valueCheckRequired, parameters);

  aboveMin = new Color(30, 180, 30);
  belowMin = new Color(200, 30, 30);

  lastCalc = 0;

  newParameters = false;
  // task = new IsotopePatternPreviewTask(formula, minIntensity,
  // mergeWidth, charge, pol, this);
  // thread = new Thread(task);

  pFormula = parameterSet.getParameter(IsotopePatternPreviewParameters.formula);
  pMinIntensity = parameterSet.getParameter(IsotopePatternPreviewParameters.minIntensity);
  pMergeWidth = parameterSet.getParameter(IsotopePatternPreviewParameters.mergeWidth);
  pCharge = parameterSet.getParameter(IsotopePatternPreviewParameters.charge);

  Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();

  cmpMinIntensity = getComponentForParameter(IsotopePatternPreviewParameters.minIntensity);
  cmpMergeWidth = getComponentForParameter(IsotopePatternPreviewParameters.mergeWidth);
  cmpCharge = getComponentForParameter(IsotopePatternPreviewParameters.charge);
  cmpFormula = getComponentForParameter(IsotopePatternPreviewParameters.formula);

  // panels
  newMainPanel = new BorderPane();
  // pnText = new ScrollPane();
  pnlChart = new EChartViewer(chart);
  table = new TableView<>();
  pnSplit = new SplitPane(pnlChart, table);
  pnSplit.setOrientation(Orientation.HORIZONTAL);
  pnlParameters = new FlowPane();
  pnlControl = new BorderPane();

  // pnText.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
  // pnText.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_ALWAYS);

  // pnText.setMinimumSize(new Dimension(350, 300));
  // pnlChart.setMinimumSize(new Dimension(350, 200));
  // pnlChart.setPreferredSize( // TODO: can you do this cleaner?
  // new Dimension((int) (screenSize.getWidth() / 3), (int) (screenSize.getHeight() / 3)));
  // table.setMinimumSize(new Dimension(350, 300));
  // table.setDefaultEditor(Object.class, null);

  // controls
  ttGen = new SpectraToolTipGenerator();
  theme = new EIsotopePatternChartTheme();
  theme.initialize();

  // reorganize
  mainPane.getChildren().remove(paramsPane);
  organizeParameterPanel();
  pnlControl.setCenter(pnlParameters);
  pnlControl.setBottom(pnlButtons);
  newMainPanel.setCenter(pnSplit);
  newMainPanel.setBottom(pnlControl);
  mainPane.setCenter(newMainPanel);
  pnlButtons.getButtons().remove(super.btnCancel);

  chart = ChartFactory.createXYBarChart("Isotope pattern preview", "m/z", false, "Abundance",
      new XYSeriesCollection(new XYSeries("")));
  pnlChart.setChart(chart);
  // pnText.setViewportView(table);


  formatChart();
  parametersChanged();
}